Bug#944737: tracker.debian.org: Show pseudo-excuses for experimental as well

2024-07-01 Thread Drew Parsons
Package: tracker.debian.org Followup-For: Bug #944737 Related to this request, it would be helpful if experimental excuses were linked on package tracker pages. qa.debian.org provides such links e.g. https://qa.debian.org/developer.php?login=dpars...@debian.org currently links to experimental exc

Bug#1074625: astroml: fails tests with matplotlib 3.8

2024-07-02 Thread Drew Parsons
Source: astroml Version: 1.0.2-4 Severity: normal astroml is failing debci tests with matplotlib 3.8 from experimental 95s === FAILURES === 95s test_devectorize_axes _ 95s

Bug#1074626: basemap: tests fail with matplotlib 3.8

2024-07-02 Thread Drew Parsons
Source: basemap Version: 1.2.2+dfsg-5 Severity: normal basemap is failing tests with matplotlib 3.8 from experimental. I guess it's likely to be resolved in the more recent releases.

Bug#1074627: gammapy: tests fail with matplotlib 3.8

2024-07-02 Thread Drew Parsons
Source: gammapy Version: 1.1-5 Severity: normal gammapy is failing tests against matplotlib 3.8 from experimental Possibly astropy is at fault rather than gammapy. 237s _ test_plot_at_energy __ 237s 237s self = , unit = Unit(dimensionles

Bug#1074628: poliastro: tests fail with matplotlib 3.8

2024-07-02 Thread Drew Parsons
Source: poliastro Version: 0.17.0-2 Severity: normal poliastro is failing tests with matplotlib 3.8 from experimental e.g. 278s /usr/lib/python3/dist-packages/numpy/ma/core.py:2360: TypeError 278s __ test_axes_labels_and_title __ 278s 278s de

Bug#1074629: pyswarms: fails tests with matplotlib 3.8

2024-07-02 Thread Drew Parsons
Source: pyswarms Version: 1.3.0-6 Severity: normal pyswarms is failing tests with matplotlib 3.8 from experimental: 57s ERROR collecting tests/utils/plotters/test_plotters.py 57s ImportError while importing test module '/tmp/autopkgtest-lxc.ljy3li2v/downtmp/autopkgte

Bug#1074630: xrayutilities: fails tests with matplotlib 3.8

2024-07-02 Thread Drew Parsons
Source: xrayutilities Version: 1.7.4-1 Severity: normal xrayutilities is failing tests with matplotlib 3.8 from experimental 470s _ TestExampleScripts.test_simpack_powdermodel __ 470s 470s self = 470s 470s def test(self): 470s with tempfile.Temporar

Bug#1032488: opendrop: arkode (sundials) error prevents interfacial tension analysis

2023-03-07 Thread Drew Parsons
Package: opendrop Version: 3.3.1-4 Severity: grave Tags: patch upstream Justification: renders package unusable debian patch sundials_nvector_API6.patch enabled opendrop to build against sundials 6. Nevertheless it still fails when attempting to analysis interfacial tension measurements: [ARKOD

Bug#1023566: libharfbuzz0b: undefined symbol: FT_Get_Transform - impossible to install matlab

2023-03-08 Thread Drew Parsons
Package: libharfbuzz0b Version: 6.0.0+dfsg-3 Followup-For: Bug #1023566 Running their binary executable directly: $ ./bin/glnxa64/MATLABWindow ./bin/glnxa64/MATLABWindow: symbol lookup error: /usr/lib/x86_64-linux-gnu/libharfbuzz.so.0: undefined symbol: FT_Get_Transform libharfbuzz.so.0 declar

Bug#1023566: libharfbuzz0b: undefined symbol: FT_Get_Transform - impossible to install matlab

2023-03-08 Thread Drew Parsons
Package: libharfbuzz0b Version: 6.0.0+dfsg-3 Followup-For: Bug #1023566 For the record, it started accepting keyboard input after I left the directly and reentered to try again ;/ I now have a working version of Matlab on my debian system (after removing their libfreetype.so.6) I meant to add, a

Bug#1032577: unblock: opendrop/3.3.1-5

2023-03-09 Thread Drew Parsons
errors by +asserting use of Gtk 3. + * Standards-Version: 4.6.2 + + -- Drew Parsons Thu, 09 Mar 2023 02:24:59 +0100 + opendrop (3.3.1-4) unstable; urgency=medium * debian/patches/sundials_nvector_API6.patch updates sundials diff -Nru opendrop-3.3.1/debian/control opendrop-3.3.1/debian

Bug#1033242: unblock: nwchem/7.0.2-4

2023-03-20 Thread Drew Parsons
-mpich.README.Debian to document the need to use +ARMCI_USE_WIN_ALLOCATE=0 when running nwchem with MPICH 4.0.2 +(binary nwchem.mpich, fixed in mpich 4.0.3). +See upstream Issue#633. + + -- Drew Parsons Sun, 19 Mar 2023 15:01:42 +0100 + nwchem (7.0.2-3) unstable; urgency=medium

