Bug#1051153: sagemath: crash on startup due to a python error
Package: sagemath Version: 9.5-6 Severity: important Dear Maintainer, I cannot start sage on my computer. Simply running 'sage' in console leads to the following errors: ┌┐ │ SageMath version 9.5, Release Date: 2022-01-30 │ │ Using Python 3.11.5. Type "help()" for help. │ └┘ Error in sys.excepthook: Traceback (most recent call last): File "/usr/lib/python3.11/pathlib.py", line 1251, in is_dir return S_ISDIR(self.stat().st_mode) ^ AttributeError: 'str' object has no attribute 'stat' Original exception was: Traceback (most recent call last): File "/usr/bin/sage-ipython", line 15, in app.initialize() File "/usr/lib/python3/dist-packages/traitlets/config/application.py", line 110, in inner return method(app, *args, **kwargs) File "/usr/lib/python3/dist-packages/IPython/terminal/ipapp.py", line 279, in initialize self.init_shell() File "/usr/lib/python3/dist-packages/sage/repl/interpreter.py", line 789, in init_shell self.shell.extension_manager.load_extension(SAGE_EXTENSION) File "/usr/lib/python3/dist-packages/IPython/core/extensions.py", line 76, in load_extension return self._load_extension(module_str) File "/usr/lib/python3/dist-packages/IPython/core/extensions.py", line 93, in _load_extension if self._call_load_ipython_extension(mod): ^^ File "/usr/lib/python3/dist-packages/IPython/core/extensions.py", line 145, in _call_load_ipython_extension mod.load_ipython_extension(self.shell) File "/usr/lib/python3/dist-packages/sage/repl/__init__.py", line 5, in load_ipython_extension sage.repl.ipython_extension.load_ipython_extension(*args) File "/usr/lib/python3/dist-packages/sage/repl/ipython_extension.py", line 617, in wrapper result = func(*args, **kwargs) ^ File "/usr/lib/python3/dist-packages/sage/repl/ipython_extension.py", line 630, in load_ipython_extension SageCustomizations(shell=ip) File "/usr/lib/python3/dist-packages/sage/repl/ipython_extension.py", line 434, in __init__ import sage.all # until sage's import hell is fixed ^^^ File "/usr/lib/python3/dist-packages/sage/all.py", line 169, in from sage.rings.all import * File "/usr/lib/python3/dist-packages/sage/rings/all.py", line 87, in from .qqbar import (AlgebraicRealField, AA, File "/usr/lib/python3/dist-packages/sage/rings/qqbar.py", line 2810, in QQxy = QQ['x', 'y'] ~~^^ File "sage/structure/parent.pyx", line 1276, in sage.structure.parent.Parent.__getitem__ (build/cythonized/sage/structure/parent.c:11543) File "/usr/lib/python3/dist-packages/sage/categories/rings.py", line 1177, in __getitem__ return PolynomialRing(self, elts) ^^ File "/usr/lib/python3/dist-packages/sage/rings/polynomial/polynomial_ring_constructor.py", line 647, in PolynomialRing return _multi_variate(base_ring, names, **kwds) File "/usr/lib/python3/dist-packages/sage/rings/polynomial/polynomial_ring_constructor.py", line 775, in _multi_variate from sage.rings.polynomial.multi_polynomial_libsingular import MPolynomialRing_libsingular ImportError: libsingular-Singular-4.3.1.so: cannot open shared object file: No such file or directory It used to work and I am not sure what I updated since the last time I tried (a few weeks ago I think). -- System Information: Debian Release: trixie/sid APT prefers unstable-debug APT policy: (500, 'unstable-debug'), (500, 'unstable'), (500, 'testing') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 6.4.0-3-amd64 (SMP w/8 CPU threads; PREEMPT) Kernel taint flags: TAINT_WARN, TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE=fr Shell: /bin/sh linked to /usr/bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled Versions of packages sagemath depends on: ii python3 3.11.4-5+b1 ii python3-sage 9.5-6 Versions of packages sagemath recommends: pn sagemath-doc ii sagemath-jupyter9.5-6 pn sagetex ii texlive-latex-base 2023.20230613-3 Versions of packages sagemath suggests: ii dot2tex 2.11.3-3 pn gap-design ii gap-factint 1.6.3+ds-2 pn gap-grape pn gap-guava ii gap-laguna 3.9.5+ds-2 pn gap-sonata pn gap-toric -- no debconf information
Bug#1018922: kbibtex crashes on startup
I ran into this problem and I was able to fix the problem by compiling kbibtex from upstream. I believe that the problem was fixed by this merge: https://invent.kde.org/office/kbibtex/-/merge_requests/11 which indeed works around a bug/changed behavior of recent versions of Qt. Unfortunately, it seems that this fix did not make it into debian because the project has not made a release since then I believe (I am a bit confused by the tags in the repository). I believe that this could be fixed either by taking the last version of the 0.9 branch of upstream or asking upstream to do a release. Amaury
Bug#995120: linux-image-5.14.0-1-amd64: Raven Ridge cannot boot with secure memory encryption
Package: src:linux
Version: 5.14.6-2
Severity: critical
Justification: breaks the whole system
Dear Maintainer,
* What led up to the situation?
