Bug#1062344: htslib: diff for 64-bit time_t transition, for htslib 1.19

2024-02-20 Thread Étienne Mollier
; normally there should be no surprises here, but just in case. In hope this helps, -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/1, please excuse my verbosity `-on air: Crippled Black Phoenix - Bonefire diff -Nru

Bug#1046029: double build failures in libvitacilina-perl

2024-02-21 Thread Étienne Mollier
though I would have expected much more fallouts if the latter). [1]: https://www.utf8-chartable.de/ I will move on to lower hanging fruits for now, ;) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/5, please

Bug#1064147: ftbfs: test failures affecting Bio.SeqIO.SeqXmIIO

2024-02-17 Thread Étienne Mollier
/.pybuild/cpython3_3.11/build/Bio/SeqIO/SeqXmlIO.py", line 163, in startEntryFieldElement return self.startPropertyElement(attrs) File "/<>/.pybuild/cpython3_3.11/build/Bio/SeqIO/SeqXmlIO.py", line 339, i

Bug#1064134: ITP: python-nixio -- NIX data model implementation in pure Python

2024-02-17 Thread Étienne Mollier
Package: wnpp Severity: wishlist Owner: Étienne Mollier X-Debbugs-Cc: debian-de...@lists.debian.org * Package name: python-nixio Version : 1.5.3 Upstream Contact: Jan Grewe * URL : * License : BDS-3-Clauses Programming Lang: Python Description : NIX

Bug#1044079: augur 24 still ftbfs against pandas 2.1.4

2024-02-07 Thread Étienne Mollier
ools.datetimes import parsing > results = parsing.parse_time_string(d, dayfirst=dayfirst) E AttributeError: module 'pandas._libs.tslibs.parsing' has no attribute 'parse_time_string' Too bad things looked promising, -- .''`. Étienne Mollier : :' : pgp: 8f9

Bug#1063542: python-parsl-doc: please make the build reproducible

2024-02-09 Thread Étienne Mollier
earch indexer, sliced by dashes when the name contained some, preventing sed passes to resolve the issue. I see to include your patch in the next python-parsl upload; this will also allow some cleanup in the d/rules. Have a nice day, :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6

Bug#1058768: [Debian-med-packaging] Bug#1058768: cyvcf2: ftbfs and autopkgtest regression with htslib 1.19

2023-12-22 Thread Étienne Mollier
y checked the new upstream version but it still failed to build with the newer htslib 1.19 on my end. Have a nice day, :) -- .''`. Étienne Mollier : :' : gpg: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/1, please excuse my verbosity `- signature.asc De

Bug#1057983: brian: runtime dependency on cython legitimate

2023-12-14 Thread Étienne Mollier
that to a whooping 3500% depending on the target CPU) performance boost from running with cython3 available. (Speaking of GSL, this one depends on make and libgsl-dev, but they look missing from the runtime dependencies for now; g++ is part of the suggestions though.) Have a nice day, :) --

Bug#1058768: cyvcf2: ftbfs and autopkgtest regression with htslib 1.19

2023-12-15 Thread Étienne Mollier
e test suite. From tests done locally, this does not look caused by the disappearance of an internal htslib symbol that leaked to the libhts3 package symbols table from version 1.16 to 1.18. That could be a bug in cyvcf2, or one introduced in htslib 1.19, in which case the bug may have to be reassigned accordingly. This issue will become "serious" after htslib 1.19 is migrated to unstable. For information, -- .''`. Étienne Mollier : :' : gpg: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/2, please excuse my verbosity `-on air: Conception - In Your Multitude signature.asc Description: PGP signature

Bug#1058790: mayavi2: autopkgtest failure in pysurfer since python-traitsui 8

2023-12-16 Thread Étienne Mollier
. I'm considering providing a team upload to resolve this particular issue. Have a nice day, :) -- .''`. Étienne Mollier : :' : gpg: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/7, please excuse my verbosity `-on air: K2 - Storm at Sunset