Bug#1033244: unblock: armci-mpi/0.3.1~beta-7

2023-03-20 Thread Drew Parsons
ci-mpi (0.3.1~beta-7) unstable; urgency=medium + + * Team upload. + * run build-time tests on only 1 process if only 1 CPU is available. +Closes: #1031064. + * debian/tests: don't run mpich tests on s390x. Closes: #1009772. + + -- Drew Parsons Sun, 19 Mar 2023 14:08:54 +0100 + armci-m

Bug#1021408: golang-github-anacrolix-missinggo: flaky autopkgtest on armhf: FAIL: TestAsCompletedDelayed

2022-10-30 Thread Drew Parsons
Source: golang-github-anacrolix-missinggo Followup-For: Bug #1021408 debci is not currently able to reproduce the error in a barrage of 10 repetitions, on both unstable and testing. It's the nature of flakey tests to not reproduce well, but still I'd expect the failure to show in at least 1 in 10

Bug#1023387: ITP: golang-github-anacrolix-log -- context-style logging for Go

2022-11-03 Thread Drew Parsons
Package: wnpp Severity: wishlist Owner: Drew Parsons X-Debbugs-Cc: debian-de...@lists.debian.org, debian...@lists.debian.org * Package name: golang-github-anacrolix-log Version : 0.13.1 Upstream Author : Matt Joiner * URL : https://github.com/anacrolix/log * License

Bug#1023446: libhdf5-openmpi-dev: h5pcc configured as static build

2022-11-04 Thread Drew Parsons
Package: libhdf5-openmpi-dev Version: 1.10.8+repack-1 Severity: important Control: block 1020054 by -1 h5pcc is showing an unexpected default configuration: $ h5pcc --showconfig gcc -I/usr/include/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf

Bug#1023457: sundials: FTBFS against hypre 2.26 and petsc 3.18

2022-11-04 Thread Drew Parsons
Source: sundials Version: 5.8.0+dfsg-1 Severity: serious Justification: FTBFS Control: affects -1 libhypre-dev libpetsc-real3.18-dev Testing the build of sundials against Hypre 2.6 and PETSc 3.18, both available now in experimental, nvector/parhyp fails with the error message: [ 55%] Linking C ex

Bug#1023457: sundials: FTBFS against hypre 2.26 and petsc 3.18

2022-11-04 Thread Drew Parsons
Source: sundials Followup-For: Bug #1023457 Control: forwarded -1 https://gitlab.com/petsc/petsc/-/issues/1277 PETSc upstream confirms the bug is indeed in sundials, see https://gitlab.com/petsc/petsc/-/issues/1277 "This should be fixed in latest sundials (6.4.0/6.4.1) For 5.8.0 - the fix would

Bug#1023446: libhdf5-openmpi-dev: h5pcc configured as static build

2022-11-06 Thread Drew Parsons
On 2022-11-06 15:22, Gilles Filippini wrote: Hi Drew, ... h5pcc is showing an unexpected default configuration: ... Note how it includes static linking to libhdf5_hl.a and libhdf5.a This is the expected behavior as documented by upstream: -shlib Compile with shared HDF5 libraries [d

Bug#1020561: python3-scipy: Scipy upgrade requires c++ compiler

2022-11-08 Thread Drew Parsons
Source: scipy Followup-For: Bug #1020561 I appreciate the dilemma, but I think we won't be able to avoid it. As you noticed, it's not scipy that needs c++, it's pythran. pythran is recommended by scipy developers upstream. The purpose of pythran is to accelerate scipy execution by runtime genera

Bug#1023742: git-buildpackage: gbp import-orig corrupts image files

2022-11-09 Thread Drew Parsons
Package: git-buildpackage Version: 0.9.29 Severity: important I'm trying to use gbp to update the source for the golang-gocloud package from 0.20.0 to the latest 0.27.0. The salsa url for it is https://salsa.debian.org/go-team/packages/golang-gocloud while upstream is https://github.com/google/go-

Bug#1023742: git-buildpackage: gbp import-orig corrupts image files

2022-11-09 Thread Drew Parsons
Package: git-buildpackage Followup-For: Bug #1023742 It looks like the problem arises from git itself not respecting the image files. When I manually extract the tarball into the upstream branch of a clone of debian's golang-gocloud repo from salsa, and run "git add -A" to add the new files in v0

Bug#1023742: git-buildpackage: gbp import-orig corrupts image files

2022-11-09 Thread Drew Parsons
On 2022-11-09 14:16, Guido Günther wrote: Hi, On Wed, Nov 09, 2022 at 01:47:13PM +0100, Drew Parsons wrote: Package: git-buildpackage Followup-For: Bug #1023742 It looks like the problem arises from git itself not respecting the image files. When I manually extract the tarball into the

Bug#1039904: libopenblas64-pthread-dev: 64-bit lapack-openblas.pc needs -lopenblas64

2023-06-29 Thread Drew Parsons
Package: libopenblas64-pthread-dev Version: 0.3.23+ds-2 Severity: important I'm trying to build hypre 2.29.0. It uses lapack+blas, configuring via pkg-config to get the appropriate -llapack -lblas flags. The debian hypre package builds both 32 bit and 64 bit variants of libhypre.so. On my local

Bug#1028157: cython: please upgrade to 3.0.0 alpha

2023-07-03 Thread Drew Parsons
Source: cython Version: 0.29.32-2 Followup-For: Bug #1028157 Control: affects 1028157 src:scipy The latest version of scipy, 1.11.1, needs Cython>=0.29.35 but also declares Cython<3.0. Can Cython please be updated to the latest 0.29 version before upgrading to 3.0.0 alpha? Might be best to uploa