Booting an AMD Raven Bridge computer with this kernel renders the system
unusable because the amdgpu driver
cannot initialize. This happens because the kernel config enables secure memory
encryption (SME) which
is not compatible with RAVEN [1]. In this case, the kernel will contain:
amdgpu: SME is not compatible with RAVEN
* What exactly did you do (or not do) that was effective (or
ineffective)?
Disabling SME is the only option, passing mem_encrypt=off to the kernel solves
the problem
Since disabling SME on all systems is clearly overkill, I think the best option
would be for the GRUB
scripts to probe for Raven Bridge and add "mem_encrypt=off". Based on [1], this
should probably be done
by looking at the PCI devices.
[1] https://lore.kernel.org/linux-iommu/20200907104431.gh16...@8bytes.org/
-- Package-specific info:
** Version:
Linux version 5.14.0-1-amd64 (debian-ker...@lists.debian.org) (gcc-10 (Debian
10.3.0-10) 10.3.0, GNU ld (GNU Binutils for Debian) 2.37) #1 SMP Debian
5.14.6-2 (2021-09-19)
** Command line:
BOOT_IMAGE=/vmlinuz-5.14.0-1-amd64 root=/dev/mapper/debian--vg-root ro quiet
iommu=pt amd_iommu_dump=1 acpi_osi=Linux mem_encrypt=off
** Tainted: OE (12288)
* externally-built ("out-of-tree") module was loaded
* unsigned module was loaded
** Kernel log:
[ 10.586405] hid-multitouch 0018:044E:121F.0001: input,hidraw0: I2C HID v1.00
Mouse [DELL0814:01 044E:121F] on i2c-DELL0814:01
[ 10.594029] EXT4-fs (sda3): mounted filesystem without journal. Opts:
(null). Quota mode: none.
[ 10.594040] ext2 filesystem being mounted at /boot supports timestamps until
2038 (0x7fff)
[ 10.653242] input: HD-Audio Generic HDMI/DP,pcm=3 as
/devices/pci:00/:00:08.1/:04:00.1/sound/card0/input17
[ 10.653341] input: HD-Audio Generic HDMI/DP,pcm=7 as
/devices/pci:00/:00:08.1/:04:00.1/sound/card0/input18
[ 10.653426] input: HD-Audio Generic HDMI/DP,pcm=8 as
/devices/pci:00/:00:08.1/:04:00.1/sound/card0/input19
[ 10.663692] kvm: Nested Virtualization enabled
[ 10.663696] SVM: kvm: Nested Paging enabled
[ 10.663698] SEV supported: 16 ASIDs
[ 10.663699] SEV-ES supported: 4294967295 ASIDs
[ 10.663728] SVM: Virtual VMLOAD VMSAVE supported
[ 10.663729] SVM: Virtual GIF supported
[ 10.679112] dell_laptop: Using i8042 filter function for receiving events
[ 10.685779] ath10k_pci :01:00.0: enabling device ( -> 0002)
[ 10.686432] ath10k_pci :01:00.0: pci irq msi oper_irq_mode 2 irq_mode 0
reset_mode 0
[ 10.692311] MCE: In-kernel MCE decoding enabled.
[ 10.721343] snd_hda_codec_realtek hdaudioC1D0: autoconfig for ALC3246:
line_outs=1 (0x14/0x0/0x0/0x0/0x0) type:speaker
[ 10.721355] snd_hda_codec_realtek hdaudioC1D0:speaker_outs=0
(0x0/0x0/0x0/0x0/0x0)
[ 10.721358] snd_hda_codec_realtek hdaudioC1D0:hp_outs=1
(0x21/0x0/0x0/0x0/0x0)
[ 10.721360] snd_hda_codec_realtek hdaudioC1D0:mono: mono_out=0x0
[ 10.721362] snd_hda_codec_realtek hdaudioC1D0:inputs:
[ 10.721363] snd_hda_codec_realtek hdaudioC1D0: Headset Mic=0x19
[ 10.721365] snd_hda_codec_realtek hdaudioC1D0: Headphone Mic=0x1a
[ 10.721367] snd_hda_codec_realtek hdaudioC1D0: Internal Mic=0x12
[ 10.768989] intel_rapl_common: Found RAPL domain package
[ 10.768994] intel_rapl_common: Found RAPL domain core
[ 10.780103] audit: type=1400 audit(1632665699.799:2): apparmor="STATUS"
operation="profile_load" profile="unconfined" name="firejail-default" pid=740
comm="apparmor_parser"
[ 10.780768] audit: type=1400 audit(1632665699.803:3): apparmor="STATUS"
operation="profile_load" profile="unconfined" name="lsb_release" pid=741
comm="apparmor_parser"
[ 10.781872] audit: type=1400 audit(1632665699.803:4): apparmor="STATUS"
operation="profile_load" profile="unconfined" name="nvidia_modprobe" pid=744
comm="apparmor_parser"
[ 10.781878] audit: type=1400 audit(1632665699.803:5): apparmor="STATUS"
operation="profile_load" profile="unconfined" name="nvidia_modprobe//kmod"
pid=744 comm="apparmor_parser"
[ 10.785010] audit: type=1400 audit(1632665699.807:6): apparmor="STATUS"
operation="profile_load" profile="unconfined" name="mysqld_akonadi" pid=743
comm="apparmor_parser"
[ 10.785848] audit: type=1400 audit(1632665699.807:7): apparmor="STATUS"
operation="profile_load" profile="unconfined" name="postgresql_akonadi" pid=745
