Bug#638265: r-base: runs testsuite as root during build

2011-08-18 Thread Dirk Eddelbuettel
On 18 August 2011 at 20:09, Jonathan Nieder wrote: | Dirk Eddelbuettel wrote: | | > Ok, I've applied the patch which went cleanly. Thanks again! | | Thanks for looking it over. Glad to hear it works. :) Haven't built the package yet :) Just applied the patch. Should be fine

Bug#636962: foptions: FTBFS: xvfb-run: error: Xvfb failed to start

2011-08-07 Thread Dirk Eddelbuettel
On 7 August 2011 at 15:30, Kurt Roeckx wrote: | Source: foptions | Version: 2140.79-1 | Severity: serious | | Hi, | | Your package failed to build with the following error: | if test -f /usr/bin/xvfb-run; then \ | xvfb-run \ |

Bug#636962: foptions: FTBFS: xvfb-run: error: Xvfb failed to start

2011-08-07 Thread Dirk Eddelbuettel
On 7 August 2011 at 17:43, Kurt Roeckx wrote: | On Sun, Aug 07, 2011 at 10:23:09AM -0500, Dirk Eddelbuettel wrote: | > | > On 7 August 2011 at 15:30, Kurt Roeckx wrote: | > | Source: foptions | > | Version: 2140.79-1 | > | Severity: serious | [...] | > | xvfb-run: error: Xv

Bug#636962: foptions: FTBFS: xvfb-run: error: Xvfb failed to start

2011-08-07 Thread Dirk Eddelbuettel
On 7 August 2011 at 18:54, Kurt Roeckx wrote: | On Sun, Aug 07, 2011 at 11:10:46AM -0500, Dirk Eddelbuettel wrote: | > | > On 7 August 2011 at 17:43, Kurt Roeckx wrote: | > | On Sun, Aug 07, 2011 at 10:23:09AM -0500, Dirk Eddelbuettel wrote: | > | > | > | > On 7 Augus

Bug#641553: pgapack: The way that the software is compiled fails the shipped test

2011-09-14 Thread Dirk Eddelbuettel
On 14 September 2011 at 12:33, Stefano Bridi wrote: | Package: pgapack | Version: 1.1.1-2 | Severity: important | | Dear Maintainer, | | I was trying to compile the pgapack from source and I always got the embedded | test to fail. After some try and error i found that the parameter "-DWL=32" in

Bug#641640: package ftbfs with ld --as-needed

2011-09-14 Thread Dirk Eddelbuettel
On 14 September 2011 at 22:17, Matthias Klose wrote: | Package: littler | Version: 0.1.3-1 | Severity: normal | Tags: patch | User: ubuntu-de...@lists.ubuntu.com | Usertags: origin-ubuntu oneiric ubuntu-patch | User: debian-...@lists.debian.org | Usertags: ld-as-needed | | see http://wiki.debian

Bug#641553: pgapack: The way that the software is compiled fails the shipped test

2011-09-15 Thread Dirk Eddelbuettel
== "x86_64" ]; then | > CPPFLAGS="-DWL=32 -DFORTRANUNDERSCORE $CPPFLAGS"; | > else | > cho "64bit"; else echo "other";fi | > | > | > On Wed, Sep 14, 2011 at 2:02 PM, Dirk Eddelbuettel wrote: | >> | >> On 14 September 2011 at

Bug#641695: ggobi: Please Build-Depends on libjpeg-dev, not libjpeg62-dev

2011-09-15 Thread Dirk Eddelbuettel
On 15 September 2011 at 11:29, Bill Allombert wrote: | Source: ggobi | Version: 2.1.10-2 | Severity: important | | Hello Dirk, | | We are transitionning from libjpeg62 to libjpeg8. | As mentionned on debian-devel-announce[1], please update ggobi to | Build-Depends on libjpeg-dev instead of libjp

Bug#641748: r-cran-dbi: package description do not respect the Debian general guidelines

2011-09-15 Thread Dirk Eddelbuettel
On 15 September 2011 at 19:59, Davide Prina wrote: | Package: r-cran-dbi | Severity: minor | | Dear Maintainer, | | in DDTSS I see that the upstream home page is present in the package | description but the Debian general guidelines[1] say: | | 6.2.4. Upstream home page | We recommend that you

Bug#633581: Followup on 'Having a directory in /usr/local in R_LIBS_SITE with the R version'

2011-09-19 Thread Dirk Eddelbuettel
I never got your initial bug report Package: r-core-case Version: 2.13.1-1 Severity: wishlist Hello, The Debian packages for R add a "/usr/local/lib/R/site-library" directory into which the local sysadmin can install packages, which is really useful. However, compiled R packag

Bug#716861: RFP: r-cran-formula -- GNU R package for extended model formulas

2013-07-13 Thread Dirk Eddelbuettel
extended model formulas This small, simple and mature package is now a "Depends" of the r-cran-hmisc package we have had in Debian for close a decade and hence needed to maintain hmisc. Dirk -- Dirk Eddelbuettel | e...@debian.org | http://dirk.eddelbuettel.com -- To UNSUBSCRIBE, email to d

Bug#711642: overview at bottom obscures entered letters

2013-06-08 Thread Dirk Eddelbuettel
ests no packages. | | -- no debconf information | | -- | see shy jo | | -- | +-+ | |image| | |image| | |image| | |image| | |image| | |image| | |image| | |image| | |image| | |image| | |image| | |image| | |image| | |image| | |image| | +-+ | xapplication/pgp-signature [Cli