Bug#1030012: astropy: i386 LevMarLSQFitter fails test

2023-01-30 Thread Drew Parsons
Source: astropy Version: 5.2.1-1 Severity: normal Control: forwarded -1 https://github.com/astropy/astropy/issues/13986 astropy fails test_models_fitting[LevMarLSQFitter-model31] on i386. The problem appears to be triggered by scipy 1.10, and the problem is discussed upstream at https://github.com

Bug#1030220: xrayutilities: missing dependency on python3-h5py breaks armel tests

2023-02-01 Thread Drew Parsons
Source: xrayutilities Version: 1.7.4-1 Severity: serious Justification: debci python3-xrayutilities has an inconsistent Dependency on h5py It declares python3-h5py-serial [alpha, hppa, m68k, sparc64, x32], in other words is not declared for most architectures. But xrayutilities needs h5py in io/h

Bug#1030221: statsmodels: 32 bit arches fail tests using int64

2023-02-01 Thread Drew Parsons
Source: statsmodels Version: 0.13.5+dfsg-4 Severity: serious Justification: debci scipy 1.10 is triggering a problem with tests using int64 on 32 bit arches (armhf, i386, armel) Affected tests are in test_discrete.py: TestDiscretizedGamma.test_basic TestDiscretizedExponential::test_basic TestDisc

Bug#1030220: xrayutilities: missing dependency on python3-h5py breaks armel tests

2023-02-02 Thread Drew Parsons
On 2023-02-01 22:40, Stefano Rivera wrote: Hi Drew (2023.01.31_18:48:32_-0400) xrayutilities does have Build-Depends: python3-h5py. Evidentally dh-python3 isn't able to determine the correct dependency for h5py (likely it gets confused by python3-h5py-serial). Until that's fixed, python3-xrayu

Bug#1030220: xrayutilities: missing dependency on python3-h5py breaks armel tests

2023-02-02 Thread Drew Parsons
Control: reopen 1030220 h5py 3.7.0-4 is uploaded fixing the source of the problem, but xrayutilities will need to be rebuilt to use the new pydist definitions.

Bug#1030518: ITP: python-mp-api -- Materials Project API

2023-02-04 Thread Drew Parsons
Package: wnpp Severity: wishlist Owner: Drew Parsons X-Debbugs-Cc: debian-de...@lists.debian.org, debian-scie...@lists.debian.org, debichem-de...@lists.alioth.debian.org Control: affects -1 src:pymatgen * Package name: python-mp-api Version : 0.27.3 Upstream Contact: Jason Munro

Bug#1030520: ITP: python-emmet -- core models, data pipelines for Materials Project

2023-02-04 Thread Drew Parsons
Package: wnpp Severity: wishlist Owner: Drew Parsons X-Debbugs-Cc: debian-de...@lists.debian.org, debian-scie...@lists.debian.org, debichem-de...@lists.alioth.debian.org * Package name: python-emmet Version : 0.36.4 Upstream Contact: Jason Munro * URL : https

Bug#1030408: duecredit: FTBFS: pkg_resources.extern.packaging.version.InvalidVersion: Invalid version: '0.9.1.debian1'

2023-02-04 Thread Drew Parsons
Package: python3-duecredit Followup-For: Bug #1030408 Control: forwarded -1 https://github.com/duecredit/duecredit/pull/184 This bug is affecting unrelated packages, confirming the Severity:serious. For instance the new mp_api module tries to read its version using pkg_resources.get_distribution,

Bug#1030531: More binNMUs for missing python3-h5py dependencies

2023-02-04 Thread Drew Parsons
On 2023-02-04 18:02, Adrian Bunk wrote: Usertags: binnmu nmu pyfai_0.21.3+dfsg1-2 . ANY . unstable . -m "Rebuild to pick up python3-h5py dependency (see #1030220)" nmu unifrac_1.2-3 . ANY . unstable . -m "Rebuild to pick up python3-h5py dependency (see #1030220)" nmu xraylarch_0.9.58+ds1-5 . ANY

Bug#1030722: python3-pymatgen: WavecarTest.test_get_parchg fails on most arches

2023-02-06 Thread Drew Parsons
Package: python3-pymatgen Version: 2022.11.7+dfsg1-2 Severity: normal WavecarTest.test_get_parchg (io/vasp/tests/test_outputs.py) fails on many arches. Oddly, it passes on armel and armhf (and, less surpirisingly, amd64). The ubiquity of the error suggests it's a specific code problem that can b

Bug#1027244: scikit-learn Re: Are we still trying to do scipy 1.10, given transition freeze?