comm="apparmor_parser"
[ 10.787391] audit: type=1400 audit(1632665699.807:8): apparmor="STATUS"
operation="profile_load" profile="unconfined" name="/usr/bin/akonadiserver"
pid=747 comm="apparmor_parser"
[ 10.788804] audit: type=1400 audit(1632665699.811:9): apparmor="STATUS"
operation="profile_load" profile="unconfined" name="/usr/bin/man" pid=770
comm="apparmor_parser"
[ 10.788810] audit: type=1400 audit(1632665699.811:10): apparmor="STATUS"
Bug#949446: python3-ipython: Prevents sage fro starting, fails to import _baseclass_reprs
Package: python3-ipython Version: 7.11.1-1 Severity: important Dear Maintainer, Sagemath is not usable on my system because of an import error. I am not sure if the issue lies with sage or with ipython. Here is the backtrace: Traceback (most recent call last): File "/usr/lib/python3.7/runpy.py", line 193, in _run_module_as_main "__main__", mod_spec) File "/usr/lib/python3.7/runpy.py", line 85, in _run_code exec(code, run_globals) File "/usr/lib/python3/dist-packages/sage/repl/ipython_kernel/__main__.py", line 3, in IPKernelApp.launch_instance(kernel_class=SageKernel) File "/usr/lib/python3/dist-packages/traitlets/config/application.py", line 663, in launch_instance app.initialize(argv) File "", line 2, in initialize File "/usr/lib/python3/dist-packages/traitlets/config/application.py", line 87, in catch_config_error return method(app, *args, **kwargs) File "/usr/lib/python3/dist-packages/ipykernel/kernelapp.py", line 542, in initialize self.init_kernel() File "/usr/lib/python3/dist-packages/ipykernel/kernelapp.py", line 447, in init_kernel user_ns=self.user_ns, File "/usr/lib/python3/dist-packages/traitlets/config/configurable.py", line 412, in instance inst = cls(*args, **kwargs) File "/usr/lib/python3/dist-packages/sage/repl/ipython_kernel/kernel.py", line 51, in __init__ super(SageKernel, self).__init__(**kwds) File "/usr/lib/python3/dist-packages/ipykernel/ipkernel.py", line 68, in __init__ kernel = self, File "/usr/lib/python3/dist-packages/traitlets/config/configurable.py", line 412, in instance inst = cls(*args, **kwargs) File "/usr/lib/python3/dist-packages/IPython/core/interactiveshell.py", line 683, in __init__ self.init_display_formatter() File "/usr/lib/python3/dist-packages/sage/repl/interpreter.py", line 231, in init_display_formatter backend.get_display_manager().switch_backend(backend, shell=self) File "/usr/lib/python3/dist-packages/sage/repl/rich_output/display_manager.py", line 322, in switch_backend self._backend.install(**kwds) File "/usr/lib/python3/dist-packages/sage/repl/rich_output/backend_ipython.py", line 59, in install from sage.repl.display.formatter import SageDisplayFormatter File "/usr/lib/python3/dist-packages/sage/repl/display/formatter.py", line 66, in from sage.repl.display.pretty_print import SagePrettyPrinter File "/usr/lib/python3/dist-packages/sage/repl/display/pretty_print.py", line 29, in from sage.repl.display.fancy_repr import * File "/usr/lib/python3/dist-packages/sage/repl/display/fancy_repr.py", line 17, in from IPython.lib.pretty import ( ImportError: cannot import name '_baseclass_reprs' from 'IPython.lib.pretty' (/usr/lib/python3/dist-packages/IPython/lib/pretty.py) -- System Information: Debian Release: bullseye/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 5.4.2-amdmp2 (SMP w/8 CPU cores) Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE=fr (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled Versions of packages python3-ipython depends on: ii python3 3.7.5-3 ii python3-backcall0.1.0-2 ii python3-decorator 4.3.0-1.1 ii python3-jedi0.15.2-1 ii python3-pexpect 4.6.0-1 ii python3-pickleshare 0.7.5-1 ii python3-pkg-resources 44.0.0-1 ii python3-prompt-toolkit 2.0.10-2 ii python3-pygments2.3.1+dfsg-1 ii python3-traitlets 4.3.3-2 python3-ipython recommends no packages. python3-ipython suggests no packages. -- no debconf information
Bug#949287: sagemath-common: Fail to start because of missing unicode_to_str from IPython.utils.py3compat
