Bug#881900: stretch-pu: package libofx/1:0.9.10-2+deb9u1

Hi Adam, 2017-11-19 23:38 GMT+01:00 Adam D. Barratt <a...@adam-barratt.org.uk>: > > Flagged for acceptance. > Thanks. I just opened a similar bug for libofx in Jessie (#882132). Best, Dylan

Bug#882132: jessie-pu: package libofx/1:0.9.10-1+deb8u1

would like to fix the Jessie version. Please find attached a debdiff. Best, Dylan libofx_0.9.10-1+deb8u1.debdiff Description: Binary data

Bug#881900: stretch-pu: package libofx/1:0.9.10-2+deb9u1

Hi Adam, 2017-11-18 19:31 GMT+01:00 Adam D. Barratt <a...@adam-barratt.org.uk>: > > Please go ahead. > > Adam Thanks, uploaded. Best, Dylan

Bug#881900: stretch-pu: package libofx/1:0.9.10-2+deb9u1

to fix the Stretch and Jessie versions. Please find attached a debdiff for Stretch. Best, Dylan libofx_0.9.10-2+deb9u1.debdiff Description: Binary data

Bug#877442: marked as pending

Hi Moritz, 2017-11-14 21:33 GMT+01:00 Moritz Muehlenhoff <j...@debian.org>: > > There's still the possibility to fix this via a stable point update > [1], so I was wondering whether anything of that sort is planned by > you. > Thanks for the hint. Now, it is ongoing [1]. B

Bug#882132: jessie-pu: package libofx/1:0.9.10-1+deb8u1

Hi Adam, 2017-12-02 13:05 GMT+01:00 Adam D. Barratt <a...@adam-barratt.org.uk>: > > Please go ahead. > Thanks, uploaded. Best, Dylan

Bug#899401: ITP: r-cran-metamix -- GNU R bayesian mixture analysis for metagenomic community profiling

Package: wnpp Severity: wishlist Owner: Debian R Packages Maintainers Package name: r-cran-metamix URL: https://cran.r-project.org/package=metaMix License: GPL-3 Description: GNU R bayesian mixture analysis for metagenomic community profiling Resolves complex

Bug#899400: ITP: bolt-lmm -- Efficient large cohorts genome-wide Bayesian mixed-model association testing

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team Package name: bolt-lmm URL: https://data.broadinstitute.org/alkesgroup/BOLT-LMM/ License: GPL-3+ Description: Efficient large cohorts genome-wide Bayesian mixed-model association

Bug#901871: ITP: photoflare -- Simple but powerful Cross Platform Image Editor

Package: wnpp Severity: wishlist Owner: Dylan Aïssi Package name: photoflare URL: http://photoflare.io/ License: GPL-3+ Description: Simple but powerful Cross Platform Image Editor This is an effort to bring quick, simple but powerful image editing to the masses. PhotoFlare is inspired

Bug#900764: ITP: minimac4 -- Fast Imputation Based on State Space Reduction HMM

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team Package name: minimac4 URL: https://genome.sph.umich.edu/wiki/Minimac4 License: GPL-3 Description: Fast Imputation Based on State Space Reduction HMM Minimac4 is a lower memory and more computationally efficient implementation

Bug#900765: ITP: libstatgen -- processing and analyzing next generation sequencing and genotyping data library

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team Package name: libstatgen URL: https://genome.sph.umich.edu/wiki/C++_Library:_libStatGen License: GPL-3+ Description: processing and analyzing next generation sequencing and genotyping data library libStatGen is a library for

Bug#900759:

tag 900759 pending thanks Fixed in git.

Bug#858947: Processed: retitle to RFP: plink2 -- whole-genome association analysis toolset

ackage plink2 but I am waiting for a more stable version to finish the package. I don't want to propose an alpha version, maybe I will wait at least until a beta version. Best, Dylan

Bug#902405: RFS: photoflare/1.5.4-1

Package: sponsorship-requests Severity: normal Dear mentors, I am looking for a sponsor for my package "photoflare" * Package name: photoflare Version : 1.5.4-1 Upstream Author : Dylan Coakley * URL : http://photoflare.io/ * License : GPL-3+

Bug#884379: libjung-java has changed build system

Hi Andreas, I had a look at it and it seems that we need maven-release-plugin which is not yet packaged [1]. If I find time, I will try to package it. Best, Dylan [1] https://bugs.debian.org/573393