2023-02-07 Thread Drew Parsons
On 2023-02-07 08:33, Graham Inggs wrote: Hi Drew I think python3-scipy should declare a Breaks on python3-skbio less than the version in unstable (0.5.8-3). This should sort out the autopkgtest regressions of emperor, python-skbio itself, q2-metadata and q2-quality-control, which are all passing

Bug#1030907: [Help] Possible scikit-learn issue (Was: Bug#1030907: umap-learn: FTBFS (failing tests))

2023-02-09 Thread Drew Parsons
On 2023-02-09 15:02, Andreas Tille wrote: Control: tags -1 help Am Thu, Feb 09, 2023 at 12:50:45AM +0100 schrieb Santiago Vila: Package: src:umap-learn Version: 0.4.5+dfsg-3 Severity: serious Tags: ftbfs Dear maintainer: During a rebuild of all packages in bookworm, your package failed to bu

Bug#1030907: [Help] Possible scikit-learn issue (Was: Bug#1030907: umap-learn: FTBFS (failing tests))

2023-02-09 Thread Drew Parsons
On 2023-02-09 20:37, Andreas Tille wrote: Hi again, Am Thu, Feb 09, 2023 at 05:52:13PM +0100 schrieb Andreas Tille: > That said, the np.matrix discrepancy was only just fixed recently, in > December, by > https://github.com/lmcinnes/umap/pull/946 I've updated the packaging, added the PR, fixe

Bug#1030775: xtensor: baseline violation: builds with -march=native

2023-02-09 Thread Drew Parsons
Source: xtensor Followup-For: Bug #1030775 Control: tags -1 wontfix moreinfo I think this is not a bug. xtensor is a header-only library. The builds you're seeing with -march=native are in the tests only, not compiled into the binary package. We could make some effort to prevent the tests runnin

Bug#1016084: transition: petsc

2022-09-19 Thread Drew Parsons
On 2022-09-08 10:19, Sebastian Ramacher wrote: On 2022-09-04 10:02:53 +0200, Drew Parsons wrote: All uploads are done now. Let the binNMUs rip. The rebuilds have been done. The transition is now blocked on #1019287. Bug#1019287 is now fixed, all new builds have now migrated to testing

Bug#1016084: transition: petsc

2022-09-19 Thread Drew Parsons
On 2022-09-19 12:47, Sebastian Ramacher wrote: On 2022-09-19 11:54:36 +0200, Drew Parsons wrote: This transition can be considered done, if we're happy with the state of rheolef reported by https://release.debian.org/transitions/html/auto-mumps.html https://buildd.debian.org/s

Bug#1016084: transition: petsc

2022-09-22 Thread Drew Parsons
On 2022-09-22 10:07, Sebastian Ramacher wrote: On 2022-09-19 13:28:21 +0200, Drew Parsons wrote: On 2022-09-19 12:47, Sebastian Ramacher wrote: > On 2022-09-19 11:54:36 +0200, Drew Parsons wrote: > > This transition can be considered done, if we're happy with the > >

Bug#1016084: transition: petsc

2022-09-22 Thread Drew Parsons
On 2022-09-22 10:07, Sebastian Ramacher wrote: On 2022-09-19 13:28:21 +0200, Drew Parsons wrote: On 2022-09-19 12:47, Sebastian Ramacher wrote: > On 2022-09-19 11:54:36 +0200, Drew Parsons wrote: > > This transition can be considered done, if we're happy with the > >

Bug#1016084: transition: petsc

2022-09-22 Thread Drew Parsons
ll request. https://salsa.debian.org/science-team/getfem/-/merge_requests/3 I can also add the transition to a newer mumps in the same branch if you like. Best regards Konstantinos On Thu, Sep 22, 2022 at 2:12 PM Drew Parsons wrote: On 2022-09-22 10:07, Sebastian Ramacher wrote: On 2022-09-19 13:2

Bug#1020054: h5py: FTBFS: ld: final link failed: bad value

2022-10-12 Thread Drew Parsons
Source: h5py Version: 3.7.0-2 Followup-For: Bug #1020054 Reproducible, e.g. https://tests.reproducible-builds.org/debian/rbuild/unstable/amd64/h5py_3.7.0-2.rbuild.log.gz I suspect the bug is not in h5py but rather in libhdf5-openmpi-dev, possibly in the flags used by h5pcc. The last hdf5 version

Bug#1020054: h5py: FTBFS: ld: final link failed: bad value

2022-10-13 Thread Drew Parsons
Source: h5py Followup-For: Bug #1020054 The problem is partially related to the -L/usr/lib/x86_64-linux-gnu -lhdf5 in the failing compilation line. Since debian provides serial and mpi builds of hdf5, there is no /usr/lib/x86_64-linux-gnu/libhdf5.so (there is libhdf5_serial.so and libhdf5_open

Bug#1026079: ITP: dolfinx-mpc -- Multi-point constraints with FEniCS-X

2022-12-14 Thread Drew Parsons
Package: wnpp Severity: wishlist Owner: Drew Parsons X-Debbugs-Cc: debian-de...@lists.debian.org, Debian Science List * Package name: dolfinx-mpc Version : 0.5.0.post0 Upstream Contact: Jørgen S. Dokken * URL : https://github.com/jorgensd/dolfinx_mpc * License

Bug#1025056: transition: numerical library transition: hypre / petsc / slepc / sundials

2022-12-19 Thread Drew Parsons
The hypre/petsc part of this transition is complete. The sundials part is waiting for dyssol to be patched. Anton is preparing this. Drew On 2022-11-29 23:34, Sebastian Ramacher wrote: Control: tags -1 confirmed Hi Drew On 2022-11-29 12:16:55 +0100, Drew Parsons wrote: Package

