Bug#602243: Bug #602243: Change interpeter to /ur/bin/python

2011-05-11 Thread Andreas Tille
Hi Luca, there is no need for such a longish delay. However, it would be great if you could commit the changes to SVN (and tag the upload). The Debian Med SVN is granting commit permissions to any DD - so there should be no problem for you. Thanks for your effort and sorry that we did not

Bug#626352: texmaker should depend on texmaker-data, not recommend

2011-05-11 Thread Andreas Tille
Hi, besides the fact that I'm on de facto vaccation and will not be able to handle this bug in the next two weeks I think the reporter is not right here and the recommends is perfectly correct. On Wed, May 11, 2011 at 03:24:22PM +0700, Maia Kozheva wrote: However, I think texmaker-data should

Bug#626352: arguments for bug

2011-05-12 Thread Andreas Tille
On Wed, May 11, 2011 at 06:42:19PM +0200, أحمد المحمودي wrote: On Wed, May 11, 2011 at 03:27:51PM +0200, Tomáš Hnyk wrote: 2) icons are these files (on my system): texmaker-data: /usr/share/icons/hicolor/128x128/apps/texmaker128x128.png texmaker-data:

Bug#626512: texmaker: Autocompletion of \begin{...} statements gives two curly braces closing end{} statement

2011-05-12 Thread Andreas Tille
Hi Mark, thanks for your bug report. On Thu, May 12, 2011 at 04:18:08PM +0200, Mark Caglienzi wrote: Package: texmaker Version: 3.0-1 Severity: minor Can you please test with verison 3.0.2 from unstable. I can not reproduce this behaviour with the latest version. If I use the

Bug#626672: raxml: Uses -msse

2011-05-14 Thread Andreas Tille
Hi, I'm currently on vacation and can not fix this. However, any hint / patch / fix would be welcome how to make this portable for all archs. Kind regards Andreas. On Sat, May 14, 2011 at 10:36:25AM +0200, Kurt Roeckx wrote: Source: raxml Version: 7.2.6-1 Severity: grave Hi, It

Bug#622040: libgtkdatabox: diff for NMU version 1:0.9.1.1-3.2

2011-05-21 Thread Andreas Tille
Hi Luca, On Sat, May 21, 2011 at 12:50:04PM +0200, Luca Falavigna wrote: tags 622040 + patch pending thanks Dear maintainer, I've prepared an NMU for libgtkdatabox (versioned as 1:0.9.1.1-3.2) and uploaded it to DELAYED/2. Please feel free to tell me if I should delay it longer.

Bug#629344: ITP: plastimatch -- medical image reconstruction and registration

2011-06-05 Thread Andreas Tille
Hi Greg, I would like to add a long description which should be given in an ITP and which you can perfectly obtain from the Debian Med tasks page (which is currently available only at the testing site[1]) On Sun, Jun 05, 2011 at 02:48:51PM -0400, Greg Sharp wrote: Package: wnpp Severity:

Bug#629319: Version number is not allowing more recent versions to be downloaded

2011-06-05 Thread Andreas Tille
Hi, this is not a problem of the Debian package, but (most probably - I have not checked) a problem of the Ubuntu package (or your Build system including a Debian mirror). The epoch (1:) was needed because of using a different versioning scheme in the past. To make sure the newer versions

Bug#629869: debian-science: Preparations for the removal of the KDE3 and Qt3 libraries

2011-06-09 Thread Andreas Tille
Hi Nobuhiro, thanks for the bug report and the patch. Please be aware that the patch is not correct in so far as the debian/control file in Debian Pure Blends packages will be auto generated. So it would have been overriden by the auto generation process. However, I fixed the problem in SVN

Bug#629815: No rule to make target `/usr/lib/libdl.so'

2011-06-09 Thread Andreas Tille
On Thu, Jun 09, 2011 at 10:00:40AM +0200, Sven Joachim wrote: However, the problem I was facing in the not yet released package ginkocadx[1] seems to be quite common currently. It is in #629815 and some similar case happens in #618094 and thus I'm suspecting a general problem somehow. So

Bug#629815: Multiarch with cmake seems to cause FTBFS (Was: Bug#629815: No rule to make target `/usr/lib/libdl.so')

2011-06-09 Thread Andreas Tille
, Jun 09, 2011 at 01:02:56PM +0200, Sven Joachim wrote: On 2011-06-09 11:19 +0200, Andreas Tille wrote: On Thu, Jun 09, 2011 at 10:00:40AM +0200, Sven Joachim wrote: The problem is that libdl.so has been moved to the multiarch paths in libc6-dev 2.13-5. You must upgrade cmake to 2.8.4+dfsg

Bug#616901: mgltools-support: deprecation of dh_pycentral, please use dh_python2

2011-06-09 Thread Andreas Tille
Hi Steffen, the changelog in SVN is mentioning several new upstream versions which were not uploaded as package. I have no clue in how far it makes sense to base a bugfix on the recent source inside Debian. Would you mind either a) uploading a package which fits the versions of the other

Bug#616899: Bug#616901: mgltools-support: deprecation of dh_pycentral, please use dh_python2