Bug#890451: Generate a skeleton of README.source about rda and rdata files

this. Best, Dylan [1] https://lintian.debian.org/tags/r-data-without-readme-source.html [2] https://lists.debian.org/debian-science/2017/10/msg00070.html

Bug#890969: ITP: r-cran-factominer -- Multivariate Exploratory Data Analysis and Data Mining

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team Package name: r-cran-factominer URL: https://cran.r-project.org/package=FactoMineR License: GPL-2+ Description: Multivariate Exploratory Data Analysis and Data Mining Exploratory data

Bug#890971: ITP: r-cran-leaps -- Regression Subset Selection

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team Package name: r-cran-leaps URL: https://cran.r-project.org/package=leaps License: GPL-2+ Description: Regression Subset Selection Regression subset selection, including exhaustive

Bug#890970: ITP: r-cran-flashclust -- Implementation of optimal hierarchical clustering

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team Package name: r-cran-flashclust URL: https://cran.r-project.org/package=flashClust License: GPL-2+ Description: Implementation of optimal hierarchical clustering Fast implementation

Bug#891080: Generate a skeleton of debian/upstream/metadata using upstream inst/CITATION

, Dylan [1] https://lintian.debian.org/tags/upstream-metadata-file-is-missing.html

Bug#815234: lintian: Detect Rdata files with embedded code

Hi Chris, On Tue, 30 Jan 2018 13:33:28 +0530 Chris Lamb <la...@debian.org> wrote: > > > determine if any code is embedded in the file > > So, how does one do this? :) > Not sure but maybe this [1] could be useful here. Best, Dylan [1] http://search.cpan.org/dist/Statistics-R-IO/

Bug#891326: ITP: jheatchart -- Heat map charting library for Java

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team Package name: jheatchart URL: http://www.javaheatmap.com/ License: LGPL-3+ Description: Heat map charting library for Java The JHeatChart library provides a simple API for generating

Bug#891231: lintian: Improve r-data-without-readme-source by comparing r-data filenames to README.source contents

be useful is: a new version of a package contains a new binary R data file, but if the maintainer does not update the README.source, lintian will no emits any tag whereas this binary is not properly describe. Best, Dylan

Bug#891476: ITP: r-cran-prettyr -- Pretty Descriptive Stats

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team Package name: r-cran-prettyr URL: https://cran.r-project.org/package=prettyR License: GPL-2+ Description: Pretty Descriptive Stats Functions for conventionally formatting descriptive

Bug#904835: ITP: r-cran-ranger -- Fast Implementation of Random Forests

Package: wnpp Severity: wishlist Owner: Debian R Packages Maintainers Package name: r-cran-ranger URL: https://cran.r-project.org/package=ranger License: GPL-3+ Description: Fast Implementation of Random Forests A fast implementation of Random Forests, particularly suited for high dimensional

Bug#905164: ITP: r-cran-reticulate -- R interface to Python modules, classes, and functions

Package: wnpp Severity: wishlist Owner: Debian R Packages Maintainers Package name: r-cran-reticulate URL: https://cran.r-project.org/package=reticulate License: Apache-2.0 Description: R interface to Python modules, classes, and functions Interface to Python modules, classes, and functions.

Bug#904985: lintian: Check for R packages wrongly set Architecture to any instead all

or r-bioc- or r-other-) with this field set to "no" must be marked as all and not any. I fixed a batch of deb R packages but to avoid new one incorrectly marked any, a lintian test would be great. Best, Dylan [1] https://qa.debian.org/bls/bytag/I-no-compiler-commands.html [2] https:

Bug#908159: emacs: Saving clipboard to X clipboard manager takes forever on exit

Package: emacs Version: 1:25.2+1-11 Severity: normal Emacs takes a long time on exit, with the status message "Saving clipboard to X clipboard manager". Eventually there's a message sent to stderr: dpt@tulip:~$ emacs -Q Error saving to X clipboard manager. If the problem persists, set

Bug#903728: ITP: python-colormath -- Abstracts common color math operations

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team Package name: python-colormath URL: https://pypi.org/project/colormath/ License: BSD-3-clause Description: Abstracts common color math operations python-colormath is a simple Python module that spares the user from directly