Bug#1025056: transition: numerical library transition: hypre / petsc / slepc / sundials

2023-01-02 Thread Drew Parsons
On 2022-12-31 17:59, Anton Gladky wrote: Hi Sebastian, thanks for noting it! #1027402 is fixed now in unstable (that was wrong version in Breaks+Replaces). Am Sa., 31. Dez. 2022 um 14:20 Uhr schrieb Sebastian Ramacher : It's now in unstable. Please also fix #1027402. Looks like deal.ii

Bug#1027710: libruby3.0: drop Provides: ruby-dbm (now provided separately)

2023-01-02 Thread Drew Parsons
Package: libruby3.0 Version: 3.0.4-8 Severity: normal A new ruby-dbm package was recently created to resolve Bug#1027407 (dhelp Depends: ruby-dbm) But libruby3.0 still declares Provides: ruby-dbm (= 1.1.0) and so the new ruby-dbm 1.1.0-2 doesn't actually get installed by a standard upgrade. I gu

Bug#1027757: xsimd: new upstream release

2023-01-02 Thread Drew Parsons
Source: xsimd Version: 8.1.0-7 Severity: normal Upstream has now released xsimd 10.0.0. Pythran developers report that xsimd 10 fixes some problems managing functions for both scalar and vector calculations. Could a package of the new version be made? I recommend uploading to experimental first

Bug#1027864: dh-python: use pyproject by default instead of deprecated setup.py

2023-01-04 Thread Drew Parsons
Package: dh-python Version: 5.20221230 Severity: normal Our pyproject (PEP517) build system now seems to be operating reliably. Using the old default system with setup.py, we now get reminded that it is deprecated. In some cases the old default setup method is even "harmful" in the sense of runn

Bug#1027990: libxtensor-dev: support xsimd 10

2023-01-05 Thread Drew Parsons
Package: libxtensor-dev Version: 0.24.3-1 Severity: normal Control: forwarded -1 https://github.com/xtensor-stack/xtensor/issues/2625 xtensor currently requires xsimd 8. But xsimd 10 is already released. This bug tracks updating xtensor to xsimd 10.

Bug#1028097: mplcursors: remove Build-Depends: libopenblas0 (use libblas-dev instead)

2023-01-06 Thread Drew Parsons
Source: mplcursors Version: 0.5.2-1 Severity: serious Justification: debci mplcursors Build-Depends:libopenblas0 This is bad for several reasons. Firstly, OpenBLAS is not available on all architectures. In particular it's not available on armel (and mipsel), and therefore debci testing on armel

Bug#1028097: mplcursors: remove Build-Depends: libopenblas0 (use libblas-dev instead)

2023-01-06 Thread Drew Parsons
Actually looking more closely at the source, mplcursors doesn't even use BLAS at all. In that case just remove the libopenblas0 dependency altogether (both Build-Depends: and Depends: for the binary package).

Bug#1027864: dh-python: use pyproject by default instead of deprecated setup.py

2023-01-07 Thread Drew Parsons
Package: dh-python Followup-For: Bug #1027864 Mind you, the build module for PEP517 builds seems not to give good control of build and build-temp dirs. For example, the temp dir for building python extensions gets placed in build rather than .pybuild, which is not in the spirit of the pybuild too

Bug#1027230: python-dmsh: autopkgtest fail with numpy/1.24.1

2023-01-09 Thread Drew Parsons
Source: python-dmsh Followup-For: Bug #1027230 I can't reproduce this error. debci tests are passing fine on all architectures.

Bug#1023446: libhdf5-openmpi-dev: h5pcc configured as static build

2022-11-15 Thread Drew Parsons
On 2022-11-06 15:22, Gilles Filippini wrote: h5pcc is showing an unexpected default configuration: $ h5pcc --showconfig gcc -I/usr/include/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5_hl.a /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.

Bug#1024276: ITP: golang-github-googleapis-enterprise-certificate-proxy -- Google Proxies for Enterprise Certificates

2022-11-16 Thread Drew Parsons
Package: wnpp Severity: wishlist Owner: Drew Parsons X-Debbugs-Cc: debian-de...@lists.debian.org, debian...@lists.debian.org * Package name: golang-github-googleapis-enterprise-certificate-proxy Version : 0.1.0 Upstream Author : Andy Zhao * URL : https://github.com

Bug#1024311: ITP: golang-github-google-go-pkcs11 --

2022-11-17 Thread Drew Parsons
Package: wnpp Severity: wishlist Owner: Drew Parsons * Package name: golang-github-google-go-pkcs11 Version : 0.2.0-1 Upstream Author : Google * URL : https://github.com/google/go-pkcs11 * License : Apache-2.0 Programming Lang: Go Description : Go

Bug#1023820: python3-h5py: Dependencies not tight enough

2022-11-18 Thread Drew Parsons
Package: python3-h5py Followup-For: Bug #1023820 This would seem to be a bug in hdf5, not h5py. The shlibs configuration for libhdf5-serial-dev does not seem to be adding the version for libhdf5-103-1 (see python3-h5py-serial), while libhdf5-openmpi-dev does add the version for libhdf5-openmpi-10