2011-06-09 Thread Andreas Tille
Sorry, the remark below was filed against the wron package / bug. I intended to post against 616899 package mgltools-scenario. Sorry for the confusion Andreas. - Forwarded message from Andreas Tille andr...@an3as.eu - X-Debian-PR-Message: followup 616901 X-Debian-PR-Package

Bug#629815: No rule to make target `/usr/lib/libdl.so'

2011-06-09 Thread Andreas Tille
On Thu, Jun 09, 2011 at 01:02:56PM +0200, Sven Joachim wrote: The problem is that libdl.so has been moved to the multiarch paths in libc6-dev 2.13-5. You must upgrade cmake to 2.8.4+dfsg.1-3, have you done that already? I'm building an unstable pbuilder chroot. It is using the cmake

Bug#630116: ITP: dicompyler -- radiation therapy research platform

2011-06-11 Thread Andreas Tille
Package: wnpp Severity: wishlist Owner: Andreas Tille ti...@debian.org * Package name: dicompyler Version : 0.4~a2 Upstream Author : Aditya Panchal apanc...@bastula.org * URL : http://code.google.com/p/dicompyler/ * License : BSD Programming Lang: Python

Bug#622189: RM: resmed-doc -- ROM; The documention is outdated and orphaned upstream

2011-04-10 Thread Andreas Tille
Package: ftp.debian.org Severity: normal Hi, please remove the resmed-doc package. It has no real use any more. The package med-doc recommends resmed-doc but will be updated soon to drop this recommends. Kind regards and thanks for your ftpmaster work Andreas. -- System Information:

Bug#565004: ftbfs with gcc-4.5 bugs

2011-04-11 Thread Andreas Tille
On Wed, 13 Jan 2010, Nelson A. de Oliveira wrote: But I want to confirm if it's indeed a problem with gcc 4.5 (and thus nothing will be necessary to change on our side) or if it's a problem in the code (that is now triggered by a stricter compiler). Better ask than wrongly and doubtfully

Bug#624435: ITP: raxml -- Randomized Axelerated Maximum Likelihood of phylogenetic trees

2011-04-28 Thread Andreas Tille
Package: wnpp Severity: wishlist Owner: Andreas Tille ti...@debian.org * Package name: raxml Version : 7.2.6 Upstream Author : Alexandros Stamatakis alexandros.stamata...@epfl.ch * URL : http://wwwkramer.in.tum.de/exelixis/software.html * License : GPL

Bug#623638: arb: is the libxp dependency necessary?

2011-04-29 Thread Andreas Tille
Hi, On Fri, Apr 29, 2011 at 04:20:38PM +0200, Ralf Westram wrote: libxp dependency has been removed with http://bugs.arb-home.de/changeset/7490 There was no real dependency - it was just a useless relict. Is there any chance of a soonish release which would solve the problem easily. Kind

Bug#625162: embassy-domainatrix: FTBFS: configure: error: C compiler cannot create executables

2011-05-02 Thread Andreas Tille
Hi Steffen. I'm not convinced that simply waiting for a new upstream is the proper strategy to solve this problem. It might be that upstream will release with gcc-4.5 buildable code and is not aware of the problem. The minimum to do is to foreward it upstream - in some cases a fix is not that

Bug#624906: autodock-vina: FTBFS: ../../../src/main/main.cpp:27:44: error: no matching function for call to 'boost::filesystem3::path::path(const string, bool ()(const string))'

2011-05-02 Thread Andreas Tille
Hi, I have the suspicion that this is rather a problem of the boost library then of autodock-vina. I think according to your experience this should be observed in other packages as well. If not, could you give some hint for a fix? Kind regards Andreas. On Mon, May 02, 2011 at

Bug#625294: liblocale-gettext-perl: Not installable in sid because of perlapi-5.10.0 depends

2011-05-03 Thread Andreas Tille
Package: liblocale-gettext-perl Version: 1.05-4 Severity: grave Justification: renders package unusable Hi, I tried to install help2man which depends from liblocale-gettext-perl. However, # apt-get install liblocale-gettext-perl Reading package lists... Done Building dependency tree

Bug#625562: figtree: fails to start

2011-05-04 Thread Andreas Tille
Hi, thanks for the bug report. On Wed, May 04, 2011 at 01:19:51PM +0200, Pvt. Pyle wrote: Output (translation in parentheses): Can you perhaps try to creat this with LANG/LANGUAGE/LC_ALL unset to get English output? pvt_pyle@usarmy:~$ figtree /usr/bin/figtree: línea 1: PK: no se encontró

Bug#625562: Help needed: Bug#625562: figtree: fails to start

2011-05-04 Thread Andreas Tille
-Package: figtree X-Debian-PR-Keywords: upstream X-Debian-PR-Source: figtree From: Carlos Reding jambh...@gmx.com To: Andreas Tille ti...@debian.org Date: Wed, 04 May 2011 17:29:02 +0200 Cc: 625...@bugs.debian.org Subject: Bug#625562: figtree: fails to start Hi, there you have the english output, I set

Bug#625562: Help needed: Bug#625562: figtree: fails to start

2011-05-04 Thread Andreas Tille
On Wed, May 04, 2011 at 12:17:55PM -0700, Russ Allbery wrote: /usr/bin/figtree is a symlink to an executable JAR file. Yes, this is what I have seen in other packages and what seemed to me some suggested way to go. I believe in order for executable JAR files to be passed to Java properly, the