Bug#903730: ITP: python-spectra -- Easy color scales and color conversion

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team Package name: python-spectra URL: https://pypi.org/project/spectra/ License: Expat Description: Easy color scales and color conversion for Python Spectra is a Python library that makes color math, color scales, and color-space

Bug#903732: ITP: python-lzstring -- LZ-based compression algorithm

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team Package name: python-lzstring URL: https://pypi.org/project/lzstring/ License: Expat Description: LZ-based compression algorithm for Python python-lzstring is a simple Python module that compression data using LZ-based

Bug#892284: ITP: ChromHMM -- Chromatin state discovery and characterization

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team Package name: chromhmm URL: http://compbio.mit.edu/ChromHMM/ License: GPL-3+ Description: Chromatin state discovery and characterization ChromHMM is software for learning and

Bug#879248: r-cran-nmf: detecting number of cores

nk if we really want to fix this issue in our package before than upstream releases a fixed version, we should probably use the same way as upstream. That is to backport these 2 commits [1-2]. Best, Dylan [1] https://github.com/renozao/NMF/commit/063cdcb102 [2] https://github.com/renozao/NMF/commit/6996bce01e

Bug#891808: ITP: r-bioc-impute -- Imputation for microarray data

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team Package name: r-bioc-impute URL: https://bioconductor.org/packages/impute/ License: GPL-2 Description: Imputation for microarray data R package which provide a function to perform

Bug#892481: r-cran-testthat: autopkgtest failure

. Is there a simple way to skip this test except to patch the relevant file and to use the skip function? Best, Dylan

Bug#879248:

on #106 and maybe ask them to release something >=0.23.4. I agree with you, probably useless to backport the patch. I mentioned it, only to keep a trace. Best, Dylan [1] https://github.com/renozao/NMF/commit/b26e3e3189

Bug#879248:

It seems to be fixed in 0.23.4 but not yet on CRAN. https://github.com/renozao/NMF/commit/6996bce01e

Bug#896142: ITP: ChromImpute -- Large-scale systematic epigenome imputation

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team Package name: chromimpute URL: http://www.biolchem.ucla.edu/labs/ernst/ChromImpute/ License: GPL-2 Description: Large-scale systematic epigenome imputation ChromImpute is software for

Bug#882555: r-cran-ddalpha: FTBFS on m68k: no boost::math::Rlog1p

are/R/include/Rmath.h:76:15: note: suggested alternative: 'log1p' > /usr/lib/R/etc/Makeconf:168: recipe for target 'Polynomial.o' failed > make[1]: *** [Polynomial.o] Error 1 > > Could you please take a look? This package was built correctly for m68k on 2018-03-23 [1]. Can we close this bug? Best, Dylan [1] https://buildd.debian.org/status/logs.php?pkg=r-cran-ddalpha=m68k

Bug#887680: r-cran-git2r: FTBFS on m68k: missing value where TRUE/FALSE needed

t; missing value where TRUE/FALSE needed > ERROR: installing package DESCRIPTION failed for package 'git2r' > > Could you please take a look? > This package was built correctly for m68k on 2018-02-27 [1]. Can we close this bug? Best, Dylan [1] https://buildd.debian.org/status/logs.php?pkg=r-cran-git2r=m68k

Bug#887682: r-cran-utf8: FTBFS on m68k: missing value where TRUE/FALSE needed

ectly for m68k on 2018-02-27 [1]. Can we close this bug? Best, Dylan [1] https://buildd.debian.org/status/logs.php?pkg=r-cran-utf8=m68k

Bug#894747: lintian: Re-enable YAML parsing for d/upstream/metadata files

wondering if we can re-enable the d/u/metadata checks in lintian using the safety method? Best, Dylan [1] https://anonscm.debian.org/git/lintian/lintian.git/commit/checks/upstream-metadata.pm?id=6119d49c3b [2] https://bugs.debian.org/861958 [3] https://bugs.debian.org/862373#59

Bug#893827: ITP: bioSyntax -- Syntax highlighting for computational biology

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team Package name: biosyntax URL: https://biosyntax.org/ License: GPL-3 Description: Syntax Highlighting for Computational Biology (gedit) Syntax highlighting for computational biology to

Bug#892038: ITP: r-cran-ggsci -- Scientific Journal and Sci-Fi Themed Color Palettes