Bug#1057983: brian: runtime dependency on cython legitimate

2023-12-14 Thread Étienne Mollier
a dependency. > > adding cython3 as an autopkg test dependency should also be ok if the tests > need cython3. Sounds good, thank you for your advice, I will demote cython3 to a recommendation and close the bug. Have a nice day, :) -- .''`. Étienne Mollier : :' : gpg: 8f91 b227 c7d6

Bug#1058705: nitime: please provide non-superficial autopkgtest support

2023-12-14 Thread Étienne Mollier
, :) -- .''`. Étienne Mollier : :' : gpg: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/3, please excuse my verbosity `-on air: Starcastle - Fountains signature.asc Description: PGP signature

Bug#1058768: [Debian-med-packaging] Bug#1058768: cyvcf2: ftbfs and autopkgtest regression with htslib 1.19

2023-12-16 Thread Étienne Mollier
the bug at play. We will see how it goes. [1]: https://ci.debian.net/packages/c/cyvcf2/unstable/amd64/41057999/ [2]: https://github.com/brentp/cyvcf2/pull/290 Have a nice day, :) -- .''`. Étienne Mollier : :' : gpg: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from

Bug#1058394: augur: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.12 3.11" returned exit code 13

2023-12-13 Thread Étienne Mollier
ed 'pyfastx' These test failures stem from pyfastx lacking Python 3.12 due to missing cython shared objects rebuild for that python3 version. I'm checking whether other packages are affected. Have a nice day, :) -- .''`. Étienne Mollier : :' : gpg: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8

Bug#1059428: brian: Add support for loong64

2023-12-28 Thread Étienne Mollier
forgot to remove the original Debian patch which implemented the optimizer options selection per cpu; this will be safely removed on next brian package upload. Have a nice day, :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts

Bug#1054535: neuron: There is a compilation error for Neuron on the LoongArch machine.

2023-12-20 Thread Étienne Mollier
, the patch's DEP3 metadata would really gain in being filled in. For the moment it is only filled with boilerplate text. Have a nice day, :) -- .''`. Étienne Mollier : :' : gpg: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/3, please excuse my verbosity

Bug#1059717: phylonium: packaging help likely needed

2023-12-30 Thread Étienne Mollier
the package does not risk becoming team orphaned. [1]: https://github.com/EvolBioInf/andi/pull/17 For information, -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/3, please excuse my verbosity `-on air: Van der Graaf Generator

Bug#1059714: spaced: packaging help likely needed

2023-12-30 Thread Étienne Mollier
the package does not risk becoming team orphaned. [1]: https://github.com/EvolBioInf/andi/pull/17 For information, -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/3, please excuse my verbosity `- signature.asc

Bug#1059715: libmurmurhash: packaging help likely needed

2023-12-30 Thread Étienne Mollier
the package does not risk becoming team orphaned. [1]: https://github.com/EvolBioInf/andi/pull/17 For information, -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/3, please excuse my verbosity `-on air: Van der Graaf

Bug#1059716: libdivsufsort: packaging help likely needed

2023-12-30 Thread Étienne Mollier
the package does not risk becoming team orphaned. [1]: https://github.com/EvolBioInf/andi/pull/17 For information, -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/3, please excuse my verbosity `-on air: Van der Graaf

Bug#1059776: ITP: python-trx-python -- implementation of the trx file-format for tractography data

2023-12-31 Thread Étienne Mollier
Package: wnpp Severity: wishlist Owner: Étienne Mollier X-Debbugs-Cc: debian-de...@lists.debian.org X-Debbugs-Cc: debian-...@lists.debian.org * Package name: python-trx-python Version : 0.2.9 Upstream Contact: Francois Rheault * URL : https://github.com/tee-ar-ex/trx

Bug#1059776: ITP: python-trx-python -- implementation of the trx file-format for tractography data

2024-01-02 Thread Étienne Mollier
this case. Thank you for the suggestion, I sent a rejection request to ftpmaster and was going to make the necessary adjustments but it looks like we collided, so python-trx-python it is. Thanks to them for the prompt acceptance though! Have a good evening, :) -- .''`. Étienne Mollier : :' : pgp: 8f9

Bug#1054535: neuron: There is a compilation error for Neuron on the LoongArch machine.