Bug#602243: Bug #602243: Change interpeter to /ur/bin/python

2011-05-09 Thread Andreas Tille
Hi Luca, thanks for your work on Python migration. On Sun, May 08, 2011 at 12:08:55PM +0200, Luca Falavigna wrote: user debian-pyt...@lists.debian.org usertags 602243 + python2.5-removal severity 602243 important thanks Raising severity as python2.5 is going to be removed. Andreas,

Bug#380146: g2: requesting removal

2011-02-20 Thread Andreas Tille
Hi, On Sun, Feb 20, 2011 at 06:43:49PM +0100, Alexander Reichle-Schmehl wrote: Hi! * Lucas Nussbaum lu...@debian.org [110219 18:55]: The g2 package has been orphaned for a long time, and nobody has been willing to take it over. I am therefore requesting its removal from Debian.

Bug#632002: ITP: pvclust -- Hierarchical Clustering with P-Values via Multiscale Bootstrap

2011-06-29 Thread Andreas Tille
Hi Charles, for me this looks like a precondition for something else but not directly something for the tasks pages. If I'm wrong, could you insert it on the proper place? Kind regards Andreas. On Wed, Jun 29, 2011 at 01:01:43PM +0900, Charles Plessy wrote: Package: wnpp Severity:

Bug#625120: clonalframe: FTBFS: src/move_hidden.cpp:169:62: error: taking address of temporary [-fpermissive]

2011-06-29 Thread Andreas Tille
Hi, sorry for the late reply to this bug. I can reproduce the problem on my side but I'm not finally sure that this is really a problem of clonalframe or whether it is a bad coincidence with libgsl0-dev. The line in question where the problem occures is: src/move_hidden.cpp:423:59: error:

Bug#630994: OpenMPI-bin missing on some arches (Was: mrbayes-mpi: uninstallable on mipsen and s390)

2011-06-29 Thread Andreas Tille
Hi, Your package is uninstallable on some archs: mrbayes-mpi/mips unsatisfiable Depends: openmpi-bin mrbayes-mpi/mipsel unsatisfiable Depends: openmpi-bin mrbayes-mpi/s390 unsatisfiable Depends: openmpi-bin I admit I'm not so comfortable with these architectures. Is there any

Bug#632460: dicomscope: hardcoded dependency on libssl0.9.8

2011-07-02 Thread Andreas Tille
Hi Mark, On Sat, Jul 02, 2011 at 04:56:25PM +0100, Mark Hymers wrote: I've uploaded an NMU (6.3.0-1.1) to DELAYED/7-days. Feel free to cancel the upload with a newer one in the next week if you'd rather. Thanks for the NMU - IMHO there is no need to override your DELAYED upload. However,

Bug#629815: Bug#632406: FTBFS: configure fails, missing 'gdcmConfigure.h'

2011-07-04 Thread Andreas Tille
Hi Cyril, On Mon, Jul 04, 2011 at 03:05:30PM +0200, Cyril Brulebois wrote: tag 632406 patch thanks Philipp Kern pk...@debian.org (04/07/2011): so this would potentially block the upcoming poppler transition. We are unable to rebuild gdcm due to bug #632406 Here's a *NASTY* patch

Bug#637430: Licensed only to individuals; not distributable by us?

2011-08-11 Thread Andreas Tille
the answer to the copyright file. Best regards, Alexander Am 10.08.2011 16:05, schrieb Andreas Tille: Hi Alexander, hmmm, I can understand your point, but some other ftpmaster of your team has considered this differently because the software is just in Debian and we just splitted

Bug#639995: epigrass does not start on GNOME

2011-09-02 Thread Andreas Tille
On Fri, Sep 02, 2011 at 11:21:49AM +0200, melchiaros wrote: I´ve cleaned up(complete remove and install again) all direct dependent packages of epigrass, but it keeps at console: epigrass Traceback (most recent call last): File /usr/bin/epigrass, line 5, in module from pkg_resources

Bug#640302: seqan - New upstream version

2011-09-07 Thread Andreas Tille
Hi, On Wed, Sep 07, 2011 at 09:38:58AM +0900, Charles Plessy wrote: Not being the maintainer nor a user of SeqAn applications, I do not feel like renaming programs. But the lead uploader looks MIA… Soeren in CC ... For the moment, I will defer any decision and propose to distribute the

Bug#636345: Any reason not to upload packaging status in SVN?