Package: sagemath-common Version: 8.9-3 Severity: important Dear Maintainer, Sagemath is unusable (both in command line or through jupyter) because of an import error. Specifically, trying to run sage or load a notebook throws the following backtrace: Traceback (most recent call last): File "/usr/lib/python3.7/runpy.py", line 193, in _run_module_as_main "__main__", mod_spec) File "/usr/lib/python3.7/runpy.py", line 85, in _run_code exec(code, run_globals) File "/usr/lib/python3/dist-packages/sage/repl/ipython_kernel/__main__.py", line 3, in IPKernelApp.launch_instance(kernel_class=SageKernel) File "/usr/lib/python3/dist-packages/traitlets/config/application.py", line 663, in launch_instance app.initialize(argv) File "", line 2, in initialize File "/usr/lib/python3/dist-packages/traitlets/config/application.py", line 87, in catch_config_error return method(app, *args, **kwargs) File "/usr/lib/python3/dist-packages/ipykernel/kernelapp.py", line 542, in initialize self.init_kernel() File "/usr/lib/python3/dist-packages/ipykernel/kernelapp.py", line 447, in init_kernel user_ns=self.user_ns, File "/usr/lib/python3/dist-packages/traitlets/config/configurable.py", line 412, in instance inst = cls(*args, **kwargs) File "/usr/lib/python3/dist-packages/sage/repl/ipython_kernel/kernel.py", line 51, in __init__ super(SageKernel, self).__init__(**kwds) File "/usr/lib/python3/dist-packages/ipykernel/ipkernel.py", line 68, in __init__ kernel = self, File "/usr/lib/python3/dist-packages/traitlets/config/configurable.py", line 412, in instance inst = cls(*args, **kwargs) File "/usr/lib/python3/dist-packages/IPython/core/interactiveshell.py", line 683, in __init__ self.init_display_formatter() File "/usr/lib/python3/dist-packages/sage/repl/interpreter.py", line 231, in init_display_formatter backend.get_display_manager().switch_backend(backend, shell=self) File "/usr/lib/python3/dist-packages/sage/repl/rich_output/display_manager.py", line 322, in switch_backend self._backend.install(**kwds) File "/usr/lib/python3/dist-packages/sage/repl/rich_output/backend_ipython.py", line 59, in install from sage.repl.display.formatter import SageDisplayFormatter File "/usr/lib/python3/dist-packages/sage/repl/display/formatter.py", line 64, in from IPython.utils.py3compat import unicode_to_str ImportError: cannot import name 'unicode_to_str' from 'IPython.utils.py3compat' (/usr/lib/python3/dist-packages/IPython/utils/py3compat.py) -- System Information: Debian Release: bullseye/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 5.4.2-amdmp2 (SMP w/8 CPU cores) Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE=fr (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled Versions of packages sagemath-common depends on: ii python3 3.7.5-3 sagemath-common recommends no packages. sagemath-common suggests no packages. -- no debconf information
Bug#943921: linux-image-5.3.0-1-amd64: Touchpad driver for recent AMD laptops not included
Package: src:linux Version: 5.3.7-1 Severity: normal Dear Maintainer, The linux kernel currently included in Debian/unstable does not include a driver for the recent touchpads used on AMD (Ryzen) laptops, for instance the Latitude 5495. A driver for this was added in Linux 5.3 but is not enabled in the config file in Debian yet. Please consider including the "i2c_amd_mp2" driver (config CONFIG_I2C_AMD_MP2), otherwise many advanced features of the touchpad are unavailable. I have verified that including this driver (by setting CONFIG_I2C_AMD_MP2=m) works on my laptop. -- Package-specific info: ** Kernel log: boot messages should be attached ** Model information sys_vendor: Dell Inc. product_name: Latitude 5495 product_version: chassis_vendor: Dell Inc. chassis_version: bios_vendor: Dell Inc. bios_version: 1.2.14 board_vendor: Dell Inc. board_name: 0G9F45 board_version: A00 ** PCI devices: 00:00.0 Host bridge [0600]: Advanced Micro Devices, Inc. [AMD] Raven/Raven2 Root Complex [1022:15d0] Subsystem: Dell Raven/Raven2 Root Complex [1028:0814] Control: I/O- Mem- BusMaster- SpecCycle- MemWINV- VGASnoop- ParErr- Stepping- SERR- FastB2B- DisINTx- Status: Cap- 66MHz- UDF- FastB2B- ParErr- DEVSEL=fast >TAbort- SERR- TAbort- SERR- 00:01.0 Host bridge [0600]: Advanced Micro Devices, Inc. [AMD] Family 17h (Models 00h-1fh) PCIe Dummy Host Bridge [1022:1452] Control: I/O- Mem- BusMaster- SpecCycle- MemWINV- VGASnoop- ParErr- Stepping- SERR- FastB2B- DisINTx- Status: Cap- 66MHz- UDF- FastB2B- ParErr- DEVSEL=fast >TAbort- SERR- TAbort- SERR- TAbort- Reset- FastB2B- PriDiscTmr- SecDiscTmr- DiscTmrStat- DiscTmrSERREn- Capabilities: Kernel driver in use: pcieport 00:01.3 PCI bridge [0604]: Advanced Micro Devices, Inc. [AMD] Raven/Raven2 PCIe GPP Bridge [6:0] [1022:15d3] (prog-if 00 [Normal decode]) Control: I/O+ Mem+ BusMaster+ SpecCycle- MemWINV- VGASnoop- ParErr- Stepping- SERR- FastB2B- DisINTx+ Status: Cap+ 66MHz- UDF- FastB2B- ParErr- DEVSEL=fast >TAbort- SERR- TAbort- Reset- FastB2B- PriDiscTmr- SecDiscTmr- DiscTmrStat- DiscTmrSERREn- Capabilities: Kernel driver in use: pcieport 00:01.4 PCI bridge [0604]: Advanced Micro Devices, Inc. [AMD] Raven/Raven2 PCIe GPP Bridge [6:0] [1022:15d3] (prog-if 00 [Normal decode]) Control: I/O+ Mem+ BusMaster+ SpecCycle- MemWINV- VGASnoop- ParErr- Stepping- SERR- FastB2B- DisINTx+ Status: Cap+ 66MHz- UDF- FastB2B- ParErr- DEVSEL=fast >TAbort- SERR- TAbort- Reset- FastB2B- PriDiscTmr- SecDiscTmr- DiscTmrStat- DiscTmrSERREn- Capabilities: Kernel driver in use: pcieport 00:08.0 Host bridge [0600]: Advanced Micro Devices, Inc. [AMD] Family 17h (Models 00h-1fh) PCIe Dummy Host Bridge [1022:1452] Control: I/O- Mem- BusMaster- SpecCycle- MemWINV- VGASnoop- ParErr- Stepping- SERR- FastB2B- DisINTx- Status: Cap- 66MHz- UDF- FastB2B- ParErr- DEVSEL=fast >TAbort- SERR- TAbort- SERR- TAbort- Reset- FastB2B- PriDiscTmr- SecDiscTmr- DiscTmrStat- DiscTmrSERREn- Capabilities: Kernel driver in use: pcieport 00:08.2 PCI bridge [0604]: Advanced Micro Devices, Inc. [AMD] Raven/Raven2 Internal PCIe GPP Bridge 0 to Bus B [1022:15dc] (prog-if 00 [Normal decode]) Control: I/O+ Mem+ BusMaster+ SpecCycle- MemWINV- VGASnoop- ParErr- Stepping- SERR- FastB2B- DisINTx+ Status: Cap+ 66MHz- UDF- FastB2B- ParErr- DEVSEL=fast >TAbort- SERR- TAbort- Reset- FastB2B- PriDiscTmr- SecDiscTmr- DiscTmrStat- DiscTmrSERREn- Capabilities: Kernel driver in use: pcieport 00:14.0 SMBus [0c05]: Advanced Micro Devices, Inc. [AMD] FCH SMBus Controller [1022:790b] (rev 61) Subsystem: Dell FCH SMBus Controller [1028:0814] Control: I/O- Mem- BusMaster- SpecCycle- MemWINV- VGASnoop- ParErr- Stepping- SERR- FastB2B- DisINTx+ Status: Cap- 66MHz+ UDF- FastB2B- ParErr- DEVSEL=medium >TAbort- SERR- TAbort- SERR- TAbort- SERR- TAbort- SERR- TAbort- SERR- TAbort- SERR- TAbort- SERR- TAbort- SERR- TAbort- SERR- TAbort- SERR- TAbort- SERR- Kernel driver in use: ath10k_pci Kernel modules: ath10k_pci 02:00.0 Ethernet controller [0200]: Broadcom Inc. and subsidiaries NetXtreme BCM5762 Gigabit Ethernet PCIe [14e4:1687] (rev 10) Subsystem: Dell NetXtreme BCM5762 Gigabit Ethernet PCIe [1028:0814] Control: I/O- Mem+ BusMaster+ SpecCycle- MemWINV- VGASnoop- ParErr- Stepping- SERR- FastB2B- DisINTx+ Status: Cap+ 66MHz- UDF- FastB2B- ParErr- DEVSEL=fast >TAbort- SERR- Kernel driver in use: tg3 Kernel modules: tg3 03:00.0 Unassigned class [ff00]: Realtek Semiconductor Co., Ltd. RTS525A PCI Express Card Reader [10ec:525a] (rev 01) Subsystem: Realtek Semiconductor Co., Ltd. RTS525A PCI Express Card Reader [10ec:525a] Control: I/O- Mem+ BusMaster+ SpecCycle-
Bug#932367: sagemath: Sage does not start because of a missing symbol in GAP wrapper
Package: sagemath Version: 8.6-6 Severity: important Dear Maintainer, running sagemath (either directly with 'sage' or running a notebook with jupyter) does not work because the kernel crashes. The final error reported by Python is ImportError: /usr/lib/python2.7/dist-packages/sage/libs/gap/element.x86_64-linux-gnu.so: undefined symbol: _GAP_SetEnterStackCount This renders sage unusable because the kernel will not start. Let me know how if I can help by providing more information. I copy the full backtrace below: Traceback (most recent call last): File "/usr/lib/python2.7/runpy.py", line 174, in _run_module_as_main "__main__", fname, loader, pkg_name) File "/usr/lib/python2.7/runpy.py", line 72, in _run_code exec code in run_globals File "/usr/lib/python2.7/dist-packages/sage/repl/ipython_kernel/__main__.py", line 3, in IPKernelApp.launch_instance(kernel_class=SageKernel) File "/usr/lib/python2.7/dist-packages/traitlets/config/application.py", line 657, in launch_instance app.initialize(argv) File "", line 2, in initialize File "/usr/lib/python2.7/dist-packages/traitlets/config/application.py", line 87, in catch_config_error return method(app, *args, **kwargs) File "/usr/lib/python2.7/dist-packages/ipykernel/kernelapp.py", line 476, in initialize self.init_kernel() File "/usr/lib/python2.7/dist-packages/ipykernel/kernelapp.py", line 387, in init_kernel user_ns=self.user_ns, File "/usr/lib/python2.7/dist-packages/traitlets/config/configurable.py", line 412, in instance inst = cls(*args, **kwargs) File "/usr/lib/python2.7/dist-packages/sage/repl/ipython_kernel/kernel.py", line 52, in __init__ SageJupyterCustomizations(self.shell) File "/usr/lib/python2.7/dist-packages/sage/repl/ipython_extension.py", line 433, in __init__ import sage.all # until sage's import hell is fixed File "/usr/lib/python2.7/dist-packages/sage/all.py", line 102, in from sage.modular.allimport * File "/usr/lib/python2.7/dist-packages/sage/modular/all.py", line 4, in from .quatalg.all import * File "/usr/lib/python2.7/dist-packages/sage/modular/quatalg/__init__.py", line 4, in from . import all File "/usr/lib/python2.7/dist-packages/sage/modular/quatalg/all.py", line 3, in from .brandt import BrandtModule File "/usr/lib/python2.7/dist-packages/sage/modular/quatalg/brandt.py", line 206, in from sage.modular.hecke.all import (AmbientHeckeModule, HeckeSubmodule, HeckeModuleElement) File "/usr/lib/python2.7/dist-packages/sage/modular/hecke/all.py", line 20, in from .ambient_module import AmbientHeckeModule, is_AmbientHeckeModule File "/usr/lib/python2.7/dist-packages/sage/modular/hecke/ambient_module.py", line 38, in from sage.modular.arithgroup.all import Gamma0 # for Sturm bound File "/usr/lib/python2.7/dist-packages/sage/modular/arithgroup/__init__.py", line 4, in from . import all File "/usr/lib/python2.7/dist-packages/sage/modular/arithgroup/all.py", line 6, in from .congroup_generic import is_CongruenceSubgroup, CongruenceSubgroup_constructor as CongruenceSubgroup File "/usr/lib/python2.7/dist-packages/sage/modular/arithgroup/congroup_generic.py", line 28, in from sage.groups.matrix_gps.all import MatrixGroup File "/usr/lib/python2.7/dist-packages/sage/groups/matrix_gps/all.py", line 13, in import sage.groups.matrix_gps.pickling_overrides File "/usr/lib/python2.7/dist-packages/sage/groups/matrix_gps/pickling_overrides.py", line 7, in from sage.groups.matrix_gps.finitely_generated import FinitelyGeneratedMatrixGroup_gap File "/usr/lib/python2.7/dist-packages/sage/groups/matrix_gps/finitely_generated.py", line 81, in from sage.groups.matrix_gps.matrix_group import ( File "/usr/lib/python2.7/dist-packages/sage/groups/matrix_gps/matrix_group.py", line 61, in from sage.groups.libgap_wrapper import ParentLibGAP File "sage/libs/gap/element.pxd", line 32, in init sage.groups.libgap_wrapper (build/cythonized/sage/groups/libgap_wrapper.c:9846) cdef class GapElement(RingElement): ImportError: /usr/lib/python2.7/dist-packages/sage/libs/gap/element.x86_64-linux-gnu.so: undefined symbol: _GAP_SetEnterStackCount -- System Information: Debian Release: bullseye/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 4.19.0-5-amd64 (SMP w/4 CPU cores) Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE=fr (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled Versions of packages sagemath depends on: ii cysignals-tools 1.8.1+ds-2 ii cython0.29.2-2 ii ecl 16.1.3+ds-2 ii eclib-tools 20190226-2 ii fflas-ffpack
Bug#920286: gcc-8: Missing conflict/break with binutils-x86-64-linux-gnu:i386 can lead to broken compiler