2024-01-03 Thread Étienne Mollier
status/fetch.php?pkg=neuron=loong64=8.2.2-5=1704309241=1 Have a nice day, :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/0, please excuse my verbosity `-on air: Fish on Frday - Unreal signature.asc Description: PGP signature

Bug#1058661: dipy: slow (sometimes timing out) autopkgtest

2024-01-10 Thread Étienne Mollier
on3 version). I'm a bit wary to begin skipping tests for the first upload of the new upstream version, but I guess some trimming can be done in a second time to get the run time down to reasonable levels. Have a nice day, :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c

Bug#1058661: [Debian-med-packaging] Bug#1058661: dipy: slow (sometimes timing out) autopkgtest

2024-01-16 Thread Étienne Mollier
Étienne Mollier, on 2024-01-12: > Rebecca N. Palmer, on 2023-12-14: > > This autopkgtest, and particularly test_reconstruct_rumba, is slow enough > > that it sometimes times out and fails. I think this is varying hardware > > speed and not a random hang because failu

Bug#1060973: python-pbcore: FTBFS

2024-01-18 Thread Étienne Mollier
-18T18:13:24Z.build.xz Thanks for your quality assessment work, this is very useful to catch issues! Have a nice day, :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/4, please excuse my verbosity `-on air: Flying

Bug#1060207: [Debian-med-packaging] Bug#1060207: ncbi-acc-download: please remove extraneous dependency on python3-mock

2024-01-07 Thread Étienne Mollier
ush fixes now. Have a nice day, :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/0, please excuse my verbosity `-on air: Klaus Schulze - Nowhere - Now Here signature.asc Description: PGP signature

Bug#1060205: castxml: BD-Uninstallable: castxml build-depends on missing: libclang-17-dev:mips64el

2024-01-07 Thread Étienne Mollier
ps64el at the moment. Also, the llvm-toolchain-15 is not planned to ship with trixie if I trust #1058812. Have a nice day, :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/0, please excuse my verbosity `-on air: Apple Pie - L

Bug#1060176: [Debian-med-packaging] Bug#1060176: dipy: FTBFS on ppc64el: FAILED dipy/segment/tests/test_mrf.py::test_icm_square - AssertionError

2024-01-09 Thread Étienne Mollier
. That was a qemu build, and I'm not at risk of flaky test issue, but crossing fingers. Have a nice one, :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/2, please excuse my verbosity `-on air: The Inner Road - Dark Door

Bug#1060205: castxml: BD-Uninstallable: castxml build-depends on missing: libclang-17-dev:mips64el

2024-01-09 Thread Étienne Mollier
Hi Andreas, Andreas Tille, on 2024-01-09: > Am Sun, Jan 07, 2024 at 09:05:10PM +0100 schrieb Étienne Mollier: > > Thanks for the heads up, I'm afraid this is a bit out of hands > > right now. According to bug entries #1059465 and #1056116, > > llvm-toolchain-16 and -17 fail

Bug#1058661: [Debian-med-packaging] Bug#1058661: dipy: slow (sometimes timing out) autopkgtest

2024-01-12 Thread Étienne Mollier
e a nice day, :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/5, please excuse my verbosity `-on air: Fleesh - Burning Rope signature.asc Description: PGP signature

Bug#1054535: neuron: There is a compilation error for Neuron on the LoongArch machine.