2011-09-09 Thread Andreas Tille
Hi, JOSM is currently crashing all the time for me - my guess is that some plugins do not fit the packaged version. I checked packaging in SVN and it seems somehow ready for upload. Any reason for waiting? If yes I probably should open a new more qualified bug report with the exact problem

Bug#506992: vtk: diff for NMU version 5.6.1-6.1

2011-08-22 Thread Andreas Tille
On Mon, Aug 22, 2011 at 07:22:54PM +0200, Michael Schutte wrote: On Mon, Aug 22, 2011 at 06:16:59PM +0200, Michael Schutte wrote: I just uploaded vtk to DELAYED/0. For the record, the updated package was rejected due to #638883. Uhmmm. :-( IMHO it is quite straightforeward to verify sqlite

Bug#639069: wordnet: FTBFS: dictzip -k goldendict-wordnet.dsl freezes

2011-08-24 Thread Andreas Tille
Hi Dmitry, could you please care for this problem. I do not know anything about this ruby using goldendict stuff. :-( Kind regards Andreas. On Tue, Aug 23, 2011 at 11:08:17PM +0200, Sylvestre Ledru wrote: Source: wordnet Version: 1:3.0-25 Severity: serious Tags: wheezy sid User:

Bug#639069: wordnet: FTBFS: dictzip -k goldendict-wordnet.dsl freezes

2011-08-24 Thread Andreas Tille
Hi, On Wed, Aug 24, 2011 at 11:58:31AM +0400, Dmitry E. Oboukhov wrote: This isn't our bug. This is a buildd bug (but this isn't buildd bug this is a installation-specific settings bug): If it has not enogh memory (build process requires more than 1G RAM) it will swap and hang up. While this

Bug#639473: plr: Please move from postgresql-8.4 to postgresql-9.1

2011-08-29 Thread Andreas Tille
Hi, Christoph Berg has recently added himself as co-maintainer. Christoph, I'd be quite happy if you would take over completely. I do not use this package any more and would be in favour of handing it over. Kind regards Andreas. On Sat, Aug 27, 2011 at 03:31:49PM +0200, Martin Pitt

Bug#639995: epigrass does not start on GNOME

2011-09-01 Thread Andreas Tille
Hi, thanks for your QA effort you are obviosely doing on random packages. On Thu, Sep 01, 2011 at 02:19:11PM +0200, melchiaros wrote: Package: epigrass Version: 2.0.4-1 Severity: grave Justification: renders package unusable Dear Maintainer, I´ve installed epigrass 2.0.4-1 from sid.

Bug#639996: Bug#639996: fastdnaml is not able to start in GNOME

2011-09-01 Thread Andreas Tille
Hi, On Thu, Sep 01, 2011 at 10:25:37PM +0900, Charles Plessy wrote: Indeed, fastdnaml, tree-puzzle, and the fastlink programs do not start when launched from the freedesktop menu in GNOME, and therefore probably in KDE and XFCE as well (not tested). These programs are simple command line

Bug#639996: Bug#639996: fastdnaml is not able to start in GNOME

2011-09-01 Thread Andreas Tille
On Thu, Sep 01, 2011 at 04:21:16PM +0200, melchiaros wrote: These programs are simple command line programs so what exactly should we expect? The freedesktop menu should just open a terminal and call the program - nothing else. Is there a way to implement this? It may be helpful to look

Bug#639996: Bug#639996: Bug#639996: fastdnaml is not able to start in GNOME

2011-09-01 Thread Andreas Tille
On Thu, Sep 01, 2011 at 03:47:18PM +0100, Tim Booth wrote: There is an icon for fastDNAml in BL6, but it serves absolutely no useful function whatsoever, since all it does is to bring up a terminal and show the version of fastDNAml which is installed. So I've made a note to remove the icon

Bug#639996: fastdnaml is not able to start in GNOME

2011-09-02 Thread Andreas Tille
On Thu, Sep 01, 2011 at 04:45:12PM +0100, Tim Booth wrote: I'm not sure about having icons in the Applications menu that just bring up documentation. I'm not sure as well - that's the reason why I did not pushed more. It just makes more sense than bringing up a frustrating terminal which is

Bug#639996: fastdnaml is not able to start in GNOME

2011-09-02 Thread Andreas Tille
On Thu, Sep 01, 2011 at 05:19:18PM +0200, melchiaros wrote: You have two choics: 1.Separate command line programs completely from the GUI one: - than there should be no entries in GNOME menu for the terminal programs - only entries for GUI ones. Who need terminal programs have to go to the

Bug#639996: Bug#639996: Bug#639996: fastdnaml is not able to start in GNOME

2011-09-02 Thread Andreas Tille
On Fri, Sep 02, 2011 at 09:23:28AM +0900, Charles Plessy wrote: Still, for the command-line programs, I tend to start a terminal and type them in there, instead of opening a terminal running them through a menu entry. Yes. I wrote my first response without having a deeper look at fastDNAml.

Bug#639995: epigrass does not start on GNOME

2011-09-02 Thread Andreas Tille
. On Thu, Sep 01, 2011 at 03:41:23PM +0200, Andreas Tille wrote: Hi, thanks for your QA effort you are obviosely doing on random packages. On Thu, Sep 01, 2011 at 02:19:11PM +0200, melchiaros wrote: Package: epigrass Version: 2.0.4-1 Severity: grave Justification: renders package

Bug#640027: ITP: openslide -- library to read virtual slides

2011-09-02 Thread Andreas Tille
Hi Mathieu, could you please be a bit more verbose about slide images and in what field they are known as virtual slides? Kind regards Andreas. On Thu, Sep 01, 2011 at 06:05:26PM +0200, Mathieu Malaterre wrote: Package: wnpp Severity: wishlist Owner: Mathieu Malaterre