Package: gcc-8 Version: 8.2.0-14 Severity: important Dear Maintainer, Probably gcc-8 should be in conflict with binutils-x86-64-linux-gnu:i386 because of the following chain of events: - install an unstable amd64 system - enable multiarch i386 - install gcc-8 - install binutils-x86-64-linux-gnu:i386 => This will (because of a conflict) uninstall binutils-x86-64-linux-gnu Now the compiler is broken with this message: /usr/lib/gcc/x86_64-linux-gnu/8/../../../../x86_64-linux-gnu/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/8/liblto_plugin.so: error loading plugin: /usr/lib/gcc/x86_64-linux-gnu/8/liblto_plugin.so: mauvaise classe ELF : ELFCLASS64 This is because the plugin /usr/lib/gcc/x86_64-linux-gnu/8/liblto_plugin.so is installed by gcc-8 (it is an amd64 executable) but is loaded by ld. Since we can independently install the 32-bit version of the binutils, now we have a 32-bit executable loading a 64-bit library. I am not sure what is the proper fix but clearly it should be impossible to install the 32-bit version of binutils with the 64-bit version of gcc-8 because of this plugin. This probably explains bug #916603 (with gcc-6 instead of gcc-8). Note that it may be strange to install binutils-x86-64-linux-gnu:i386 but somehow APT decided to do it on its own at some point and I did not notice so this can happen automatically. -- System Information: Debian Release: buster/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 4.19.0-1-amd64 (SMP w/4 CPU cores) Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE=fr (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled Versions of packages gcc-8 depends on: ii binutils 2.31.1-11 ii cpp-8 8.2.0-14 ii gcc-8-base8.2.0-14 ii libc6 2.28-5 ii libcc1-0 8.2.0-14 ii libgcc-8-dev 8.2.0-14 ii libgcc1 1:8.2.0-14 ii libgmp10 2:6.1.2+dfsg-4 ii libisl19 0.20-2 ii libmpc3 1.1.0-1 ii libmpfr6 4.0.2~rc1-1 ii libstdc++68.2.0-14 ii zlib1g1:1.2.11.dfsg-1 Versions of packages gcc-8 recommends: ii libc6-dev 2.28-5 Versions of packages gcc-8 suggests: pn gcc-8-doc pn gcc-8-locales ii gcc-8-multilib8.2.0-14 pn libasan5-dbg pn libatomic1-dbg pn libgcc1-dbg pn libgomp1-dbg pn libitm1-dbg pn liblsan0-dbg pn libmpx2-dbg pn libquadmath0-dbg pn libtsan0-dbg pn libubsan1-dbg -- no debconf information
Bug#918993: sagemath-jupyter: Invalid path to sage kernel makes notebook unusable
Package: sagemath-jupyter
Version: 8.4-4
Severity: important
Dear Maintainer,
the jupyter notebook with sage is unusable because the kernel config is invalid,
in /usr/share/jupyter/kernels/sagemath/kernel.json there is:
{"display_name": "SageMath 8.6.rc0",
"argv": ["/build/sagemath-FTVAsu/sagemath-8.6~rc0/debian/build/usr/bin/sage",
"--python", "-m", "sage.repl.ipython_kernel", "-f", "{connection_file}"]}
The hardcoded path contains what looks like a temporary build path, which
does not exists on my system. This makes the sage kernel unusable with jupyuter.
I tried to manually replace the path with /usr/bin/sage and it works.
-- System Information:
Debian Release: buster/sid
APT prefers unstable
APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 4.19.0-1-amd64 (SMP w/4 CPU cores)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE=fr
(charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
Versions of packages sagemath-jupyter depends on:
ii jupyter-client 5.2.3-1
ii jupyter-core4.4.0-2
ii jupyter-nbextension-jupyter-js-widgets 6.0.0-2
ii python-ipykernel4.9.0-1
ii python-ipywidgets 6.0.0-2
ii python-nbconvert5.4-1
ii python-nbformat 4.4.0-1
ii python-notebook 5.4.1-1
ii sagemath8.4-4
sagemath-jupyter recommends no packages.
sagemath-jupyter suggests no packages.
-- no debconf information
Bug#918990: sagemath-common: Invalid hardcoded path in sage-env-config
Package: sagemath-common Version: 8.4-4 Severity: normal Dear Maintainer, the file /usr/share/sagemath/bin/sage-env-config contains the following: export SAGE_LOCAL="/build/sagemath-FTVAsu/sagemath-8.6~rc0/debian/build/usr" (or a variant of it). This path does not exists since it is specific to the build client. Any package or file depending on the value of SAGE_LOCAL to find sage will break. This might be related to a bug I have with the jupyter notebook that calls this path and fails. -- System Information: Debian Release: buster/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 4.19.0-1-amd64 (SMP w/4 CPU cores) Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE=fr (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled Versions of packages sagemath-common depends on: ii python 2.7.15-3 sagemath-common recommends no packages. sagemath-common suggests no packages. -- no debconf information
Bug#913240: geoclue-2.0: Unreasonably high memory usage (memory leak?)