Bug#711808: r-cran-rcpparmadillo should use libarmadillo-dev

2013-06-09 Thread Dirk Eddelbuettel
Architecture: amd64 (x86_64) | Foreign Architectures: i386 | | Kernel: Linux 3.3.0-trunk-amd64 (SMP w/4 CPU cores) | Locale: LANG=en_GB.UTF-8, LC_CTYPE=en_GB.UTF-8 (charmap=UTF-8) | Shell: /bin/sh linked to /bin/dash | | -- | Kumar Appaiah -- Dirk Eddelbuettel | e...@debian.org | http://dirk.eddelb

Bug#717611: libhiredis-dev: pkg-config return extra cruft

2013-07-22 Thread Dirk Eddelbuettel
-gnu -lhiredis edd@max:~$ Both still echo the paths of the chroot build, it should probably just be edd@max:~$ pkg-config hiredis --cflags -D_FILE_OFFSET_BITS=64 edd@max:~$ pkg-config hiredis --libs -lhiredis edd@max:~$ Thanks for maintaining it. Dirk -- Dirk

Bug#714506: r-base: FTBFS on GNU/kFreeBSD with gcc-4.8 -O3

2013-07-23 Thread Dirk Eddelbuettel
quot; #ifneq "$(findstring $(arch), arm)" "" ifneq "$(findstring $(arch), mips mipsel)" "" optimflags = -g0 #optimflags = -O0 -g0 endif ) So with arch:= $(shell dpkg-architecture -qDEB_BUILD_GNU_CPU) buildarch := $(shell dpkg-architecture -qDE

Bug#714506: r-base: FTBFS on GNU/kFreeBSD with gcc-4.8 -O3

2013-07-26 Thread Dirk Eddelbuettel
64-kfreebsd-gnu | DEB_HOST_MULTIARCH=x86_64-kfreebsd-gnu | | Petr -- Dirk Eddelbuettel | e...@debian.org | http://dirk.eddelbuettel.com -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org

Bug#695411: r-base-core: Failure depends on locale settings

2013-08-27 Thread Dirk Eddelbuettel
r statistical co | ii r-doc-info3.0.1-3~squeezecran3.0 GNU R info manuals statistical com | ii r-doc-pdf 3.0.1-3~squeezecran3.0 GNU R pdf manuals for statistical | ii r-mathlib 3.0.1-3~squeezecran3.0 GNU R standalone mathematics libra | | -- no debconf information -

Bug#695411: r-base-core: Failure depends on locale settings

2013-08-28 Thread Dirk Eddelbuettel
an Arm box with R. And I had thought your patch had addressed that? I think I am still applying the patch. Is this report something we should keep here, or file on the R Bugzilla system? Dirk -- Dirk Eddelbuettel | e...@debian.org | http://dirk.eddelbuettel.com -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org

Bug#695411: r-base-core: Failure depends on locale settings

2013-08-28 Thread Dirk Eddelbuettel
On 28 August 2013 at 13:34, Johannes Ranke wrote: | On Wed, Aug 28, 2013 at 06:14:23AM -0500, Dirk Eddelbuettel wrote: | > | > Oh, sorry, I missed that. I don't think I have access to an Arm box with R. | > And I had thought your patch had addressed that? I think I am still ap

Bug#695411: r-base-core: Failure depends on locale settings

2013-08-29 Thread Dirk Eddelbuettel
Core has arm access? I sort-of doubt it... What device are you running this one again? Dirk -- Dirk Eddelbuettel | e...@debian.org | http://dirk.eddelbuettel.com -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org

Bug#723103: IMO it would be nice to buy a drink...

2013-10-15 Thread Dirk Eddelbuettel
| cheers, | Holger | | application/pgp-signature [Press RETURN to save to a file] -- Dirk Eddelbuettel | e...@debian.org | http://dirk.eddelbuettel.com -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org

Bug#719381: fixed in its 1.1.8-4

2013-10-15 Thread Dirk Eddelbuettel
Hi Ivo, On 15 October 2013 at 19:41, Ivo De Decker wrote: | Hi Dirk, | | On Tue, Oct 15, 2013 at 05:33:31PM +, Dirk Eddelbuettel wrote: | >* Somewhat unnecessary rebuild just to squash a bug which was misfiled | > anyway as it affected a Build-Depends and not this p

Bug#617296: Any Progress with RStudio?

2013-09-06 Thread Dirk Eddelbuettel
th the RStudio team, and know them as hard-core C++-ers. There are (were?) newer Qt parts, Boost parts, ... in there but I'd be very surprised to find Java. [ And yes, it remains a very large and complicated package. I have no capacity to help, sorry. ] Dirk -- Dirk Eddelbue

Bug#617296: Any Progress with RStudio?

2013-09-06 Thread Dirk Eddelbuettel
On 6 September 2013 at 05:30, Dirk Eddelbuettel wrote: | | On 6 September 2013 at 16:38, Lifeng Sun wrote: | | Hi, | | | | On 02:58 Fri 09/06/13 Sep , Rogério Brito wrote: | | > If there is indeed interest in packaging R Studio, Lifeng, can you say so? | | > The last public activit

Bug#722652: ITP: r-cran-rcppeigen -- GNU R package for Eigen templated linear algebra

2013-09-12 Thread Dirk Eddelbuettel
Package: wnpp Owner: Dirk Eddelbuettel Severity: wishlist * Package name: r-cran-rcppeigen Version : 0.3.1.2.1-1 Upstream Author : Douglas Bates, Romain Francois and Dirk Eddelbuettel * URL or Web page : http://cran.r-project.org/package=RcppEigen * License : GPL-2

Bug#722651: ITP: r-cran-minqa -- GNU R package for quadratic optimisation without derivatives

2013-09-12 Thread Dirk Eddelbuettel
Package: wnpp Owner: Dirk Eddelbuettel Severity: wishlist * Package name: r-cran-minqa Version : 1.2.1-1 Upstream Author : Douglas Bates, Katharine M. Mullen, John C. Nash, Ravi Varadhan * URL or Web page : http://cran.r-project.org/package=minqa * License : GPL-2

Bug#723103: dieharder: non-free due to $beverage clause?