2023-12-28 Thread Étienne Mollier
I am lacking the infrastructure to investigate further. Anyway, in hope this helps, -- .''`. Étienne Mollier : :' : gpg: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/1, please excuse my verbosity `-on air: Hecenia - Le Grimoire signature.asc Description: PGP signature

Bug#1015668: spades: ftbfs with LTO: supplemental

2023-12-03 Thread Étienne Mollier
ngine shown multiple results suggesting probable compiler bugs, notably as mentioned in upstream bug report[1], which itself redirects to bug Gcc#86490[2]. I'm considering an upload of spades which ensures lto builds are always disabled. [1]: https://github.com/ablab/spades/issues/1007 [2]: https://gcc.

Bug#1053509: shasta: autopkgtest regression on arm64: is memory suddenly not enough?

2023-12-03 Thread Étienne Mollier
he beginning of the test, and skip the run if the testbed couldn't meet the memory requirement for whatever reason. Note this may involve some trial and error. Have a nice Sunday, :) -- .''`. Étienne Mollier : :' : gpg: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev

Bug#1053509: [Debian-med-packaging] Bug#1053509: shasta: autopkgtest regression on arm64: is memory suddenly not enough?

2023-12-04 Thread Étienne Mollier
ion by giving options to use disk backed memory maps, although on first try it didn't look to reduce the commit memory consumption. Let's see if I can get somewhere… Have a nice day, :) -- .''`. Étienne Mollier : :' : gpg: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent fr

Bug#1053509: shasta: autopkgtest regression on arm64: is memory suddenly not enough?

2023-12-04 Thread Étienne Mollier
on the host, and the Ubuntu specific change (apparently, Steve Langasek disabled the first command of the test suite, which explains why there were no issues on this operating system). I will push an updated autopkgtest soon to close the issue. Have a nice day, :) -- .''`. Étienne Mollier

Bug#1062344: [Debian-med-packaging] Bug#1062344: htslib: NMU diff for 64-bit time_t transition

2024-02-01 Thread Étienne Mollier
forward. Have a nice day, :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/5, please excuse my verbosity `-on air: Agusa - Under bar himmel signature.asc Description: PGP signature

Bug#1022797: librocm-smi-dev: find_package(rocm_smi) fails due to missing liboam

2024-02-04 Thread Étienne Mollier
tigation. I reread through the bug entry, and I agree. If there are no blockers or objections, I'm also considering taking that opportunity to migrate the version 5.7 to unstable. Have a nice day, :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da

Bug#1022797: librocm-smi-dev: find_package(rocm_smi) fails due to missing liboam

2024-02-04 Thread Étienne Mollier
Control: severity -1 wishlist The package is uploaded. I reduce the severity to a wishlist item, as we will have a workaround in place. Have a nice day, :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/1, please

Bug#1060965: q2-feature-classifier: FTBFS due to qiime AttributeError: module 'bibtexparser' has no attribute 'bparser'

2024-01-19 Thread Étienne Mollier
parser = bp.bparser.BibTexParser() > E AttributeError: module 'bibtexparser' has no attribute 'bparser' Have a nice day, :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/2, please excuse my verbosity `- signature.asc Descrip

Bug#1060987: q2cli: FTBFS: AttributeError: module 'bibtexparser' has no attribute 'bparser'

2024-01-19 Thread Étienne Mollier
.py Have a nice day, :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/3, please excuse my verbosity `-on air: Fish - Little Man What Now? signature.asc Description: PGP signature

Bug#1055414: patch for bedtools FTBFS on i386 with "intersect" tool failure

2023-11-15 Thread Étienne Mollier
DEB_CXXFLAGS_MAINT_APPEND=-msse -mfpmath=sse endif %: -- .''`. Étienne Mollier : :' : gpg: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/5, please excuse my verbosity `- signature.asc

Bug#1055527: [Debian-med-packaging] Bug#1055527: castxml: Please update llvm/clang to llvm-17 in unstable