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team X-Debbugs-Cc: debia...@lists.debian.org Package name: r-cran-ggsci URL: https://cran.r-project.org/package=ggsci License: GPL-3 Description: Scientific Journal and Sci-Fi Themed Color

Bug#892039: ITP: r-cran-bigmemory -- Manage Massive Matrices with Shared Memory and Memory-Mapped Files

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team X-Debbugs-Cc: debia...@lists.debian.org Package name: r-cran-bigmemory URL: https://cran.r-project.org/package=bigmemory License: LGPL-3 or Apache-2 Description: Manage Massive

Bug#892040: ITP: r-cran-bigmemory.sri -- A shared resource interface for Bigmemory Project packages

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team X-Debbugs-Cc: debia...@lists.debian.org Package name: r-cran-bigmemory.sri URL: https://cran.r-project.org/package=bigmemory.sri License: LGPL-3 or Apache-2 Description: A shared

Bug#660165: Source package names for R libraries (and others)

ource and binary names for R packages could be beneficial. Or rather how a source name beginning by with r-* could be beneficial today (i.e. it will activate some tests). It should probably be better to forget my previous email :-). Best, Dylan

Bug#891231: lintian: Improve r-data-without-readme-source by comparing r-data filenames to README.source contents

) to avoid a manual editing :-). > An example from the R maintainers (especially including a violating case) > would be extremely useful. Let's wait and see what the team will decide before to go further. Best, Dylan

Bug#660165:

Hi, Just my two cents, all Debian R packages without r-*** source package name don't profit of the R autodep8 tests. So, increase the application of this "recommendation" will also increase number of automatic tested R packages. Best, Dylan

Bug#891734: ITP: r-cran-gee -- Generalized Estimation Equation Solver

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team Package name: r-cran-gee URL: https://cran.r-project.org/package=gee License: GPL-2 Description: Generalized Estimation Equation Solver R package which provide a function to solve a

Bug#911809: ITP: r-cran-ini -- Read and Write '.ini' Files

Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: r-cran-ini Version : 0.3.1 Upstream Author : David Valentim Dias * URL : https://cran.r-project.org/package=ini * License : GPL-3 Programming Lang: GNU R Description : Read and Write

Bug#912177: ITP: r-cran-rcmdcheck -- Run 'R CMD check' from 'R' and Capture Results

Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: r-cran-rcmdcheck Version : 1.3.0 Upstream Author : Mango Solutions, Gábor Csárdi, RStudio * URL : https://cran.r-project.org/package=rcmdcheck * License : MIT Programming Lang: GNU R

Bug#912158: ITP: r-cran-remotes -- R Package Installation from Remote Repositories

Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: r-cran-remotes Version : 2.0.1 Upstream Author : Gábor Csárdi, * URL : https://cran.r-project.org/package=remotes * License : GPL-2+ Programming Lang: GNU R Description : R Package

Bug#912138: ITP: r-cran-sessioninfo -- R Session Information

Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: r-cran-sessioninfo Version : 1.1.0 Upstream Author : Gábor Csárdi, R core, Hadley Wickham, Winston Chang, Robert M Flight, Kirill Müller, Jim Hester * URL : https://cran.r-project.org/package

Bug#912534: ITP: r-cran-selectr -- Translate CSS Selectors to XPath Expressions

Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: r-cran-selectr Version : 0.4 Upstream Author : Simon Potter, Simon Sapin, Ian Bicking * URL : https://cran.r-project.org/package=selectr * License : BSD-3-clause Programming Lang: GNU R

Bug#911982: ITP: r-cran-clisymbols -- Unicode Symbols at the R Prompt

Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: r-cran-clisymbols Version : 1.2.0 Upstream Author : Gábor Csárdi, Sindre Sorhus * URL : https://cran.r-project.org/package=clisymbols * License : MIT Programming Lang: GNU R Description

Bug#911984: ITP: r-cran-xopen -- Open System Files, 'URLs', Anything

Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: r-cran-xopen Version : 1.0.0 Upstream Author : Gábor Csárdi * URL : https://cran.r-project.org/package=xopen * License : MIT Programming Lang: GNU R Description : Open System Files