2013-09-16 Thread Dirk Eddelbuettel
nd act if necessary. | | [1]http://ftp-master.metadata.debian.org/changelogs/main/d/dieharder/unstable_copyright | | | Cheers, | -- | Raphael Geissert - Debian Developer | www.debian.org - get.debian.net -- Dirk Eddelbuettel | e...@debian.org | http://dirk.eddelbuettel.com -- To UNSUBSCRIBE, email to debian-b

Bug#719332: ITP: r-cran-sparsem -- GNU R basic linear algebra for sparse matrices

2013-08-10 Thread Dirk Eddelbuettel
Package: wnpp Owner: Dirk Eddelbuettel Severity: wishlist * Package name: r-cran-sparsem Version : 1.03 Upstream Author : Roger Koenker and Pin Ng * URL or Web page : http://www.econ.uiuc.edu/~roger/research/sparse/sparse.html * License : GPL-2 Description : GNU R

Bug#719381: its: FTBFS: there is no package called 'rpart'

2013-08-11 Thread Dirk Eddelbuettel
| About the archive rebuild: The rebuild was done on EC2 VM instances from | Amazon Web Services, using a clean, minimal and up-to-date chroot. Every | failed build was retried once to eliminate random failures. -- Dirk Eddelbuettel | e...@debian.org | http://dirk.eddelbuettel.com -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org

Bug#723610: python-rpy2: segfault upon import rpy2.robjects

2013-09-17 Thread Dirk Eddelbuettel
6 2.17-92+b1 | ii python2.7.5-5 | ii python-numpy 1:1.7.1-3 | ii r-base-core 3.0.1.20130915-1 | | python-rpy2 recommends no packages. | | Versions of packages python-rpy2 suggests: | pn python-rpy-docs | | -- no debconf information -- Dirk Eddelbuettel | e...@debian.or

Bug#635207: r-base-core: --max-vsize argument creates limit off by a factor of 8

2011-07-23 Thread Dirk Eddelbuettel
Christophe, I saw your post on r-devel. It really belongs there. We add nothing by discussing / hiding this in the Debian BTS. On 23 July 2011 at 21:05, Christophe Rhodes wrote: | Package: r-base-core | Version: 2.13.1-1 | Severity: normal | Tags: patch | | Hi, | | On my system, I need for va

Bug#635832: r-base: `R = matrix(sample(c(-1,1),10000*10000,replace=T),nrow=n)` reliably freezes my system

2011-07-28 Thread Dirk Eddelbuettel
Paul, On 28 July 2011 at 23:22, Paul Menzel wrote: | Package: r-base | Version: 2.13.1-1 | Severity: important | | Dear Debian folks, | | | The following command reliably freezes my system after one or two | seconds and the only way to recover is to cold reset the system. | | > n = 1000

Bug#713312: quantlib: FTBFS: build hangs

2013-06-22 Thread Dirk Eddelbuettel
of zero-spreaded term structure... | > Testing observability of zero-spreaded term structure... | > Testing time series construction... | > Testing time series interval price... | > Testing time series iterators... | > Testing TQR eigenvalue decomposition... | > Test

Bug#650117: littler: user installed packages not found

2011-11-26 Thread Dirk Eddelbuettel
On 26 November 2011 at 18:57, Paul Menzel wrote: | Package: littler | Version: 0.1.5-1 | Severity: normal | | Dear Debian folks, There is a single maintainer for the littler package, and his name is Dirk. | since the package rbenchmark is not packaged in Debian I installed it using `install.p

Bug#650117: littler: user installed packages not found

2011-11-26 Thread Dirk Eddelbuettel
Hi Paul, On 26 November 2011 at 22:10, Paul Menzel wrote: | Dear Dirk, | | | Am Samstag, den 26.11.2011, 12:42 -0600 schrieb Dirk Eddelbuettel: | > On 26 November 2011 at 18:57, Paul Menzel wrote: | > | Package: littler | > | Version: 0.1.5-1 | > | Severity: normal | > | |

Bug#650117: littler: user installed packages not found

2011-11-26 Thread Dirk Eddelbuettel
On 26 November 2011 at 23:16, Paul Menzel wrote: | Dear Dirk, | | | thank you again for your quick response. | | | Am Samstag, den 26.11.2011, 15:35 -0600 schrieb Dirk Eddelbuettel: | | > On 26 November 2011 at 22:10, Paul Menzel wrote: | | > | Am Samstag, den 26.11.2011, 12:42

Bug#650754: polspline: FTBFS on ia64: internal compiler error: in find_used_regs, at sel-sched.c:3273

2011-12-02 Thread Dirk Eddelbuettel
Jacuk, On 2 December 2011 at 16:44, Jakub Wilk wrote: | Source: polspline | Version: 1.1.5-2 | Severity: serious | Justification: fails to build from source | User: debian-i...@lists.debian.org | Usertags: ia64 | | polspline FTBFS on ia64: | | gcc -std=gnu99 -I/usr/share/R/include -fpic -O

Bug#650760: rgtk2: FTBFS on ia64: *** caught segfault *** address 0x1000050, cause 'memory not mapped'

2011-12-02 Thread Dirk Eddelbuettel
On 2 December 2011 at 17:33, Jakub Wilk wrote: | Source: rgtk2 | Version: 2.20.19-1 | Severity: serious | Justification: fails to build from source | User: debian-i...@lists.debian.org | Usertags: ia64 This is a pretty demanding package. I can see from the detailed logs at https://buildd.debi