Bug#641447: ITP: netcdf-java -- Java interface to NetCDF files

2011-09-14 Thread Andreas Tille
Hi, On Tue, Sep 13, 2011 at 03:59:16PM +0200, Mathieu Malaterre wrote: Description : Java interface to NetCDF files The NetCDF-Java library implements a Common Data Model (CDM), a generalization of the NetCDF, OpenDAP and HDF5 data models. The library is a prototype for the

Bug#642016: Suggest to remove molphy from Debian (Was: Bug#642016: some functions return values implicitly converted to pointer)

2011-09-18 Thread Andreas Tille
Hi, I somehow feel this is the right moment to let molphy die. This non-free, non-maintained upstream piece of very old code just drained a lot of my time to fix totally broken code. While arb rdepends from molphy (actually provides its own copy with other problems) I would patch arb in a way

Bug#636869: vmtk: FTBFS on all plateforms: No rule to make target `/usr/lib/libpng.so'

2011-08-08 Thread Andreas Tille
On Mon, Aug 08, 2011 at 03:35:25PM +0200, Sylvestre Ledru wrote: Le lundi 08 août 2011 à 15:31 +0200, Johannes Ring a écrit : Hi Sylvestre, make[3]: *** No rule to make target `/usr/lib/libpng.so', needed by `bin/libvtkvmtkComputationalGeometry.so.0.9.0'. Stop. make[3]: Leaving

Bug#636869: vmtk: FTBFS on all plateforms: No rule to make target `/usr/lib/libpng.so'

2011-08-09 Thread Andreas Tille
On Tue, Aug 09, 2011 at 12:04:58PM +0200, trophime wrote: http://darktable.git.sourceforge.net/git/gitweb.cgi?p=darktable/darktable;a=commitdiff_plain;h=2fddc3b063bf0b960a2b079649f66fae7530c0c6 This does not work The problem comes from VTKLibraryDepends.cmake in libvtk5-dev which contains

Bug#637338: debian-i18n: [DDTP] Please add support for Serbian language

2011-08-10 Thread Andreas Tille
Package: debian-i18n Severity: wishlist Hi Debian I18N Team, at DebConf we had several people from Serbia and it seems logical that this boils down to some volunteers wanting to do Serbian translations. I've got an offer from Karolina who just did some translation for D-I and now wants to do

Bug#637338: Just to say hello

2011-08-10 Thread Andreas Tille
Hi Karolina, is it correct that the language code for Serbian language is 'sr'? Please confirm straight to the bug address (in CC) to let i18n people know. Kind regards Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a

Bug#637338: debian-i18n: [DDTP] Please add support for Serbian language

2011-08-10 Thread Andreas Tille
On Wed, Aug 10, 2011 at 07:37:46PM +0200, Christian PERRIER wrote: PS: working on packages in the base system in the DDTP, is also important, not only those of Debian Med Sure - but I expect this will happen as well once the SR translation effort has started ... Kind regards Andreas.

Bug#644137: ITP: ruby-cassiopee -- provide methods to search exact match or approximate matches with Hamming or edit distance

2011-10-05 Thread Andreas Tille
Hi Olivier, On Mon, Oct 03, 2011 at 09:44:09AM +0200, Olivier Sallou wrote: Package: wnpp Severity: wishlist Owner: Olivier Sallou olivier.sal...@irisa.fr * Package name: ruby-cassiopee I guess you are packaging these Ruby libraries as preconditions for some biological program. WOuld

Bug#628106: ITP: ginkgocadx -- Medical Imaging Software and complete DICOM Viewer

2011-05-27 Thread Andreas Tille
Package: wnpp Severity: wishlist Owner: Andreas Tille ti...@debian.org * Package name: ginkgocadx Version : 2.4.1.1 Upstream Author : Carlos Barrales Ruiz carlos.barra...@metaemotion.com * URL : http://ginkgo-cadx.com/ * License : LGPL-2+ Programming Lang: C

Bug#628762: mc: Unable to browse deb archives

2011-06-01 Thread Andreas Tille
Package: mc Version: 3:4.7.0.9-1 Severity: normal Hello, if I press Enter on a *.deb archive to browse its content in my I get a red error window saying Cannot parse: path_to_.deb 1 CONTENTS/ I observe this effect at least on two different machines running current

Bug#612035: [Pkg-phototools-devel] Bug#612035: vulnerability: rewrite arbitrary user file

2011-07-08 Thread Andreas Tille
/debian/changelog +++ feh-1.3.4.dfsg.1/debian/changelog @@ -1,3 +1,9 @@ +feh (1.3.4.dfsg.1-1lenny1) unstable; urgency=low + + * Security fix (Closes: #612035) + + -- Andreas Tille ti...@debian.org Fri, 08 Jul 2011 15:59:53 +0200 + feh (1.3.4.dfsg.1-1) unstable; urgency=low * acknowledge NMU

Bug#633562: Please add additional astronomy packages

2011-07-11 Thread Andreas Tille
On Mon, Jul 11, 2011 at 05:55:54PM +0200, Luk Claes wrote: Package: science-astronomy Version: 0.13 Severity: wishlist Hi Not sure how you build the lists of packages in a task, though the science-astronomy one seems to miss a few ones: If you are not sure you might like to have a look