Bug#911989: ITP: r-cran-usethis -- Automate Package and Project Setup

Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: r-cran-usethis Version : 1.4.0 Upstream Author : Hadley Wickham, Jennifer Bryan, RStudio * URL : https://cran.r-project.org/package=usethis * License : GPL-3 Programming Lang: GNU R

Bug#912716: ITP: r-cran-reprex -- Prepare Reproducible Example Code via the Clipboard

Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: r-cran-reprex Version : 0.2.1 Upstream Author : Jennifer Bryan, Jim Hester, David Robinson, Hadley Wickham, RStudio * URL : https://cran.r-project.org/package=reprex * License : MIT

Bug#912728: ITP: r-cran-tidyverse -- Easily Install and Load the 'Tidyverse'

Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: r-cran-tidyverse Version : 1.2.1 Upstream Author : Hadley Wickham, RStudio * URL : https://cran.r-project.org/package=tidyverse * License : GPL-3 Programming Lang: GNU R Description

Bug#912741: ITP: r-cran-biocmanager -- Access the Bioconductor Project Package Repository

Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: r-cran-biocmanager Version : 1.30.3 Upstream Author : Martin Morgan, Marcel Ramos * URL : https://cran.r-project.org/package=BiocManager * License : Artistic-2.0 Programming Lang: GNU R

Bug#912609: ITP: r-cran-rvest -- Easily Harvest (Scrape) Web Pages

Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: r-cran-rvest Version : 0.3.2 Upstream Author : Hadley Wickham, RStudio * URL : https://cran.r-project.org/package=rvest * License : GPL-3 Programming Lang: GNU R Description : Easily

Bug#911914: ITP: r-cran-clipr -- Read and Write from the System Clipboard

Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: r-cran-clipr Version : 0.4.1 Upstream Author : Matthew Lincoln, * URL : https://cran.r-project.org/package=clipr * License : GPL-3 Programming Lang: GNU R Description : Read and Write

Bug#911913: ITP: r-cran-gh -- Minimal client to access the 'GitHub' 'API'

Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: r-cran-gh Version : 1.0.1 Upstream Author : Gábor Csárdi * URL : https://cran.r-project.org/package=gh * License : MIT Programming Lang: GNU R Description : Minimal client to access

Bug#913305: [R-pkg-team] Bug#913305: r-bioc-s4vectors breaks multiple autopkgtests

eases, maybe we can introduce (for next BioC release?) a mechanism similar to the virtual r-api-3.5 package i.e. r-api-bioc-3.8 (provided by r-bioc-biocgenerics). This could avoid to spend other people's time to open bugs like this one or #913527. Best, Dylan

Bug#910351: New version available on CRAN, need to rename this package

Package: r-other-hms-dbmi-spp Version: 1.15.2-1 Severity: wishlist https://cran.r-project.org/package=spp

Bug#909334: ITP: openrazer -- OpenRazer peripheral drivers

Package: wnpp Severity: wishlist Owner: Dylan Aïssi Package name: openrazer URL: https://openrazer.github.io/ License: GPL-2+ Description: OpenRazer peripheral drivers OpenRazer is a collection of GNU/Linux drivers for the Razer devices. Supported devices include keyboards, mice, mouse-mats

Bug#889582: Update libmtp package in Debian (new upstream releases)

Hi Alessio, The last libmtp version packaged in Debian is quite old (2017-04), 3 new versions were released since. Do you intend to update the Debian package before the freeze? If you don't have time, I can help you to update the package. Best, Dylan

Bug#889582: Update libmtp package in Debian (new upstream releases)

Hi Alessio, Le lun. 21 janv. 2019 à 02:23, Alessio Treglia a écrit : > On Fri, 18 Jan 2019 at 16:39, Dylan Aïssi wrote: > > If you don't have time, I can help you to update the package. > > Please go ahead. Thanks :-) Last questions: - Should I do a NMU or co-maint is fine f

Bug#884379: Trying to upgrade libjung-free-java

ase but unfortunately I was not able to do it. Best, Dylan

Bug#884379: Trying to upgrade libjung-free-java

all the java stuff. Best, Dylan

Bug#916333: ITP: dav1d -- fast and small AV1 video stream decoder

Package: wnpp Owner: Debian Multimedia Maintainers Severity: wishlist Package name: dav1d Version: 0.1.0 Upstream Author: VideoLan URL: https://code.videolan.org/videolan/dav1d License: BSD-2-clause Description: fast and small AV1 video stream decoder dav1d is an AOMedia Video 1 (AV1)

Bug#914731:

tps://bugs.debian.org/861748 Best, Dylan

Bug#914731:

Hummm, it worked on my own autopkgtest instance. I will investigate it again.