Bug#1024424: ITP: golang-github-max-sum-base32768 -- go implementation of base32768, optimized for UTF-16

2022-11-19 Thread Drew Parsons
Package: wnpp Severity: wishlist Owner: Drew Parsons * Package name: golang-github-max-sum-base32768 Version : 0.0~git20191205.7937843-1 Upstream Author : Max Sum * URL : https://github.com/Max-Sum/base32768 * License : Expat Programming Lang: Go

Bug#1024432: ITP: golang-github-artyom-mtab -- Package to read /proc/self/mounts entries

2022-11-19 Thread Drew Parsons
Package: wnpp Severity: wishlist Owner: Drew Parsons * Package name: golang-github-artyom-mtab Version : 1.0.0-1 Upstream Author : Artyom Pervukhin * URL : https://github.com/artyom/mtab * License : Expat Programming Lang: Go Description : Package to

Bug#1024436: ITP: golang-github-buengese-sgzip -- Experiments for a seekable gzip for use in rclone. Based on pgzip

2022-11-19 Thread Drew Parsons
Package: wnpp Severity: wishlist Owner: Drew Parsons * Package name: golang-github-buengese-sgzip Version : 0.0~git20220517.9bca1b6-1 Upstream Author : Sebastian Bünger * URL : https://github.com/buengese/sgzip * License : Expat Programming Lang: Go

Bug#1024442: ITP: hdfs -- A native go client for HDFS

2022-11-19 Thread Drew Parsons
Package: wnpp Severity: wishlist Owner: Drew Parsons * Package name: golang-github-colinmarc-hdfs Version : 2.3.0-1 Upstream Author : Colin Marc * URL : https://github.com/colinmarc/hdfs * License : Expat Programming Lang: Go Description : A native go

Bug#1024445: ITP: gokrb5 -- Pure Go Kerberos library for clients and services

2022-11-19 Thread Drew Parsons
Package: wnpp Severity: wishlist Owner: Drew Parsons * Package name: golang-github-jcmturner-gokrb5 Version : 8.4.3-1 Upstream Author : Jonathan Turner * URL : https://github.com/jcmturner/gokrb5 * License : Apache-2.0 Programming Lang: Go Description

Bug#1024470: ITP: golang-github-hirochachacha-go-smb2 -- SMB2/3 client library written in Go.

2022-11-19 Thread Drew Parsons
Package: wnpp Severity: wishlist Owner: Drew Parsons * Package name: golang-github-hirochachacha-go-smb2 Version : 1.1.0-1 Upstream Author : xHiroshi Ioka * URL : https://github.com/hirochachacha/go-smb2 * License : BSD-2-clause Programming Lang: Go

Bug#1024527: ITP: golang-github-geoffgarside-ber -- Fork of golang pkg `encoding/asn1` to support the Basic Encoding Rules

2022-11-20 Thread Drew Parsons
Package: wnpp Severity: wishlist Owner: Drew Parsons Control: block 1024470 by -1 * Package name: golang-github-geoffgarside-ber Version : 1.1.0-1 Upstream Author : Geoff Garside * URL : https://github.com/geoffgarside/ber * License : BSD-3-clause

Bug#1024551: ITP: fiat -- Fortran IFS and Arpege Toolkit

2022-11-21 Thread Drew Parsons
On 2022-11-21 10:10, Alastair McKinstry wrote: Package: wnpp Severity: wishlist Owner: Alastair McKinstry X-Debbugs-Cc: debian-de...@lists.debian.org, debian-scie...@lists.debian.org * Package name: fiat Version : 1.0.0 Upstream Author : ECMWF * URL : https://gith

Bug#1020561: python3-scipy: Scipy upgrade requires c++ compiler

2022-11-21 Thread Drew Parsons
Source: scipy Followup-For: Bug #1020561 We could consider creating a pythran-free build of the package, providing an alternative via Conflicts/Replaces. As you noted, it would require some effort to get the management of the alternative build in place to run alongside the default build. But it c

Bug#1024556: ITP: golang-github-iguanesolutions-go-systemd -- Golang bindings for systemd

2022-11-21 Thread Drew Parsons
Package: wnpp Severity: wishlist Owner: Drew Parsons * Package name: golang-github-iguanesolutions-go-systemd Version : 5.1.0-1 Upstream Author : Iguane Solutions * URL : https://github.com/iguanesolutions/go-systemd * License : Expat Programming Lang: Go

Bug#1024551: ITP: fiat -- Fortran IFS and Arpege Toolkit

2022-11-21 Thread Drew Parsons
On 2022-11-21 13:10, Alastair McKinstry wrote: On 21/11/2022 11:28, Drew Parsons wrote: On 2022-11-21 10:10, Alastair McKinstry wrote: Package: wnpp Severity: wishlist Owner: Alastair McKinstry X-Debbugs-Cc: debian-de...@lists.debian.org, debian-scie...@lists.debian.org * Package name

Bug#1024569: ITP: golang-github-rclone-ftp -- FTP client package for Go

2022-11-21 Thread Drew Parsons
Package: wnpp Severity: wishlist Owner: Drew Parsons * Package name: golang-github-rclone-ftp Version : 1.0.0-210902h-1 Upstream Author : Julien Laffaye * URL : https://github.com/rclone/ftp * License : ISC Programming Lang: Go Description : FTP