Bug#633749: [PyHealthcare] ANN: python-hl7 0.2.0

2011-07-13 Thread Andreas Tille
Hi, thanks to Karsten for the forewarding! On Wed, Jul 13, 2011 at 02:09:08PM +0200, Karsten Hilbert wrote: On Wed, Jul 13, 2011 at 06:49:27AM -0500, John Paulett wrote: I just submitted an ITP to package python-hl7 for Debian. Thanks ! I CCed the Debian Med mailing list so the

Bug#633749: [PyHealthcare] ANN: python-hl7 0.2.0

2011-07-13 Thread Andreas Tille
Hi John, On Wed, Jul 13, 2011 at 08:17:27AM -0500, John Paulett wrote: Putting this under the Debian Med team sounds good to me. I have only worked with the Python Modules Team before, so I will review the policies you referenced o make sure I package it properly. I will send an RFS to the

Bug#633947: gnumed-client: Please Dep: ginkgocadx

2011-07-18 Thread Andreas Tille
Hi, On Fri, Jul 15, 2011 at 12:37:34PM +0200, Karsten Hilbert wrote: Package: gnumed-client Version: 0.9.7-1 Severity: wishlist Now that Ginkgo CADx is available, please make us Depend on it. Fixed in SVN - just tell me if you prefer an upload before next new upstream version. Kind

Bug#629843: RM: xview -- RoQA; orphaned, obsolete

2011-07-25 Thread Andreas Tille
Hi, On Mon, Jul 25, 2011 at 11:51:27AM +0200, Moritz Mühlenhoff wrote: However, the maintainers don't seem to have enabled autobuilding for non-free, CCing Andreas Tille. the flag XS-Autobuild: yes is set for a long time and I wrote the mail to the non-free maintainers so long time ago

Bug#660208: Any interest in this?

2012-06-24 Thread Andreas Tille
Hi, I can confirm that the script Michael was presenting looks really promising and I would consider it as a really helpful tool also for the Debian Med team. Kind regards Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a

Bug#679459: packaging-tutorial: Please find a better example package

2012-06-28 Thread Andreas Tille
Package: packaging-tutorial Severity: minor Hi, I would regard dash as a quite bad example for packaging beginners. IMHO the rules file should use short dh and I guess debian/source/format: 3.0 (quilt) would be a good idea. For the sake of finding a better example and found the hello package a

Bug#679990: ITP: clipper -- object oriented development kit for crystallographic computing

2012-07-03 Thread Andreas Tille
Hi Radostan, would you consider maintaining this in Debian Science team? BTW, clipper is a name that older people like me would connect rather to databases than crystallography. I do not know whether this is an issue - just mentioning it. Kind regards Andreas. On Mon, Jul 02, 2012 at

Bug#680106: ITP: profisis -- Protein binding sites prediction (ISIS)

2012-07-04 Thread Andreas Tille
Hi, this sounds like a pretty interesting target for the Debian Med team. Would you consider joining the team and get support for sponsering and technical help if needed? Kind regards Andreas. On Tue, Jul 03, 2012 at 04:06:09PM +, ced...@gmx.ca wrote: Package: wnpp Severity:

Bug#680140: ITP: profbval -- PROFbval is a method for predicting residue mobility based on amino-acid sequence.

2012-07-04 Thread Andreas Tille
Hi, this sounds like a pretty interesting target for the Debian Med team. Would you consider joining the team and get support for sponsering and technical help if needed? Having written this text today the second time I suspect some connection to RostLab students. Is this correct? Kind regards

Bug#680087: ITP: openmm -- library for molecular dynamics

2012-07-04 Thread Andreas Tille
Hi, check out how fast this ended up on the tasks pages: http://debian-med.debian.net/tasks/bio-dev#libopenmm4-dev So it is a good idea to prepare your package in VCS when issuing an ITP bug. DebiChem might also want to add a Dependency to their tasks. Kind regards Andreas. On Tue,

Bug#679459: closed by Lucas Nussbaum lu...@debian.org (Re: Bug#679459: packaging-tutorial: Please find a better example package)

2012-07-04 Thread Andreas Tille
Hi, On Wed, Jul 04, 2012 at 09:20:05AM +, Lucas Nussbaum lu...@debian.org wrote: I think that dash is a reasonable example at this stage, given that: (1) it is actually useful You mean useful as a package or as an example? (2) it introduces an importunity to talk about Debian's

Bug#679407: Blitz++: update to version 0.10

2012-07-05 Thread Andreas Tille
Hi, any volunteer to do this? The package is team maintained and I *never* had any particular personal interest in this package - just did it to do somebody a favour. I'd volunteer to take over sponsering if somebody prepares a patch in SVN (or moves the package to git.debian.org - at the

Bug#680367: ITP: norsp -- predictor of non-regular secondary structure

2012-07-06 Thread Andreas Tille
Hi, thanks for the ITP in the Rostlab-packaging effort. I have a slight remark: The short description sounds quite generic and it is not easy to guess from this that it is targeting at biologists. It possibly could enhanced somehow like this Description : predictor of non-regular

Bug#680484: gmap and scotch: error when trying to install together

2012-07-06 Thread Andreas Tille
On Fri, Jul 06, 2012 at 05:47:01PM +0200, trophime wrote: PS: for more information about the detection of file overwrite errors of this kind see http://edos.debian.net/file-overwrites/. Hi, I just upload a fix on Debian science git. Hope it helps From my perspective that's actually