Package: geoclue-2.0 Version: 2.5.1-1 Severity: important Dear Maintainer, the geoclue daemon randomly starts using a lot of memory. It frequently uses more than 1Gio of memory, and does not seem to free any memory when it starts doing so which suggest a memory leak. This can introduce serious problems because the memory increase can be relatively quick and eventually lead to heavy swapping and/or OOM. I have no been able to pinpoint under which circumstances it happens, the system log does not condition any information related to geoclue that could help debug the issue. -- System Information: Debian Release: buster/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 4.18.0-2-amd64 (SMP w/8 CPU cores) Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE=fr (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled Versions of packages geoclue-2.0 depends on: ii adduser 3.118 ii libavahi-client30.7-4+b1 ii libavahi-common30.7-4+b1 ii libavahi-glib1 0.7-4+b1 ii libc6 2.27-8 ii libglib2.0-02.58.1-2 ii libjson-glib-1.0-0 1.4.4-1 ii libmm-glib0 1.8.2-1 ii libnotify4 0.7.7-3 ii libsoup2.4-12.64.1-3 Versions of packages geoclue-2.0 recommends: ii avahi-daemon 0.7-4+b1 ii iio-sensor-proxy 2.4-2 ii modemmanager 1.8.2-1 ii wpasupplicant 2:2.6-18 geoclue-2.0 suggests no packages. -- no debconf information
Bug#910940: sagemath-common: fails to start with error /usr/bin/env: ‘sage-python23’: No such file or directory
Package: sagemath-common Version: 8.3-3 Severity: important Tags: upstream Dear Maintainer, the sage notebook fails to start because there is no sage-python23 installed on my system. Can be reproduced by running sage --notebook A similar issue was raised for other binaries (bug #902545) but for some reason the notebook was not patched, maybe it was forgotten or it requires a special treatement. The upstream version of this file also uses sage-python23 -- System Information: Debian Release: buster/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 4.18.0-2-amd64 (SMP w/8 CPU cores) Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE=fr (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled Versions of packages sagemath-common depends on: ii python 2.7.15-3 ii python2.7 2.7.15-4 sagemath-common recommends no packages. sagemath-common suggests no packages. -- no debconf information
Bug#895549: cups-browsed: Legacy CUPS (1.5.x and before) broadcasted queues are ignored
Package: cups-browsed Version: 1.20.2-1 Severity: important Dear Maintainer, CUPS filters recently changed the way it detects CUPS raw queues [1] by only relying on TXT fields of DNS-SD, which totally breaks legacy CUPS (<=1.5.x) setup because those do not have a TXT record. This was later fixed upstream [2,3] but leaves the current version in a broken state because upstream has not made any point release for this fix. In short, legacy CUPS printers are completely ignored by cups-browsed 1.20.2 and this is problematic because it is a common setup in entreprise. One possibility is to include [2] as a debian patch (it's very short) or wait for a cups-filters upstream release 1.20.3. [1] https://github.com/OpenPrinting/cups-filters/commit/d6323a81a00d8bf 90a636c9bbe9a177ced560d9a [2] https://github.com/OpenPrinting/cups-filters/commit/9766ea347b351ae 403237f076ad085902eab6b85 [3] https://github.com/OpenPrinting/cups-filters/issues/34 -- System Information: Debian Release: buster/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 4.15.0-2-amd64 (SMP w/8 CPU cores) Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE=fr (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled Versions of packages cups-browsed depends on: ii cups-daemon 2.2.7-2 ii libavahi-client3 0.7-3.1 ii libavahi-common3 0.7-3.1 ii libavahi-glib10.7-3.1 ii libc6 2.27-3 ii libcups2 2.2.7-2 ii libcupsfilters1 1.20.2-1 ii libglib2.0-0 2.56.1-1 ii libldap-2.4-2 2.4.45+dfsg-1 ii lsb-base 9.20170808 Versions of packages cups-browsed recommends: ii avahi-daemon 0.7-3.1 cups-browsed suggests no packages. -- Configuration Files: /etc/cups/cups-browsed.conf changed [not included] -- no debconf information
Bug#873634: missing module files libbd_*.so
> apt install libblockdev-crypto2 libblockdev-mdraid2 libblockdev-part2 > libblockdev-fs2 libblockdev-loop2 libblockdev-swap2 > I missed the fact that I also needed to install 'gdisk', otherwise it fails with Cannot load the part plugin: The 'sgdisk' utility is not available This is odd because https://tracker.debian.org/news/866785 mentions gdisks is no longer recommended by the package but is still needed?
Bug#873634: missing module files libbd_*.so
Same problem here. Tracking down the missing files, I found that installing the following packages solves the problem: apt install libblockdev-crypto2 libblockdev-mdraid2 libblockdev-part2 libblockdev-fs2 libblockdev-loop2 libblockdev-swap2