Bug#915376: ITP: r-bioc-zlibbioc -- (Virtual) zlibbioc Bioconductor package

Package: wnpp Owner: Dylan Aïssi Severity: wishlist Package name: r-bioc-zlibbioc Version: 1.28.0 Upstream Author: Martin Morgan URL: https://bioconductor.org/packages/zlibbioc/ License: Artistic-2.0 Programming Lang: GNU R Description: (Virtual) zlibbioc Bioconductor package zlibbioc provides

Bug#891080:

tag 891080 pending thanks There is now a script for that: https://salsa.debian.org/r-pkg-team/dh-r/blob/master/scripts/convert_citation2metadata

Bug#915717: Some bioconductor packages FTBFS because of missing 'git_branch' field

Package: dh-r Version: 20181123 Severity: important Some bioconductor packages (r-bioc-genomeinfodbdata and r-bioc-go.db) FTBFS because of missing 'git_branch' field in the DESCRIPTION file. This need to be clarified with upstream. But, at the same time, we can relax the requirement of this field

Bug#914445: ITP: fastp -- Ultra-fast all-in-one FASTQ preprocessor

Package: wnpp Owner: Debian Med Packaging Team Severity: wishlist Package name: fastp Version: 0.19.5 Upstream Author : Shifu Chen URL: https://github.com/OpenGene/fastp License: MIT Description: Ultra-fast all-in-one FASTQ preprocessor All-in-one FASTQ preprocessor, fastp provides functions

Bug#913305: [R-pkg-team] Bug#913305: r-bioc-s4vectors breaks multiple autopkgtests

Hi, Le lun. 12 nov. 2018 à 13:25, Andreas Tille a écrit : > > On Mon, Nov 12, 2018 at 11:07:36AM +0100, Dylan Aďssi wrote: > > > > As it's not recommended mixing BioC packages from different BioC > > releases, maybe we can introduce (for next BioC release?) a mechanism &g

Bug#914834: xfce4-settings: Keyboard layout switching keys make default actions not work

Package: xfce4-settings Version: 4.12.4-1 Severity: normal Dear Maintainer, In the Keyboard Settings dialog, if the "Change layout option" is set to (say) "Both Alt together", then the right Alt key stops working in applications. To reproduce: * Set "Change layout option" to "Both Alt

Bug#926259: ITP: optimir -- Integrating genetic variations in miRNA alignment

Package: wnpp Owner: Debian Med Packaging Team Severity: wishlist Package name: optimir Upstream Author : Florian Thibord URL: https://github.com/FlorianThibord/OptimiR License: GPL-3 Description: Integrating genetic variations in miRNA alignment OptimiR is a miRSeq data alignment workflow. It

Bug#921559:

for the moment. Best, Dylan

Bug#925348: Backport r-cran-sys >= 3.1 to Buster

Package: r-cran-sys Severity: wishlist To not forget the Jeroen's request (upstream dev) to backport a new version of r-cran-sys (>= 3.1) in Buster.

Bug#925347: Backport r-cran-openssl >= 1.3.0 to Buster

Package: r-cran-openssl Severity: wishlist To not forget the Jeroen's request (upstream dev) to backport a new version of r-cran-openssl (>= 1.3.0) in Buster. > The main reason I want to upgrade r-cran-openssl is > that I found out that `ssh-keygen` on Buster now defaults to storing > ssh keys

Bug#926506: stretch-pu: package bwa/0.7.15-2+deb9u1

find attached a corresponding debdiff. Best, Dylan bwa_0.7.15-2+deb9u1.debdiff Description: Binary data

Bug#926041: unblock: bwa/0.7.17-3

Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: unblock Please unblock package bwa. [ Dylan Aïssi ] * Add patch from upstream to fix CVE-2019-10269. (Closes: #926014) [ Jelmer Vernooij ] * Trim trailing whitespace. Thanks

Bug#925500: ITP: shapeit4 -- fast and accurate method for estimation of haplotypes