Bug#680798: sitplus: FTBFS: build-dependency not installable: libpoco-dev

2012-07-09 Thread Andreas Tille
Hi, I wonder what this problem might be sitplus as well as libpoco-dev are in unstable. I can not see what action needs to be done here. Please explain. Kind regards Andreas. On Sun, Jul 08, 2012 at 07:01:32PM +0200, Lucas Nussbaum wrote: Source: sitplus Version: 1.0.3-3 Severity:

Bug#681108: ITP: norsnet -- NORSnet - identifies unstructured loops from sequence

2012-07-11 Thread Andreas Tille
Hi, thanks for the ITP. Please make sure the short description would be easy to dectect as relevant for biological research. There are a lot of sequences out there. Some kind of s/from sequence/from protein sequence/ to get Description: NORSnet - identifies unstructured loops from

Bug#675061: ruby-bio: Please include attached citation information

2012-05-29 Thread Andreas Tille
Package: ruby-bio Severity: wishlist Hi, currently in Debian Med we are running some effort to provide citation information to packages to enhance the visibility of scientists inside Debian. Currently this information is used to create a general Debian BibTeX file (see [1]) rather as a proof of

Bug#675061: Acknowledgement (ruby-bio: Please include attached citation information)

2012-05-29 Thread Andreas Tille
according to +https://wiki.debian.org/UpstreamMetadata + + -- Andreas Tille ti...@debian.org Tue, 29 May 2012 17:39:39 +0200 + ruby-bio (1.4.2-2) unstable; urgency=low * Remove some tests depending on a access to the Internet. Closes: #654985 diff --git a/debian/upstream b/debian/upstream

Bug#658139: May be ITP: mime-support-extra to close #658139 (Was: Breaking programs because a not yet implemented solution exists in theory)

2012-05-31 Thread Andreas Tille
Hi, On Wed, May 02, 2012 at 03:16:08PM +0100, Ben Hutchings wrote: I'm also not seeing GNOME applications as file type handlers in Akregator (KDE application). So I'm not sure this is even 'just' a problem for text-mode applications. I have no idea whether the solution proposed below could

Bug#497779: May be ITP: mime-support-extra to close #658139 (Was: Breaking programs because a not yet implemented solution exists in theory)

2012-06-01 Thread Andreas Tille
Hi, On Thu, May 31, 2012 at 10:56:50PM +0200, Michael Biebl wrote: On 31.05.2012 21:35, Andreas Tille wrote: In any case the idea is to collect issues of broken mime support where maintainers are unable / not willing to respect Debian policy 9.7. Adding more entries is simple: Just add

Bug#675500: d-shlibs: Please add substitution rule for libQtCore4-dev

2012-06-01 Thread Andreas Tille
Package: d-shlibs Severity: wishlist Tags: patch Hi, please add the following patch $ diff -u /usr/bin/d-devlibdeps d-devlibdeps --- /usr/bin/d-devlibdeps 2012-05-08 16:17:17.0 +0200 +++ d-devlibdeps2012-06-01 17:37:37.0 +0200 @@ -129,6 +129,7 @@ -e

Bug#675919: ITP: libmtj-java -- Java library for developing numerical applications

2012-06-04 Thread Andreas Tille
Package: wnpp Severity: wishlist Owner: Andreas Tille ti...@debian.org * Package name: libmtj-java Version : 0.9.14 Upstream Author : Sam Halliday sam.halli...@gmail.com * URL : http://code.google.com/p/matrix-toolkits-java * License : LGPL-3+ Programming

Bug#675534: dict-wn: fails to install: invoke-rc.d: unknown initscript, /etc/init.d/dictd not found

2012-06-04 Thread Andreas Tille
Hi, as far as I can see this is rather a consequence of #607638 which hardly can be closed due to the fact that it is in stable. As far as I can see the bug is *not* found in Version: 1:3.0-27. So what would you actually suggest to close this bug? Kind regards Andreas. On Sat, Jun

Bug#675696: science-engineering: typos in package description

2012-06-04 Thread Andreas Tille
Hi, thanks for reporting and fixing. Just to let you know: I'll upload new metapackages *after* freeze because at this time the complete set of packages in the next Debian release is fixed. This is the usual procedure for the Blends packages and the release team should be aware of this. Kind

Bug#678105: RM: r-cran-qvalue -- ROM; Package was move upstream from CRAN to BioConductor - Debian package follows naming scheme of R packages

2012-06-19 Thread Andreas Tille
Package: ftp.debian.org Severity: normal Hi, the package r-bioc-qvalue replaces r-cran-qvalue so please remove the later. Kind regards and thanks for your nice work Andreas. -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble?