Bug#650760: rgtk2: FTBFS on ia64: *** caught segfault *** address 0x1000050, cause 'memory not mapped'

2012-01-02 Thread Dirk Eddelbuettel
On Fri, Dec 2, 2011 at 9:28 AM, Dirk Eddelbuettel wrote: | | | On 2 December 2011 at 17:33, Jakub Wilk wrote: | | Source: rgtk2 | | Version: 2.20.19-1 | | Severity: serious | | Justification: fails to build from source | | User: debian-i...@lists.debian.org | | Use

Bug#652137: rmysql: should build-depend on libmysqlclient-dev to pick up latest version of libmysqlclient

2011-12-14 Thread Dirk Eddelbuettel
Source: rmysql | Section: gnu-r | Priority: optional | Maintainer: Dirk Eddelbuettel | -Build-Depends: debhelper (>= 7.0.0), cdbs, r-base-dev (>= 2.13.0), libmysqlclient15-dev, r-cran-dbi (>= 0.2-2) | +Build-Depends: debhelper (>= 7.0.0), cdbs, r-base-dev (>= 2.13.0), libmysqlc

Bug#652456: r-base-dev: CDBS helper /usr/share/R/debian/r-cran.mk should not use simple-patchsys

2011-12-17 Thread Dirk Eddelbuettel
severity 652456 wishlist tags 652456 + wontfix quit Andreas, On 17 December 2011 at 13:49, Andreas Tille wrote: | Package: r-base-dev | Severity: normal | | Hi, | | I tried to build an R package using | | include /usr/share/R/debian/r-cran.mk | | while at the same time applying some patche

Bug#652456: r-base-dev: CDBS helper /usr/share/R/debian/r-cran.mk should not use simple-patchsys

2011-12-17 Thread Dirk Eddelbuettel
PS I suppose you could also submit a new r-cran-quilt.mk script which we could test incrementatlly on new packages. Dirk -- "Outside of a dog, a book is a man's best friend. Inside of a dog, it is too dark to read." -- Groucho Marx -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lis

Bug#652456: r-base-dev: CDBS helper /usr/share/R/debian/r-cran.mk should not use simple-patchsys

2011-12-17 Thread Dirk Eddelbuettel
On 17 December 2011 at 18:23, Andreas Tille wrote: | Hi, | | I used a private copy of r-cran.mk to work around this problem. | Feel free to apply this patch: As I said, I cannot really afford any breakage, nor do I have time for testing. So maybe I should just drop in a file /usr/share/R/

Bug#652456: r-base-dev: CDBS helper /usr/share/R/debian/r-cran.mk should not use simple-patchsys

2011-12-17 Thread Dirk Eddelbuettel
2011 at 11:42:48AM -0600, Dirk Eddelbuettel wrote: | > | > On 17 December 2011 at 18:23, Andreas Tille wrote: | > | Hi, | > | | > | I used a private copy of r-cran.mk to work around this problem. | > | Feel free to apply this patch: | > | > As I said, I cannot really affor

Bug#663445: libquantlib-1.2: fails to upgrade from squeeze - trying to overwrite /usr/lib/libQuantLib.so.0.0.0

2012-03-12 Thread Dirk Eddelbuettel
On 11 March 2012 at 11:53, Andreas Beckmann wrote: | Package: libquantlib-1.2 | Version: 1.2-1 | Severity: serious | User: debian...@lists.debian.org | Usertags: piuparts | | Hi, | | during a test with piuparts I noticed your package fails to upgrade from | 'squeeze'. | It installed fine in 'squ

Bug#663445: libquantlib-1.2: fails to upgrade from squeeze - trying to overwrite /usr/lib/libQuantLib.so.0.0.0

2012-03-14 Thread Dirk Eddelbuettel
Hi Andreas, Please allow me to lean on you one more time here. On 13 March 2012 at 08:56, Andreas Beckmann wrote: | On 2012-03-12 23:17, Dirk Eddelbuettel wrote: | > | Selecting previously unselected package libquantlib-1.2. | > | Unpacking libquantlib-1.2 (from .../libquantlib-1

Bug#663896: src:rmpi: FTBFS (configure: error: "Cannot find mpi.h header file")

2012-03-14 Thread Dirk Eddelbuettel
Julien, Manuel, (and dear maintainers of mpi-default ...), On 14 March 2012 at 21:32, Julien Cristau wrote: | Source: rmpi | Version: 0.5-9-2 | Severity: serious | Justification: fails to build from source (but built successfully in the past) | | See the build logs at | https://buildd.debian.or

Bug#663445: libquantlib-1.2: fails to upgrade from squeeze - trying to overwrite /usr/lib/libQuantLib.so.0.0.0

2012-03-15 Thread Dirk Eddelbuettel
On 15 March 2012 at 12:48, Andreas Beckmann wrote: | Hi Dirk, | | On 2012-03-15 01:06, Dirk Eddelbuettel wrote: | > Please allow me to lean on you one more time here. | ... | > So Replaces + Conflicts + Breaks, a swell as Provides, as in | | You don't need Breaks and Conflicts f

Bug#652655: ftp.debian.org: RM: design -- RoM; abandoned upstream

2011-12-19 Thread Dirk Eddelbuettel
Package: ftp.debian.org Severity: normal The 'Design' package by Prof Frank Harrell (source package: "design" and binary package name "r-cran-design") was renamed upstream to 'rms' to match the title of the corresponding book 'Regression Modeling Strategies'. We now have the 'r-cran-rms' (source

