The attached patch appears to fix the build in Ubuntu.
diff -Nru minimap2-2.17+dfsg/debian/changelog minimap2-2.17+dfsg/debian/changelog
--- minimap2-2.17+dfsg/debian/changelog 2020-07-07 21:32:26.0 +1200
+++ minimap2-2.17+dfsg/debian/changelog 2020-09-15 12:34:50.0 +1200
@@ -1,3 +1
Source: minimap2
Version: 2.17+dfsg-9
Severity: serious
Control: close -1 2.17+dfsg-11
Tags: sid bullseye
User: release.debian@packages.debian.org
Usertags: out-of-sync
Dear maintainer(s),
As recently announced [1], the Release Team now considers packages that
are out-of-sync between testing
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