2023-11-07 Thread Étienne Mollier
Étienne Mollier, on 2023-11-07: > Étienne Mollier, on 2023-11-07: > > I'm also tempted by the unversionned llvm > > packages so these kind of version bumps do not go overlooked in > > the future, but need to check why the specific version was > >

Bug#1061208: Please upgrade to llvm-toolchain-17

2024-02-26 Thread Étienne Mollier
critical bug triggering the autoremoval is updated, e.g. when reporting an evolution of the situation in a new comment. Have a nice day, :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/2, please excuse my verbosity `- s

Bug#1062942: [Debian-med-packaging] Bug#1062942: mmlib: NMU diff for 64-bit time_t transition

2024-02-28 Thread Étienne Mollier
Benjamin Drung, on 2024-02-28: > Please find attached a final version of this patch for the time_t > transition. This patch is being uploaded to unstable. NMU acknowledged, thank you! :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `'

Bug#1061931: [Debian-med-packaging] Bug#1061931: biosquid: NMU diff for 64-bit time_t transition

2024-02-28 Thread Étienne Mollier
Steve Langasek, on 2024-02-28: > Please find attached a final version of this patch for the time_t > transition. This patch is being uploaded to unstable. NMU acknowledged, thank you! :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `'

Bug#1062602: [Debian-med-packaging] Bug#1062602: librcsb-core-wrapper: NMU diff for 64-bit time_t transition

2024-02-28 Thread Étienne Mollier
Benjamin Drung, on 2024-02-28: > Please find attached a final version of this patch for the time_t > transition. This patch is being uploaded to unstable. NMU acknowledged, thank you! :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `'

Bug#1062316: [Debian-med-packaging] Bug#1062316: libgkarrays: NMU diff for 64-bit time_t transition

2024-02-28 Thread Étienne Mollier
Benjamin Drung, on 2024-02-28: > Please find attached a final version of this patch for the time_t > transition. This patch is being uploaded to unstable. NMU acknowledged, thank you! :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `'

Bug#1062344: [Debian-med-packaging] Bug#1062344: htslib: NMU diff for 64-bit time_t transition

2024-02-28 Thread Étienne Mollier
rename does not go undone by accident. Have a nice day, :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/1, please excuse my verbosity `-on air: Caravan - Frozen Rose (I Don't Know Its Name A… signature.asc Descr

Bug#1062049: [Debian-med-packaging] Bug#1062049: gdcm: NMU diff for 64-bit time_t transition

2024-02-28 Thread Étienne Mollier
ce day, :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/1, please excuse my verbosity `-on air: Schysma - Time Man signature.asc Description: PGP signature

Bug#1062443: [Debian-med-packaging] Bug#1062443: igraph: NMU diff for 64-bit time_t transition

2024-02-28 Thread Étienne Mollier
Lukas Märdian, on 2024-02-28: > Please find attached a final version of this patch for the time_t > transition. This patch is being uploaded to unstable. NMU acknowledged in the VCS. Thank you! Have a nice day, :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 823

Bug#1062201: [Debian-med-packaging] Bug#1062201: gwyddion: NMU diff for 64-bit time_t transition

2024-02-28 Thread Étienne Mollier
Lukas Märdian, on 2024-02-28: > Please find attached a final version of this patch for the time_t > transition. This patch is being uploaded to unstable. Acknowledged in the VCS, thank you for your work on the 64-bit time_t transition! Have a nice day, :) -- .''`. Étienne M

Bug#1062022: [Debian-med-packaging] Bug#1062022: dcmtk: NMU diff for 64-bit time_t transition

2024-02-28 Thread Étienne Mollier
t risk being undone by accident. Have a nice day, :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/1, please excuse my verbosity `-on air: Arena - Returning The Curse signature.asc Description: PGP signature

