AFAIK the only standard way to run tests is by sourcing whatever files
are in the tests/ folder of a package. This is actually what 'R CMD
check' does to run the tests.
When you use the following commands
```
require("S4Vectors")
S4Vectors:::.test()
```
or
```
BiocGenerics:::testPackage("S4Vecto
On Sat, Jan 11, 2020 at 10:12:48AM +0100, Dylan Aïssi wrote:
> Le ven. 10 janv. 2020 à 00:30, Pages, Herve a écrit :
> > Based on the traceback the error happens during evaluation of the 1st
> > argument ('target') passed to checkEqualsNumeric(), that is, during
> > evaluation of 'runmed(y, 7)'. S
Hi,
Le ven. 10 janv. 2020 à 00:30, Pages, Herve a écrit :
> Based on the traceback the error happens during evaluation of the 1st
> argument ('target') passed to checkEqualsNumeric(), that is, during
> evaluation of 'runmed(y, 7)'. Since this involves base R code only
> (runmed() is implemented i
Good to know. Thanks!
Hi Herve,
I've read your other analysis - thanks for this hint.
On Thu, Jan 09, 2020 at 06:33:35PM +, Pages, Herve wrote:
> For me to be able to troubleshoot this, I would need to have access to
> your setup. How do I do that?
Just to answer this question that might come up again in future.
Taking a closer look at this it seems that the segfault occurs in the
following test (S4Vectors/inst/unitTests/test_Rle-utils.R, line 121):
line 118: y <- (-20:20)^2
line 119: y[c(1,10,21,41)] <- c(100L, 30L, 400L, 470L)
line 120: checkEqualsNumeric(smoothEnds(y), as.vector(smoothEnds(Rle
Hi,
None of our build machines is able to reproduce this sorry:
https://bioconductor.org/checkResults/3.10/bioc-LATEST/S4Vectors/
https://bioconductor.org/checkResults/3.11/bioc-LATEST/S4Vectors/
My own attempt with latest R devel was also unsuccessful:
https://github.com/Bioconductor/
Control: tags -1 upstream
Control: forwarded -1 Bioconductor Package Maintainer
Hi,
as you can read below S4Vectors segfaults in its test. Here you can
find a complete test log
https://ci.debian.net/data/autopkgtest/unstable/amd64/r/r-bioc-s4vectors/3725032/log.gz
which says in the end:
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