Bug#653570: fregression: FTBFS on ia64: XXX

2011-12-29 Thread Dirk Eddelbuettel
ent R version * debian/control: Set Standards-Version: to current version -- Dirk Eddelbuettel Sat, 22 Oct 2011 17:17:20 -0500 | | ERROR: lazy loading failed for package 'fRegression' | | * removing '/build/buildd-fregression_2100.76-4-ia64-v23ZQJ/fregression-2100.76/debia

Bug#653570: fregression: FTBFS on ia64: XXX

2011-12-29 Thread Dirk Eddelbuettel
On 29 December 2011 at 23:03, Julien Cristau wrote: | On Thu, Dec 29, 2011 at 07:53:56 -0600, Dirk Eddelbuettel wrote: | | > Why? | > | Because: | https://buildd.debian.org/status/logs.php?pkg=polspline&arch=ia64&ver=1.1.5-2 Oh dear not another gcc ICE in Fortran. Dirk -- &qu

Bug#657573: r-mathlib: The following code (using rgamma) hangs

2012-01-27 Thread Dirk Eddelbuettel
Faheem, I was out last night at the local R user group, so sorry it took four mails for a reply. When I play with your code example, as well as the test.c example from the r-mathlib package, I get it to work easily if I just change the seed: edd@max:/tmp$ cat faheem.cpp #define MATHLIB_STANDA

Bug#657573: r-mathlib: The following code (using rgamma) hangs

2012-01-27 Thread Dirk Eddelbuettel
Also: edd@max:/tmp$ cat faheem.cpp #define MATHLIB_STANDALONE #include #include using std::cout; using std::endl; int main(void) { set_seed(0, 0); cout << "one normal " << norm_rand() << endl; } edd@max:/tmp$ g++ -o faheem faheem.cpp -lRmath; ./faheem one normal -inf edd@max:/tmp$

Bug#657919: ITP: r-cran-digest - Create cryptographic hash digests of R objects

2012-01-29 Thread Dirk Eddelbuettel
gt; | > * Package name: r-cran-digest | > Version: 0.5.1 | > Upstream Author: Dirk Eddelbuettel | | Well, Dirk is the main packager of R software inside Debian. If he is | upstream of some software but did not packaged it for Debian, he might | have his reasons to do so. I would like

Bug#665239: fassets: FTBFS: Error : package 'fBasics' could not be loaded

2012-03-22 Thread Dirk Eddelbuettel
On 22 March 2012 at 17:29, Lucas Nussbaum wrote: | Source: fassets | Version: 2100.78-3 | Severity: serious | Tags: wheezy sid | User: debian...@lists.debian.org | Usertags: qa-ftbfs-20120321 qa-ftbfs | Justification: FTBFS on amd64 | | Hi, | | During a rebuild of all packages in sid, your packa

Bug#665235: fasianoptions: FTBFS: Error : package 'fBasics' could not be loaded

2012-03-22 Thread Dirk Eddelbuettel
On 22 March 2012 at 17:28, Lucas Nussbaum wrote: | Source: fasianoptions | Version: 2100.76-3 | Severity: serious | Tags: wheezy sid | User: debian...@lists.debian.org | Usertags: qa-ftbfs-20120321 qa-ftbfs | Justification: FTBFS on amd64 | | Hi, | | During a rebuild of all packages in sid, your

Bug#674464: r-cran-foreign should but doesn't load spss and stada files

2012-05-24 Thread Dirk Eddelbuettel
-foreign depends on: | ii libc6 2.11.3-3 Embedded GNU C Library: Shared lib | ii r-base-core 2.11.1-6 GNU R core of statistical computat | | r-cran-foreign recommends no packages. | | r-cran-foreign suggests no packages. | | -- no debconf information | | -- Dirk Eddel

Bug#674464: r-cran-foreign without read.spss nor read.dta

2012-05-24 Thread Dirk Eddelbuettel
d there is also the r-sig-debian list for Debian/Ubuntu questions. Cheers, Dirk -- Dirk Eddelbuettel | e...@debian.org | http://dirk.eddelbuettel.com -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org

Bug#672749: rquantlib: ftbfs on armel/armhf

2012-05-14 Thread Dirk Eddelbuettel
_LIBS = $(PKG_LIBS) $(SHLIB_LIBADD) $(LIBR)# $(LIBINTL) and upstream also suspected a possible shell expansion issue. The exact same code has been working for years on all other arches. Dirk | | Cheers, | Julien | xapplication/pgp-signature [Click mouse-2 to save to a file] -- Dirk Eddelbuette

Bug#672749: rquantlib: ftbfs on armel/armhf

2012-05-14 Thread Dirk Eddelbuettel
On 15 May 2012 at 00:50, Julien Cristau wrote: | On Mon, May 14, 2012 at 17:27:03 -0500, Dirk Eddelbuettel wrote: | | > | > On 13 May 2012 at 13:59, Julien Cristau wrote: | > | Source: rquantlib | > | Version: 0.3.8-2 | > | Severity: serious | > | Justification: fails to buil

Bug#672749: rquantlib: ftbfs on armel/armhf

2012-05-15 Thread Dirk Eddelbuettel
On 16 May 2012 at 00:18, Julien Cristau wrote: | On Tue, May 15, 2012 at 17:16:29 -0500, Dirk Eddelbuettel wrote: | | > The shell issue may be the best bet, but I see dash and bash. Dash wins, so | > it would have been that. We don't have something smaller than dash which | > wou

Bug#663896: src:rmpi: FTBFS (configure: error: "Cannot find mpi.h header file")

2012-05-15 Thread Dirk Eddelbuettel
MPI_INCLUDE_PATH="${MPI_ROOT}" else echo "Cannot find mpi.h header file" echo "Please use --with-mpi=/path/to/mpi or specify the environment variable MPI_ROOT" Regards, Dirk | | Cheers, | Julien | xapplication/pgp-signature [Click mouse-2 to save to a file] -- Dirk Eddelbuettel | e...@debian.org | http://dirk.eddelbuettel.com