Bug#1062037: camp: NMU diff for 64-bit time_t transition

2024-02-28 Thread Étienne Mollier
Steve Langasek, on 2024-02-28: > Please find attached a final version of this patch for the time_t > transition. This patch is being uploaded to unstable. NMU acknowledged in the VCS. Thank you for your work on the transition! Have a nice day, :) -- .''`. Étienne Mollier : :'

Bug#1064157: [Debian-med-packaging] Bug#1064157: jellyfish: NMU diff for 64-bit time_t transition

2024-02-28 Thread Étienne Mollier
Lukas Märdian, on 2024-02-28: > Please find attached a final version of this patch for the time_t > transition. This patch is being uploaded to unstable. NMU patch acknowledged, thanks! Have a nice day, :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793

Bug#1064147: ftbfs: test failures affecting Bio.SeqIO.SeqXmIIO

2024-02-28 Thread Étienne Mollier
the affected tests and reduce the bug severity, but this is not ideal. We'll see how things go, -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/1, please excuse my verbosity `- signature.asc Description: PGP signature

Bug#1062310: [Debian-med-packaging] Bug#1062310: libgdf: NMU diff for 64-bit time_t transition

2024-02-28 Thread Étienne Mollier
dental undoing of the change in the future. Have a nice day, :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/1, please excuse my verbosity `-on air: Harmony - Rain signature.asc Description: PGP signature

Bug#1062416: [Debian-med-packaging] Bug#1062416: libmems: NMU diff for 64-bit time_t transition

2024-02-28 Thread Étienne Mollier
Benjamin Drung, on 2024-02-28: > Please find attached a final version of this patch for the time_t > transition. This patch is being uploaded to unstable. Acknowledged in the VCS, thank you for the transition! :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 823

Bug#1062418: [Debian-med-packaging] Bug#1062418: libminc: NMU diff for 64-bit time_t transition

2024-02-28 Thread Étienne Mollier
Benjamin Drung, on 2024-02-28: > Please find attached a final version of this patch for the time_t > transition. This patch is being uploaded to unstable. NMU acknowledged, thanks! :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `'

Bug#1062417: [Debian-med-packaging] Bug#1062417: libmialm: NMU diff for 64-bit time_t transition

2024-02-28 Thread Étienne Mollier
Benjamin Drung, on 2024-02-28: > Please find attached a final version of this patch for the time_t > transition. This patch is being uploaded to unstable. Acknowledged, thank you! :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `'

Bug#1062619: [Debian-med-packaging] Bug#1062619: libsbml: NMU diff for 64-bit time_t transition

2024-02-28 Thread Étienne Mollier
Benjamin Drung, on 2024-02-28: > Please find attached a final version of this patch for the time_t > transition. This patch is being uploaded to unstable. NMU acknowledged, thank you! :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `'

Bug#1062427: [Debian-med-packaging] Bug#1062427: ghmm: NMU diff for 64-bit time_t transition

2024-02-28 Thread Étienne Mollier
Steve Langasek, on 2024-02-28: > Please find attached a final version of this patch for the time_t > transition. This patch is being uploaded to unstable. NMU acknowledged, thank you! :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `'

Bug#1062612: [Debian-med-packaging] Bug#1062612: librostlab: NMU diff for 64-bit time_t transition

2024-02-28 Thread Étienne Mollier
Benjamin Drung, on 2024-02-28: > Please find attached a final version of this patch for the time_t > transition. This patch is being uploaded to unstable. NMU acknowledged, thank you! :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `'

Bug#1062316: libgkarrays: NMU diff for 64-bit time_t transition

2024-03-02 Thread Étienne Mollier
aded to unstable. > > > > NMU acknowledged, thank you!  :) > > The upload was rejected, because the the version number 2.1.0+dfsg-4.1 > was used for the experimental upload. So I had to bump the version > number to 2.1.0+dfsg-4.2. Thanks for the notice, I updated the VCS tree a

