Package: python3-tables Version: 3.5.2-3 Severity: normal File: /usr/bin/pttree Tags: upstream
Trying it on a file (in https://www.nwb.org/nwb-neurophysiology/ nwb format) results in the listed below exception. This repository/file is available via git-annex from http://datasets.datalad.org/labs/churchland/najafi-2018-nwb/.git/ (git-annex)hopa:~/proj/dandi/nwb-datasets/najafi-2018-nwb[master]data/FN_dataSharing/nwb $> pttree mouse1_fni16_150818_001_ch2-PnevPanResults-170808-180842.nwb /usr/lib/python3/dist-packages/tables/attributeset.py:312: DataTypeWarning: Unsupported type for attribute '.specloc' in node '/'. Offending HDF5 class: 7 value = self._g_getattr(self._v_node, name) /usr/lib/python3/dist-packages/tables/group.py:1208: UserWarning: problems loading leaf ``/file_create_date``:: variable length strings are not supported yet The leaf will become an ``UnImplemented`` node. % (self._g_join(childname), exc)) /usr/lib/python3/dist-packages/tables/group.py:1208: UserWarning: problems loading leaf ``/identifier``:: variable length strings are not supported yet The leaf will become an ``UnImplemented`` node. % (self._g_join(childname), exc)) /usr/lib/python3/dist-packages/tables/group.py:1208: UserWarning: problems loading leaf ``/session_description``:: variable length strings are not supported yet The leaf will become an ``UnImplemented`` node. % (self._g_join(childname), exc)) /usr/lib/python3/dist-packages/tables/group.py:1208: UserWarning: problems loading leaf ``/session_start_time``:: variable length strings are not supported yet The leaf will become an ``UnImplemented`` node. % (self._g_join(childname), exc)) /usr/lib/python3/dist-packages/tables/group.py:1208: UserWarning: problems loading leaf ``/timestamps_reference_time``:: variable length strings are not supported yet The leaf will become an ``UnImplemented`` node. % (self._g_join(childname), exc)) Traceback (most recent call last): File "/usr/bin/pttree", line 11, in <module> load_entry_point('tables==3.5.2', 'console_scripts', 'pttree')() File "/usr/lib/python3/dist-packages/tables/scripts/pttree.py", line 116, in main tree_str = get_tree_str(f, nodename, **args.__dict__) File "/usr/lib/python3/dist-packages/tables/scripts/pttree.py", line 186, in get_tree_str m = node.size_in_memory AttributeError: 'UnImplemented' object has no attribute 'size_in_memory' -- System Information: Debian Release: buster/sid APT prefers unstable APT policy: (600, 'unstable'), (300, 'experimental'), (100, 'unstable-debug'), (100, 'stable') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 4.19.0-6-amd64 (SMP w/4 CPU cores) Locale: LANG=en_US.utf8, LC_CTYPE=en_US.utf8 (charmap=UTF-8), LANGUAGE=en_US.utf8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled Versions of packages python3-tables depends on: ii python-tables-data 3.5.2-3 ii python3 3.7.2-1 ii python3-numexpr 2.6.9-1 ii python3-numpy 1:1.16.2-1 ii python3-six 1.12.0-1 ii python3-tables-lib 3.5.2-3 python3-tables recommends no packages. Versions of packages python3-tables suggests: pn python-tables-doc <none> ii python3-netcdf4 1.4.2-1+b1 ii vitables 2.1-1 -- debconf-show failed