Bug#1024572: ITP: golang-github-dop251-scsu -- A Standard Compression Scheme for Unicode implementation in Go

2022-11-21 Thread Drew Parsons
Package: wnpp Severity: wishlist Owner: Drew Parsons * Package name: golang-github-dop251-scsu Version : 0.0~git20220106.84ac880-1 Upstream Author : Dmitry Panov * URL : https://github.com/dop251/scsu * License : Expat Programming Lang: Go Description

Bug#1023788: getfem: fails to build from source on s390x

2022-11-28 Thread Drew Parsons
severity 1023788 important thanks The problem is hidden in 5.4.2+dfsg1-2 by simply skipping tests on s390x. This will enable getfem 5.4 to migrate to testing, so downgrading severity. But leaving the bug open since the problematic behaviour still needs to be fixed. Drew

Bug#1025056: transition: numerical library transition: hypre / petsc / slepc / sundials

2022-11-29 Thread Drew Parsons
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: transition X-Debbugs-Cc: Anton Gladky We'd like to update the numerical library stack in time for the new stable release. Affected libraries are hypre2.25.0 -> 2.26.0 petsc/slepc3.17

Bug#960339: ITP: adios2 -- Adaptable IO system for simulations

2023-03-27 Thread Drew Parsons
Looks like adios2 has a formidable number of dependencies through libevpath. We should push it through this year. Thanks for the preliminary work. Drew

Bug#1029009: RFP: accessible-pygments -- accessible themes for pygments

2023-01-16 Thread Drew Parsons
Package: wnpp Severity: wishlist X-Debbugs-Cc: debian-pyt...@lists.debian.org, Piotr Ożarowski * Package name: accessible-pygments Version : 0.0.2 Upstream Contact: Tania Allard * URL : https://github.com/Quansight-Labs/accessible-pygments * License : BSD Pr

Bug#686045: cython: Use update-alternatives to manage cython / cython3

2023-01-18 Thread Drew Parsons
Package: cython3 Version: 0.29.32-2 Followup-For: Bug #686045 Control: severity -1 important Control: affects -1 src:scipy This bug is 10 years old! It's still current, affecting the new build system meson. scipy has recently started meson, so this debian problem has triggered the scipy issue ht

Bug#1027244: Are we still trying to do scipy 1.10, given transition freeze?

2023-01-18 Thread Drew Parsons
On 2023-01-18 22:31, Rebecca N. Palmer wrote: This "broken by numpy 1.24" bug looks to me like 17033, not 17630. This has what looks like a trivially-backportable patch, though I haven't actually tried that: https://github.com/scipy/scipy/pull/17035 We can try applying that patch to scipy 1.8

Bug#1017487: ITP: sphinx-design -- sphinx extension for designing beautiful, screen-size responsive web components

2023-01-18 Thread Drew Parsons
Control: affects -1 src:scipy scipy 1.10 has started using sphinx-design for its docs. The scipy doc build is a bit crippled without this package.

Bug#1029285: vtk9: build the IO/GeoJSON module

2023-01-20 Thread Drew Parsons
Package: vtk9 Version: 9.1.0+really9.1.0+dfsg2-4+b3 Severity: normal Control: affects -1 src:vedo vtk9 has a IO/GeoJSON module, but it's not built by default. Is it possible to add it to the build? The reason is that vedo provides geojson support via vtk's python module vtkmodules.vtkIOGeoJSON.

Bug#960339: ITP: adios2 -- Adaptable IO system for simulations

2023-01-24 Thread Drew Parsons
affects 960339 src:fenics-dolfinx thanks VTX support in dolfinx requires adios2

Bug#1029568: xsimd: tests fail on armhf: Cannot access memory, store location is not properly aligned

2023-01-24 Thread Drew Parsons
Source: xsimd Version: 10.0.0-1 Severity: normal Control: forwarded -1 https://github.com/xtensor-stack/xsimd/issues/889 The build of xsimd 10.0.0-1 fails on armhf due to test failure: test_xsimd: ./include/xsimd/types/xsimd_batch.hpp:567: void xsimd::batch::store_aligned(U*) const [with U = unsi

Bug#1029568: xsimd: tests fail on armhf: Cannot access memory, store location is not properly aligned

2023-01-24 Thread Drew Parsons
Source: xsimd Followup-For: Bug #1029568 The source of the armhf test error is actually the -mfpu=neon added explicitly in debian/rules to DEB_CXXFLAGS_MAINT_APPEND on armhf. Remove this flag, then armhf tests pass. As far as other arches go, in general they should pass tests now (running scalar

Bug#1027244: Are we still trying to do scipy 1.10, given transition freeze?