Bug#1062757: [Debian-med-packaging] Bug#1062757: odil: NMU diff for 64-bit time_t transition

2024-03-02 Thread Étienne Mollier
Benjamin Drung, on 2024-02-29: > Please find attached a final version of this patch for the time_t > transition. This patch is being uploaded to unstable. NMU acknowledged, thanks! :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `'

Bug#1062525: [Debian-med-packaging] Bug#1062525: eegdev: NMU diff for 64-bit time_t transition

2024-03-02 Thread Étienne Mollier
mwhud...@fastmail.fm, on 2024-02-28: > Please find attached a final version of this patch for the time_t > transition. This patch is being uploaded to unstable. Thanks Michael, your NMU is inlined in Salsa. Have a nice day, :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d

Bug#1062403: marked as done (freecontact: NMU diff for 64-bit time_t transition)

2024-03-02 Thread Étienne Mollier
Have a nice day, :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/1, please excuse my verbosity `- signature.asc Description: PGP signature

Bug#1064147: ftbfs: test failures affecting Bio.SeqIO.SeqXmlIO

2024-03-10 Thread Étienne Mollier
a chance to migrate, -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/2, please excuse my verbosity `-on air: Genesis - Turn It on Again signature.asc Description: PGP signature

Bug#1064147: ftbfs: test failures affecting Bio.SeqIO.SeqXmlIO

2024-03-10 Thread Étienne Mollier
. -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/1, please excuse my verbosity `-on air: Fates Warning - From The Rooftops signature.asc Description: PGP signature

Bug#1065976: python-levenshtein: FTBFS on arm{el,hf}: Levenshtein/_levenshtein.c:749:15: error: implicit declaration of function ‘PyUnicode_AS_UNICODE’; did you mean ‘PyUnicode_AsUCS4’? [-Werror=impli

2024-03-10 Thread Étienne Mollier
Have a nice day, :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/4, please excuse my verbosity `- signature.asc Description: PGP signature

Bug#1066485: [Debian-med-packaging] Bug#1066485: volpack: diff for NMU version 1.0b3-9.1

2024-03-17 Thread Étienne Mollier
h which I agree, and inlined them in the VCS, so they will be preserved on further uploads. Please feel even free to reduce the delay to 0, if you like. Have a nice day, :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/

Bug#1067035: apache2-bin: rebuild for the 64-bit time_t migration is uninstallable

2024-03-17 Thread Étienne Mollier
til164 without 't' is no more present in the dependencies. Have a nice day, :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/1, please excuse my verbosity `- signature.asc Description: PGP signature

Bug#1067035: apache2-bin: rebuild for the 64-bit time_t migration is uninstallable

2024-03-17 Thread Étienne Mollier
w3m [www-browser]0.5.3+git20230121-2+b3 Versions of packages apache2-bin is related to: ii apache2 2.4.58-1+b1 ii apache2-bin 2.4.58-1+b1 -- no debconf information -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11

Bug#1066377: argtable2: FTBFS: arg_int.c:60:12: error: implicit declaration of functions

2024-03-25 Thread Étienne Mollier
Control: tag -1 + patch Hi Shachar, I wrapped up a patch to resolve #1066377, the recently caught build failure affecting argtable2. You will find the diff in attachment. Hope this helps, -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da

Bug#1066369: obitools: FTBFS: error: implicit declaration of function ‘heapsort’

2024-04-20 Thread Étienne Mollier
application binary interface in the first place. [1]: https://manpages.debian.org/bookworm/libbsd-dev/heapsort.3bsd.en.html [2]: https://manpages.debian.org/bookworm/manpages-fr-dev/qsort.3.fr.html Have a nice day, :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d

Bug#1069756: readability: build time test error: lxml.html.clean module is now a separate project lxml_html_clean

2024-04-26 Thread Étienne Mollier
tackling this! Have a nice day, :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/3, please excuse my verbosity `-on air: Saga - Give 'Em The Money signature.asc Description: PGP signature