Bug#673826: tipptrainer: Support input with compose key

2012-05-21 Thread Andreas Tille
Hi Marco, just to let you know: Tipptrainer was removed from Debian because it is not maintained upstream any more and we do not have any power to work on its code. We also can not fix bugs of severity normal in stable Debian - so there are no chances to fix this problem ... except if you try to

Bug#672015: add patch, uploaded to delayed/5

2012-05-22 Thread Andreas Tille
Thanks for the patch and the upload. I have overriden the delayed NMU by some changes which did reside in SVN and I also added hardening flags. Kind regards Andreas. On Tue, May 22, 2012 at 05:52:49PM +0800, Matthias Klose wrote: tags 672015 + patch pending thanks diff -Nru

Bug#672015: Processing of libhmsbeagle_1.0-5.1_amd64.changes

2012-05-23 Thread Andreas Tille
Hi Matthias, is there any point in ignoring our fix in SVN and the discussion with upstream about this issue and a new upstream version? Not that I mind if you NMU packages other people are dealing with which is obviosely documented in BTS (I admit the fixed tag should have been set) but I'd

Bug#672015: Build issue when building with gcc-4.7

2012-05-23 Thread Andreas Tille
help if you answer the question below. Kind regards Andreas. On Thu, May 10, 2012 at 11:59:38AM +0200, Andreas Tille wrote: Hi, when building libhmsbeagle using gcc version 4.7 you get a build error which can be easily fixed (see patch in Debian Med SVN[1]) Before I upload

Bug#674422: ITP: libmath-tamuanova-perl -- Perl extension for the tamuanova library

2012-05-24 Thread Andreas Tille
On Thu, May 24, 2012 at 04:08:25PM +0200, Vincent Danjean wrote: Note: this is a small wrapper to call functions of tamuanova (already packaged for a long time) from perl programs. It will be required for the new version of altree (another Debian package). Great - thanks for working on altree

Bug#681713: lintian: Please add a test which checks Vcs-Browser headers for hardcoded revisions/commits

2012-07-16 Thread Andreas Tille
Hi, On Sun, Jul 15, 2012 at 09:31:47PM +0200, Axel Beckert wrote: today I noticed that the Vcs-Browser header of the debian-junior source debian-junior was just fixed (and uploaded). package included query string ?rev=0sc=0 which leads to an empty view of the repository (due to containing no

Bug#681764: RM: cdd -- ROM; Outdated and replaced

2012-07-16 Thread Andreas Tille
Package: ftp.debian.org Severity: normal I just got a hint that the source package cdd survived somehow and is keeping the binary package cdd-doc alive[1] (even if the other two binary packages cdd-common and cdd-dev are replaced by convinience upgrade packages created by the source package

Bug#680484: gmap and scotch: error when trying to install together

2012-07-16 Thread Andreas Tille
On Fri, Jul 06, 2012 at 05:47:01PM +0200, trophime wrote: I just upload a fix on Debian science git. I did debcheckout --user tille git://git.debian.org/debian-science/packages/scotch.git --git-track '*' but I can not see any fix you have mentioned. Are you sure you pushed your changes?

Bug#681957: ftp.debian.org: Please remove some architectures from package beast-mcmc in contrib

2012-07-18 Thread Andreas Tille
Package: ftp.debian.org Severity: normal As it was discussed on debian-release@l.d.o in the thread ending with http://lists.debian.org/debian-release/2012/07/msg00878.html it seems that some binary packages for arches were autobuilded for a package in contrib even if they should not (because

Bug#682198: qiime: Should depend on python = 2.7.

2012-07-20 Thread Andreas Tille
Hi, would you mind reporting this upstream? Kind regards Andreas. On Fri, Jul 20, 2012 at 05:52:49PM +0900, Charles Plessy wrote: Package: qiime Version: 1.5.0-1 Severity: important Hi all, it looks like /usr/lib/qiime/bin/subsample_fasta.py needs a python library that is not

Bug#682199: Packaging biom-format for Debian (Was: Bug#682199: qiime: Needs function from biom-format.org, which is not packaged.)

2012-07-20 Thread Andreas Tille
Hi Greg, I try to fix a bug report against the Debian packaged Qiime. You might possibly know that the Debian Med project tries to inject any program with relevance for medical care and microbiological research straight into Debian for the comfort of users working in this field. When I started

Bug#682074: texmaker: Restore session does not work after fresh boot

2012-07-20 Thread Andreas Tille
Hi Ted, thanks for your bug report. On Thu, Jul 19, 2012 at 07:17:42AM -0400, Ted To wrote: Package: texmaker Version: 3.3.4-1 Severity: important Could you please give some reasons why you consider this problem important? To my perception it is rather minor or even wishlist. I have

Bug#682199: Packaging biom-format for Debian (Was: Bug#682199: qiime: Needs function from biom-format.org, which is not packaged.)

2012-07-23 Thread Andreas Tille
Hi Greg, thanks for your quick reply. On Sun, Jul 22, 2012 at 07:13:39PM -0700, Greg Caporaso wrote: Thanks for getting in touch about this. The biom-format project is under GPL. I'll also make sure that we drop the OS X files next time we do a release build. Thanks, droping those files

Bug#667161: Language extensions in scripts (Was: Bug#667161: FASTX-Toolkit faisl to build with GCC-4.7)

2012-04-27 Thread Andreas Tille
at 10:21:53PM +0200, Andreas Tille a écrit : When preparing the recent package I noticed that you are providing scripts featuring language extensions (.pl and .sh). Debian Policy[1] says: When scripts are installed into a directory in the system PATH, the script name should

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