Package: wnpp Owner: Debian Med Packaging Team Severity: wishlist Package name: shapeit4 Upstream Author : Olivier Delaneau URL: https://odelaneau.github.io/shapeit4/ License: Expat Description: fast and accurate method for estimation of haplotypes (phasing) Segmented HAPlotype Estimation and

Bug#923556: stretch-pu: package r-cran-igraph/1.0.1-1+deb9u1

attached a corresponding debdiff. Best, Dylan r-cran-igraph_1.0.1-1+deb9u1.debdiff Description: Binary data

Bug#922736: texlive-pictures: TikZ libraries spath3, knots, and calligraphy produce errors

On Wed, Feb 20, 2019 at 02:37:48PM +0900, Norbert Preining wrote: > On Wed, 20 Feb 2019, Dylan Thurston wrote: > > I opened this bug because I thought this might be a candidate for > > "small targeted fixes", per the soft freeze policy. It would be an > >

Bug#923556: stretch-pu: package r-cran-igraph/1.0.1-1+deb9u1

Le sam. 9 mars 2019 à 15:17, Adam D. Barratt a écrit : > > Please go ahead. Thanks, uploaded! Best, Dylan

Bug#919569: r-cran-rnexml: autopkgtest depends on r-cran-rdflib which is not in testing

n. Upstream will release a new version of r-cran-v8 this week, so yes I will upload this one in unstable asap ;-) https://github.com/jeroen/V8/issues/49#issuecomment-460897217 Best, Dylan

Bug#921709: RM: r-cran-v8 [armel hurd-i386 kfreebsd-amd64 kfreebsd-i386] -- ROM; no longer builds

eebsd-i386 r-cran-v8 | 2.0+dfsg-1| buildd-unstable | source, amd64, arm64, armhf, i386, mips, mipsel, ppc64el, s390x r-cran-v8 | 2.0+dfsg-1| unstable | source, amd64, arm64, armhf, i386, mips, mipsel, ppc64el, s390x version 1.5-3 should be removed from Debian. Thanks a lot. Best, Dylan

Bug#922736: texlive-pictures: TikZ libraries spath3, knots, and calligraphy produce errors

On Wed, Feb 20, 2019 at 01:32:54PM +0900, Norbert Preining wrote: > Hi > > > The spath3 library has recently (2019-02-12) been updated to fix this. > > Thanks, unfortunately I cannot upload new packages to Debian, and Buster > is already in freeze. If it is important for you, please see >

Bug#922736: texlive-pictures: TikZ libraries spath3, knots, and calligraphy produce errors

Package: texlive-pictures Version: 2018.20190131-1 Severity: normal Dear Maintainer, The TikZ library 'spath3' uses illicit variant forms, and stops with a warning. As a result, the 'knots' and 'calligraphy' libraries are also broken, and should not be released as-is. Details here:

Bug#927068: stretch-pu: package vcftools/0.1.14+dfsg-4+deb9u1

Le dim. 14 avr. 2019 à 20:56, Adam D. Barratt a écrit : > > Please go ahead. > Thanks, uploaded! Best, Dylan

Bug#926894: stretch-pu: package igraph/0.7.1-2.1+deb9u1

find attached a corresponding debdiff. Best, Dylan igraph_0.7.1-2.1+deb9u1.debdiff Description: Binary data

Bug#926894: stretch-pu: package igraph/0.7.1-2.1+deb9u1

Le sam. 13 avr. 2019 à 22:52, Adam D. Barratt a écrit : > > Please go ahead. > Thanks, uploaded! Best, Dylan

Bug#926506: stretch-pu: package bwa/0.7.15-2+deb9u1

Le sam. 13 avr. 2019 à 22:54, Adam D. Barratt a écrit : > > Please go ahead. > Thanks, uploaded! Best, Dylan

Bug#927068: stretch-pu: package vcftools/0.1.14+dfsg-4+deb9u1

to fix the Stretch version. Please find attached a corresponding debdiff. Best, Dylan vcftools_0.1.14+dfsg-4+deb9u1.debdiff Description: Binary data

Bug#929008: unblock: cohomcalg/0.32+ds-2

: #928881) * Fix arch-only FTBFS: don't run pdflatex. (Closes: #928881) -- Dylan Aïssi Tue, 14 May 2019 22:29:08 +0200 Thanks. Best, Dylan cohomcalg_0.32+ds-2.debdiff Description: Binary data

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