Bug#961013: diamond-aligner: Diamond faill with the error: Assertion `index >= 0 && index < size()' failed.

2020-06-04 Thread Andreas Tille
On Wed, Jun 03, 2020 at 10:36:39PM +0530, Pranav Ballaney wrote: > I've narrowed the issue down to one (or a few) sequences. Basically this > error occurs whenever a query sequence is less than five nucleotides (and > is independent of the length of sequences in the database file). Besides, > it's

Bug#961013: diamond-aligner: Diamond faill with the error: Assertion `index >= 0 && index < size()' failed.

2020-06-03 Thread Pranav Ballaney
Hi, I've narrowed the issue down to one (or a few) sequences. Basically this error occurs whenever a query sequence is less than five nucleotides (and is independent of the length of sequences in the database file). Besides, it's not specific to the Debian package. I encountered the same error

Bug#961013: diamond-aligner: Diamond faill with the error: Assertion `index >= 0 && index < size()' failed.

2020-05-19 Thread Andreas Tille
Control: forwarded -1 https://github.com/bbuchfink/diamond/issues/351 Hi Marcelo, thank you for the effort you have spent into this issue. I' watching the upstream issue and due to the first line in this mail also the Debian Bug Tracking system will do so. On Tue, May 19, 2020 at 08:19:44AM

Bug#961013: [Debian-med-packaging] Bug#961013: diamond-aligner: Diamond faill with the error: Assertion `index >= 0 && index < size()' failed.

2020-05-19 Thread olivier sallou
On Tue, 2020-05-19 at 08:19 -0300, Marcelo Luiz de Laia wrote: > Package: diamond-aligner > Version: 0.9.32-2 > Severity: important > > Dear Maintainer, > > I run diamond like this: > > diamond blastx --threads 2 --outfmt 5 --max-target-seqs 5 --evalue > 1e-5 --db > /home/marcelo/Diamond_DB/nr

Bug#961013: diamond-aligner: Diamond faill with the error: Assertion `index >= 0 && index < size()' failed.

2020-05-19 Thread Marcelo Luiz de Laia
Package: diamond-aligner Version: 0.9.32-2 Severity: important Dear Maintainer, I run diamond like this: diamond blastx --threads 2 --outfmt 5 --max-target-seqs 5 --evalue 1e-5 --db /home/marcelo/Diamond_DB/nr --query /home/marcelo/Google\ Drive/Mlaia/NoISeq/ExonID_GDE.fa -o