Bug#660305: beancounter: update fails because age cannot be calculated

2012-04-07 Thread Dirk Eddelbuettel
severity 660305 normal thanks Niels, Not sure how this happened but I totally missed the bug report when you filed it. On 18 February 2012 at 02:42, Niels Elgaard Larsen wrote: | Package: beancounter | Version: 0.8.10 | Severity: grave | Tags: upstream patch | Justification: renders package un

Bug#667442: r-base-core: Help docs unavailable with libpcre3 8.30

2012-04-12 Thread Dirk Eddelbuettel
On 4 April 2012 at 20:08, Shyamal Prasad wrote: | | >>>>> "Dirk" == Dirk Eddelbuettel writes: | | Dirk> | It might be worth updating the dependency to libpcre >= 8.30 | | Dirk> That may in fact be thw minimum requirement now. | | I tried building R

Bug#676112: FTBFS bugs with Ruby 1.9 as /usr/bin/ruby

2012-06-13 Thread Dirk Eddelbuettel
On 13 June 2012 at 20:21, Adam D. Barratt wrote: | On Mon, 2012-06-04 at 21:02 -0500, Dirk Eddelbuettel wrote: | > On 4 June 2012 at 22:33, Antonio Terceiro wrote: | > | All these `cannot load such file -- mkmf` bugs are caused by | > | ruby-pkg-tools calling /usr/bin/ruby instead of

Bug#677328: [b-d][abel] rmysql (sid)

2012-06-13 Thread Dirk Eddelbuettel
t;> . | >> | >> | >> -- | >> To unsubscribe, contact listmas...@lists.debian.org | >> | > | | | -- Dirk Eddelbuettel | e...@debian.org | http://dirk.eddelbuettel.com -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org

Bug#677846: r-cran-rcurl is almost ready

2012-06-17 Thread Dirk Eddelbuettel
| Praveen | -- | പ്രവീണ്‍ അരിമ്പ്രത്തൊടിയില്‍ | You have to keep reminding your government that you don't get your | rights from them; you give them permission to rule, only so long as | they follow the rules: laws and constitution. -- Dirk Eddelbuettel | e...@debian.org | http://dirk.eddelbuettel

Bug#676112: FTBFS bugs with Ruby 1.9 as /usr/bin/ruby

2012-06-04 Thread Dirk Eddelbuettel
lying on 'ruby, ruby1.8, ruby1.8-dev' but just ruby1.8, ruby1.8-dev as I (mistakenly ?) concluded the package would not build under ruby 1.9. Dirk -- Dirk Eddelbuettel | e...@debian.org | http://dirk.eddelbuettel.com -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.de

Bug#675529: Removing Boost 1.46

2012-06-05 Thread Dirk Eddelbuettel
/s390 is just too rare. So as distasteful as removing packages is, in this case we should. Dirk | | As for the rest that would mean removing the following source packages | from testing: | boost1.46 bitcoin kraft gpsshogi libosl rdkit yade cinfony pycuda | pyopencl | | Cheers, | Julien -- Dir

Bug#652191: r-noncran-lindsey bug

2012-06-07 Thread Dirk Eddelbuettel
package name indicates that the package is old and a few things changed in R with respect to packages (and particularly their NAMESPACE declarations). It may need a fix -- dunno. I'll be out of town a bit the next few days so not sure when I get a chance to look for closely... Thanks

Bug#646009: r-cran-abind: package cannot be loaded

2011-10-20 Thread Dirk Eddelbuettel
On 20 October 2011 at 09:54, Sebastian Luque wrote: | Package: r-cran-abind | Version: 1.3.0-1 | Severity: normal | | Dear Maintainer, | | Package needs to be rebuilt against latest R, which requires the package | to have a NAMESPACE. Done -- thanks for catching this. Design is actually depre

Bug#646009: r-cran-abind: package cannot be loaded

2011-10-20 Thread Dirk Eddelbuettel
On 20 October 2011 at 09:54, Sebastian Luque wrote: | Package: r-cran-abind | Version: 1.3.0-1 | Severity: normal | | Dear Maintainer, | | Package needs to be rebuilt against latest R, which requires the package | to have a NAMESPACE. Done. Thanks for catching this. Dirk | | -- System Info

Bug#646969: rpy: please add breaks against newer R versions

2011-10-28 Thread Dirk Eddelbuettel
On 28 October 2011 at 21:15, Julian Taylor wrote: | Package: rpy | Version: 1.0.3-18 | Severity: important | | rpy breaks on every version change of R due to it rpy_tools.py | get_R_VERSION using every version digit and this is used to determine | the C extension. My bad. I forgot in this cycle

Bug#646969: rpy: please add breaks against newer R versions

2011-10-28 Thread Dirk Eddelbuettel
(>= 2.6.0) but remove the (<< 2.7.0) so that rpy should not prevent R from entering testing -- Dirk Eddelbuettel Mon, 19 Nov 2007 16:51:59 -0600 What else can we do? Dirk -- "Outside of a dog, a book is a man's best friend. Inside of a dog, it is t

Bug#646969: rpy: please add breaks against newer R versions

2011-10-28 Thread Dirk Eddelbuettel
On 28 October 2011 at 22:50, Julian Taylor wrote: | On 10/28/2011 10:33 PM, Dirk Eddelbuettel wrote: | > | > The "Depends: r-base-core (>= minVersion), r-base-core (<< nextVersion) had | > been tried in the past and rejected a few years ago: | > | > | >rpy

