On 7 Oct 2020, at 14:16, Andreas Tille wrote:
>
> On Wed, Oct 07, 2020 at 09:36:06AM +, John Marshall wrote:
>> --enable-plugins --with-plugin-dir='$(libdir)/htslib'
>> --with-plugin-path='/usr/local/lib/htslib:/usr/local/libexec/htslib:$(plugindir)'
>
> OK, that's in Git now
Great,
On Wed, Oct 07, 2020 at 09:36:06AM +, John Marshall wrote:
>
> There is no need to patch configure.ac to alter this. Just add
> --with-plugin-dir='$(libdir)/htslib' as another configure option.
>
> I see Debian policy at last now blesses FHS 3.0, which includes libexec.
> However you may
On 2 Oct 2020, at 10:45, Andreas Tille
mailto:andr...@fam-tille.de>> wrote:
Please inspect
https://salsa.debian.org/med-team/htslib/-/commit/88644ba8e4096302d996dae2a0399195e2e53819
That is the right place for configure options.
(and also your hint to the pull request
Control: tags -1 pending
On Thu, Oct 01, 2020 at 02:15:48PM +, John Marshall wrote:
> Source: htslib
> Version: 1.11-1
>
> I would recommend building HTSlib with plugins enabled. Doing this will
> activate HTSlib's plugin mechanism so that the Debian-supplied libhts.so will
> be able to
If you do enable plugins, in 1.11 please also apply this patch:
https://github.com/samtools/htslib/pull/1150
Source: htslib
Version: 1.11-1
I would recommend building HTSlib with plugins enabled. Doing this will
activate HTSlib's plugin mechanism so that the Debian-supplied libhts.so will
be able to use any other file access plugins that the user may have installed,
and will move e.g. the libcurl and
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