2023-01-25 Thread Drew Parsons
On 2023-01-25 16:25, Andreas Tille wrote: Am Wed, Jan 25, 2023 at 04:23:58PM +0100 schrieb Andreas Tille: I'm just building an according package locally and will hopefully upload soon. ... but Drew Parsons seems to have beaten me. ;-) Thanks also to Drew Andreas. heh yeah, I was

Bug#1029688: emcee: test failure with scipy 1.10

2023-01-26 Thread Drew Parsons
Package: emcee Version: 3.1.3-1 Severity: normal scipy 1.10 is now available in experimental. emcee fails debci tests using it. We are considering uploading scipy 1.10 to unstable in order to included it in the forthcoming stable release. If we proceed with that, then this bug will become Seve

Bug#1029689: emperor: tests fail with scipy 1.10

2023-01-26 Thread Drew Parsons
Package: emperor Version: 1.0.3+ds-7 Severity: normal scipy 1.10 is now available in experimental. emperor fails debci tests using it. We are considering uploading scipy 1.10 to unstable in order to included it in the forthcoming stable release. If we proceed with that, then this bug will become

Bug#1029690: gammapy: tests fail with scipy 1.10

2023-01-26 Thread Drew Parsons
Package: gammapy Version: 1.0-2 Severity: normal scipy 1.10 is now available in experimental. emperor fails debci tests using it. We are considering uploading scipy 1.10 to unstable in order to included it in the forthcoming stable release. If we proceed with that, then this bug will become Seve

Bug#1029691: gudhi: test fail with scipy 1.10

2023-01-26 Thread Drew Parsons
Package: gudhi Version: 3.6.0+dfsg-4 Severity: normal scipy 1.10 is now available in experimental. gudhi fails debci tests using it. We are considering uploading scipy 1.10 to unstable in order to included it in the forthcoming stable release. If we proceed with that, then this bug will become S

Bug#1029692: gwcs: tests fail with scipy 1.10

2023-01-26 Thread Drew Parsons
Package: gwcs Version: 0.18.3-1 Severity: normal scipy 1.10 is now available in experimental. gwcs fails debci tests using it. We are considering uploading scipy 1.10 to unstable in order to included it in the forthcoming stable release. If we proceed with that, then this bug will become Severit

Bug#1029693: python-bumps: tests fail with scipy 1.10

2023-01-26 Thread Drew Parsons
Package: python-bumps Version: 0.9.0-2 Severity: normal scipy 1.10 is now available in experimental. bumps fails debci tests using it. We are considering uploading scipy 1.10 to unstable in order to included it in the forthcoming stable release. If we proceed with that, then this bug will become

Bug#1029694: python-cooler: tests fail with scipy 1.10

2023-01-26 Thread Drew Parsons
Package: python-cooler Version: 0.8.11-7 Severity: normal scipy 1.10 is now available in experimental. python-cooler fails debci tests using it. We are considering uploading scipy 1.10 to unstable in order to included it in the forthcoming stable release. If we proceed with that, then this bug w

Bug#1029696: python-pweave: tests fail with scipy 1.10

2023-01-26 Thread Drew Parsons
Package: python-pweave Version: 0.25-4 Severity: normal scipy 1.10 is now available in experimental. python-pweave fails debci tests using it. We are considering uploading scipy 1.10 to unstable in order to included it in the forthcoming stable release. If we proceed with that, then this bug wil

Bug#1029697: python-skbio: tests fail with scipy 1.10

2023-01-26 Thread Drew Parsons
Package: python-skbio Version: 0.5.8-2 Severity: normal scipy 1.10 is now available in experimental. python-skbio fails debci tests using it. We are considering uploading scipy 1.10 to unstable in order to included it in the forthcoming stable release. If we proceed with that, then this bug will

Bug#1029699: q2-metadata: tests fail with scipy 1.10

2023-01-26 Thread Drew Parsons
Package: q2-metadata Version: 2022.8.0-1 Severity: normal scipy 1.10 is now available in experimental. q2-metadata fails debci tests using it. We are considering uploading scipy 1.10 to unstable in order to included it in the forthcoming stable release. If we proceed with that, then this bug wil

Bug#1029700: q2-quality-control: tests fail with scipy 1.10

2023-01-26 Thread Drew Parsons
Package: q2-quality-control Version: 2022.11.1-2 Severity: normal scipy 1.10 is now available in experimental. q2-quality-control fails debci tests using it. We are considering uploading scipy 1.10 to unstable in order to included it in the forthcoming stable release. If we proceed with that, th

Bug#1029701: scikit-learn: tests fail with scipy 1.10

2023-01-26 Thread Drew Parsons
Package: scikit-learn Version: 1.1.2+dfsg-92 Severity: normal scipy 1.10 is now available in experimental. scikit-learn fails debci tests using it. We are considering uploading scipy 1.10 to unstable in order to included it in the forthcoming stable release. If we proceed with that, then this bu

Bug#1027244: Are we still trying to do scipy 1.10, given transition freeze?

2023-01-26 Thread Drew Parsons
On 2023-01-26 13:35, Graham Inggs wrote: Hi Drew, Andreas ... scipy/1.8.1-22 and numpy/1:1.24.1-2 have just migrated to testing, so please go ahead with uploading scipy 1.10 to unstable when you're ready. ... The experimental pseudo excuses for scipy 1.10.0-1exp6 [1] look good to me, only 12

Bug#1027244: Are we still trying to do scipy 1.10, given transition freeze?

2023-01-26 Thread Drew Parsons
On 2023-01-26 14:32, Graham Inggs wrote: I'll try to wait for scipy's own tests (armel, riscv64) before uploading to unstable. riscv64 is not a release architecture (yet) and the hardware is still a little slow, so it is not enabled for experimental pseudo excuses. True. armel is the main

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