Bug#666414: FTBFS on s390x: Segmentation fault during installation

2012-03-31 Thread Dirk Eddelbuettel
On 30 March 2012 at 17:33, Philipp Kern wrote: | Source: rggobi | Version: 2.1.17-1 | Severity: important | | On Fri, Mar 30, 2012 at 10:56:35AM +, buildd on zappa wrote: | > sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on zappa.debian.org | > | > ╔═══

Bug#666414: FTBFS on s390x: Segmentation fault during installation

2012-04-01 Thread Dirk Eddelbuettel
On 30 March 2012 at 17:33, Philipp Kern wrote: | Source: rggobi | Version: 2.1.17-1 | Severity: important | | On Fri, Mar 30, 2012 at 10:56:35AM +, buildd on zappa wrote: | > sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on zappa.debian.org | > | > ╔═══

Bug#667442: r-base-core: none

2012-04-04 Thread Dirk Eddelbuettel
On 3 April 2012 at 23:08, Shyamal Prasad wrote: | | Package: r-base-core | Version: 2.14.1-1 | Severity: normal | | This morning after an dist-upgrade on my wheezy/sid system(s) I noticed | I could no longer access help data in R | | > ?array | /usr/lib/R/bin/exec/R: symbol lookup error: /usr/l

Bug#799644: quantlib: ABI transition needed for libstdc++ v5

2015-09-21 Thread Dirk Eddelbuettel
On 21 September 2015 at 08:38, Simon McVittie wrote: | Source: quantlib | Version: 1.6.2-1 | Severity: serious | Justification: ABI break since stable for libquantlib0 | Tags: sid stretch | User: debian-...@lists.debian.org | Usertags: libstdc++-cxx11 | | Background[1]: libstdc++6 introduces a ne

Bug#617296: RFP: rstudio -- IDE for GNU R

2015-09-21 Thread Dirk Eddelbuettel
FWIW I am very good and close friends with the RStudio founders and several of their engineers. But most (power R) users I know (myself included) happily use their dailies from http://www.rstudio.org/download/daily/ It would be a lot of work to get (and keep) this packaged as RStudio found over

Bug#799644: quantlib: ABI transition needed for libstdc++ v5

2015-09-21 Thread Dirk Eddelbuettel
On 21 September 2015 at 12:34, Simon McVittie wrote: | On 21/09/15 12:23, Dirk Eddelbuettel wrote: | > So they are all compiled with g++-5.4, I just didn't switch to | > | >libquantlib0v5 | >libquantlib1 (alternate, as I never renamed ...) | > | > So you say

Bug#799644: quantlib: ABI transition needed for libstdc++ v5

2015-09-21 Thread Dirk Eddelbuettel
On 21 September 2015 at 13:06, Simon McVittie wrote: | On 21/09/15 12:51, Dirk Eddelbuettel wrote: | > | Yes, you should rename to libquantlib0v5 and ask the release team to | > | > I'd prefer libquantlib1. Any reason not to? | | Changing the SONAME for this transition would

Bug#799644: quantlib: ABI transition needed for libstdc++ v5

2015-09-21 Thread Dirk Eddelbuettel
On 21 September 2015 at 14:02, Simon McVittie wrote: | On 21/09/15 13:30, Dirk Eddelbuettel wrote: | > | The solution is to change something that is part of the Debian | > | packaging: the package name. | > | > So is the trailing '1'. | | "libquantlib1" would

Bug#799644: quantlib: ABI transition needed for libstdc++ v5

2015-09-21 Thread Dirk Eddelbuettel
A build of libquantlib takes _hours_ with the test. I have time for some iterations but I would like to minimize repitition. I currently have Depends: ${shlibs:Depends}, ${misc:Depends} Breaks: libquantlib-1.1, libquantlib-1.0.0 Replaces: libquantlib-1.2, libquantlib-1.1, libquantlib-1.0.0 Provi

Bug#799644: quantlib: ABI transition needed for libstdc++ v5

2015-09-21 Thread Dirk Eddelbuettel
On 21 September 2015 at 22:59, Simon McVittie wrote: | On 21/09/15 16:49, Dirk Eddelbuettel wrote: | > Is the following good enough? | > | > Depends: ${shlibs:Depends}, ${misc:Depends} | > Breaks: libquantlib-1.1, libquantlib-1.0.0 | > Replaces: libquantlib-1.2, libquantlib-1

Bug#799644: quantlib: ABI transition needed for libstdc++ v5

2015-09-25 Thread Dirk Eddelbuettel
Simon, That is now complete. The two dependent packages are in unstable and should migrate with QuantLib itself to testing in ten days. Thanks for your help and prodding. Dirk -- http://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org

Bug#795680: smtm: FTBFS with perl 5.22 in experimental (MakeMaker changes)

2015-08-16 Thread Dirk Eddelbuettel
Hi Dominic, On 16 August 2015 at 11:21, Dominic Hargreaves wrote: | Source: smtm | Version: 1.6.10 | Severity: important | User: debian-p...@lists.debian.org | Usertags: perl-5.22-transition makemaker-prefix | Tags: sid stretch | | This package FTBFS with perl 5.22.0-2, which removed support for

Bug#795924: ITP: r-cran-matrixmodels -- GNU R package for sparse and dense matrix models

2015-08-17 Thread Dirk Eddelbuettel
Package: wnpp Owner: Dirk Eddelbuettel Severity: wishlist * Package name: r-cran-matrixmodels Version : 0.4-0 Upstream Author : Douglas Bates and Martin Maechler * URL or Web page : https://cran.rstudio.com/web/packages/MatrixModels/index.html * License : GPL (>

Bug#862112: r-base-dev: Generate reproducible output independently of the build path