Bug#1069691: [Debian-med-packaging] Bug#1069691: libmaus2: FTBFS on arm64: what(): AutoArray failed to allocate 1398102 elements (11184816 bytes)

2024-04-24 Thread Étienne Mollier
. I'd have to check how things go on porterbox next. [1]: https://buildd.debian.org/status/fetch.php?pkg=libmaus2=arm64=2.0.813%2Bds-3=1713977128=0 Have a nice day, :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/0

Bug#1069756: readability: build time test error: lxml.html.clean module is now a separate project lxml_html_clean

2024-04-24 Thread Étienne Mollier
offpunk autopkgtest[1], although that could be easily worked around by pulling the missing dependency there. [1]: https://ci.debian.net/packages/o/offpunk/unstable/amd64/44684161/ Have a nice day, :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' s

Bug#1062071: [Debian-med-packaging] Bug#1062071: genometools: NMU diff for 64-bit time_t transition

2024-04-28 Thread Étienne Mollier
Hi Steve, NMU for genometools 1.6.5+ds-2.1 acknowledged in the VCS, with a minor change to un-shadow Lukas Märdian experimental NMU earlier this year. Thanks for your work on the hairy time_t transition! Have a nice day, :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c

Bug#1069370: shasta: FTBFS: dpkg-shlibdeps: error: cannot continue due to the error above

2024-05-08 Thread Étienne Mollier
ful to see whether other options than setting the RPATH are acceptable. Otherwise dpkg-shlibdeps may have to be instructed to ignore shasta, which in turn will lead to manual maintenance of library dependencies in the package. I see if I can get somewhere… In hope this helps, -- .''`

Bug#1070334: libnet-frame-device-perl needs network access during build

2024-05-03 Thread Étienne Mollier
Parse errors: Bad plan. You planned 1 tests but ran 0. t/05-new-target.t (Wstat: 25856 (exited 101) Tests: 0 Failed: 0) Non-zero exit status: 101 Parse errors: Bad plan. You planned 1 tests but ran 0. Has someone an idea of better approach? Have a nice day, :)

Bug#1070334: libnet-frame-device-perl needs network access during build

2024-05-04 Thread Étienne Mollier
Control: tags -1 + patch Étienne Mollier, on 2024-05-03: > Has someone an idea of better approach? Answering to myself, the test suite does not actually attempt to access the Internet, but it does attempt to access the device on the build machine that can route by default to 1.1.

Bug#1069691: [Debian-med-packaging] Bug#1069691: libmaus2: FTBFS on arm64: what(): AutoArray failed to allocate 1398102 elements (11184816 bytes)

2024-05-12 Thread Étienne Mollier
Control: tags -1 + confirmed upstream Control: forwarded -1 https://gitlab.com/german.tischler/libmaus2/-/issues/40 In the end, I could reproduce the test failures affecting libmaus2 on amdahl and informed upstream. We'll see how things go. Have a nice day, :) -- .''`. Étienne Mollier

Bug#1070387: [Debian-med-packaging] Bug#1070387: gdcm: CVE-2024-25569 CVE-2024-22373 CVE-2024-22391

2024-05-05 Thread Étienne Mollier
ers to get gdcm fixed there too in upcoming point releases, if that helps. Have a nice day, :) -- .''`. Étienne Mollier : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/2, please excuse my verbosity `-on air: Alta Forma - Apocalyptus signature.

Bug#1070469: RM: python-pyppmd [s390x] -- ANAIS; big-endian architectures unsupported

2024-05-05 Thread Étienne Mollier
tch.php?pkg=python-pyppmd=s390x=1.1.0%2Bds-2=1714557172=0 If left as is, we suspect the package could corrupt user data and is is not fit for release on big-endian systems. It should be removed from the archive until such configuration is properly supported. Please remove python-pyppmd from s390

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