2017-05-08 Thread Dirk Eddelbuettel
On 8 May 2017 at 19:06, Ximin Luo wrote: | Package: r-base-dev | Version: 3.4.0-1.0~reproducible2 | Severity: wishlist | Tags: upstream patch | User: reproducible-bui...@lists.alioth.debian.org | Usertags: build-path | | Dear Maintainer, | | I've been asked to file this bug report so that others

Bug#862132: src:jags: FTBFS with cppunit 0.14 (cppunit-config removed, errors ignored)

2017-05-08 Thread Dirk Eddelbuettel
On 8 May 2017 at 22:26, Rene Engelhard wrote: | Package: src:jags | Version: 4.2.0-2 | Severity: normal | | Dear Maintainer, | | [ cppunit 0.14 is not in Debian yet, see #861718. Thus normal for now ] | | On a rebuild test using ratt I noticed your package doesn't build with | cppunit 0.14: |

Bug#862132: src:jags: FTBFS with cppunit 0.14 (cppunit-config removed, errors ignored)

2017-05-08 Thread Dirk Eddelbuettel
On 8 May 2017 at 23:19, Rene Engelhard wrote: | Hi, | | On Mon, May 08, 2017 at 04:12:19PM -0500, Dirk Eddelbuettel wrote: | > Ans when you say "you" I presume you are talking to upstream (who happens to | > be a friend of mine, and CC'ed) ? | > | > Are you su

Bug#862132: src:jags: FTBFS with cppunit 0.14 (cppunit-config removed, errors ignored)

2017-05-08 Thread Dirk Eddelbuettel
On 8 May 2017 at 23:41, Rene Engelhard wrote: | Hi, | | On Mon, May 08, 2017 at 04:34:27PM -0500, Dirk Eddelbuettel wrote: | > Not when you talk to upstream, as I do as maintainer. Upstream's code may | > well be built against cppunit-config for years to come. | | Why? | | The po

Bug#862132: src:jags: FTBFS with cppunit 0.14 (cppunit-config removed, errors ignored)

2017-05-08 Thread Dirk Eddelbuettel
On 9 May 2017 at 00:06, Rene Engelhard wrote: | Hi, | | On Mon, May 08, 2017 at 04:51:52PM -0500, Dirk Eddelbuettel wrote: | > On 8 May 2017 at 23:41, Rene Engelhard wrote: | > | Hi, | > | | > | On Mon, May 08, 2017 at 04:34:27PM -0500, Dirk Eddelbuettel wrote: | > | > No

Bug#862132: src:jags: FTBFS with cppunit 0.14 (cppunit-config removed, errors ignored)

2017-05-08 Thread Dirk Eddelbuettel
Sigh. Not my day today. Somehow a) your line was missing the square brackets b) when I add it as in PKG_CHECK_MODULES([CPPUNIT], [cppunit >= 1.12.1]) it doesn't somehow make it into configure so built still fails c) the whole bug report was a little annoying as _we don't even have

Bug#862132: src:jags: FTBFS with cppunit 0.14 (cppunit-config removed, errors ignored)

2017-05-09 Thread Dirk Eddelbuettel
On 9 May 2017 at 07:17, Rene Engelhard wrote: | Hi, | | On Mon, May 08, 2017 at 06:17:19PM -0500, Dirk Eddelbuettel wrote: | > a) your line was missing the square brackets | | Works without. Not for me. | > b) when I add it as in | > | > PKG_CHECK_MODULES([CPPUNI

Bug#862132: src:jags: FTBFS with cppunit 0.14 (cppunit-config removed, errors ignored)

2017-05-09 Thread Dirk Eddelbuettel
On 9 May 2017 at 15:00, Rene Engelhard wrote: | tag 862132 + patch | thanks | | Hi, | | On Tue, May 09, 2017 at 07:39:28AM -0500, Dirk Eddelbuettel wrote: | > | > b) when I add it as in | > | > | > | > PKG_CHECK_MODULES([CPPUNIT], [cppunit >= 1.12.1]) | > |

Bug#862039: r-bioc-gviz: accesses the internet during build

2017-05-09 Thread Dirk Eddelbuettel
On 9 May 2017 at 14:57, Andreas Tille wrote: | Hi Chris, | | On Sun, May 07, 2017 at 06:06:10PM +0100, Chris Lamb wrote: | > | > Whilst r-bioc-gviz builds successfully on unstable/amd64, according to | > Debian Policy 4.9 packages may not attempt network access during | > a build. | > | >00

Bug#862259: libgsl-dev is not Multi-Arch compatible

2017-05-10 Thread Dirk Eddelbuettel
On 10 May 2017 at 13:17, Francois Gouget wrote: | Package: libgsl-dev | Version: 2.3+dfsg-1 | Severity: normal | | Dear Maintainer, | | The amd64 version conflicts with the i386 one which makes it impossible | to install both. As a result one is forced to chose between developing | 32 bit or 64

Bug#862283: r-base: 'R CMD Sweave' exit status is always 1

2017-05-10 Thread Dirk Eddelbuettel
On 10 May 2017 at 17:08, Graham Inggs wrote: | Source: r-base | Version: 3.4.0-1 | Affects: src:r-cran-gsl src:r-cran-shinyjs src:r-cran-v8 | | Hi Maintainer | | With R 3.4.0-1, Sweave's exit status seems to be always 1, even when no | apparent error occurred. | | e.g. | | $ R CMD Sweave vign

Bug#858488: dieharder segfaults when testing the XOR generator

2017-05-13 Thread Dirk Eddelbuettel
On 13 May 2017 at 17:24, Bernhard Übelacker wrote: | Hello, | just tried to reproduce the crash I came to following stack: | | | gdb -q --args dieharder -g 207 -a | | Program received signal SIGSEGV, Segmentation fault. | gsl_rng_get (r=0x0) at ../gsl/gsl_rng.h:161 | 161 return (r->type->

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