Bug#896001: RM: slurm-drmaa -- ROM; FTBFS

2018-04-18 Thread Dominique Belhachemi
Package: ftp.debian.org Severity: normal The package is not used anymore.

Bug#887924: slurm-drmaa FTBFS with slurm-llnl 17.11.2-1

2018-04-16 Thread Dominique Belhachemi
The bug is also in Debian's slurm-llnl package. The location of the header files is not consistent anymore. slurm.h is including See https://anonscm.debian.org/git/collab-maint/slurm-llnl. git/commit/debian/libslurm-dev.install?id=08c387553a95e9a4a38047c82cf69a 4f733cee0d

Bug#892201: nlohmann-json build issues with gcc 7.2

2018-03-06 Thread Dominique Belhachemi
Package: nlohmann-json Version: 2.1.1-1 Severity: grave Some applications don't compile with nlohmann-json 2.1.1 and gcc 7.2 . You can find details here: https://github.com/nlohmann/json/issues/742 Please update the package. Thanks -Dominique

Bug#887924: slurm-drmaa FTBFS with slurm-llnl 17.11.2-1

2018-02-06 Thread Dominique Belhachemi
This happens due to a recent change in debian/libslurm-dev.install https://anonscm.debian.org/git/collab-maint/slurm-llnl.git/commit/debian/libslurm-dev.install?id=08c387553a95e9a4a38047c82cf69a4f733cee0d Anyway, I am thinking about removing the slurm-drmaa package from the Debian archive. The

Bug#868112: nlohmann-json-dev: include dir: wrong

2018-01-25 Thread Dominique Belhachemi
Do you mind removing the symbolic link ? lrwxrwxrwx 1 root root 17 Jul 12 2017 /usr/include/json.hpp -> nlohmann/json.hpp -rw-r--r-- 1 root root 428838 Jul 12 2017 /usr/include/nlohmann/json.hpp

Bug#784512: Is anybody working on PySide2?

2017-09-24 Thread Dominique Belhachemi
You can find some pyside2 packages in following Ubuntu PPA sudo apt-get install software-properties-common sudo add-apt-repository ppa:thopiekar/pyside-git sudo apt-get update apt-get install python3-pyside2 For a quick test you can try to compile the packages in Debian testing. # compile and

Bug#863113: unblock: openigtlink/1.11.0-3

2017-05-21 Thread Dominique Belhachemi
debian/watch file + * Fix lintian error: privacy-breach-logo + * Fix: Update to Debian Policy 3.9.8 (no changes) + + -- Dominique Belhachemi <domi...@debian.org> Sun, 23 Apr 2017 18:02:48 -0400 + openigtlink (1.11.0-2) unstable; urgency=medium * added reproducible_build.patch (

Bug#650394: [Pkg-tigervnc-devel] Bug#650394: ITP: tigervnc -- High-speed Virtual Network Computing (VNC)

2016-07-05 Thread Dominique Belhachemi
Liang, the package got rejected due to too many lintian warnings. ( http://lists.alioth.debian.org/pipermail/pkg-tigervnc-devel/Week-of-Mon-20160627/000516.html ) Could you please have a look and re-upload ?

Bug#826022: Does not work with Django 1.8

2016-06-29 Thread Dominique Belhachemi
I am going to upload a new package tonight. Upstream removed only the Python 2.6 support, Python 2.7 is still supported, so I will keep the python2 package. -Dominique

Bug#824032: libsvm: Would it be possible to upgrade the package to the latest upstream release?

2016-05-11 Thread Dominique Belhachemi
Thanks for the update Christian, it will leave all changes up to you guys. Two more comments: 1. Please compare the file size with/without binaries. 828K libsvm-3.21.tar.gz 137K libsvm_3.21+dfsg.orig.tar.gz 2. Please change this to 'all' . Package: python-libsvm Architecture: any

Bug#824032: libsvm: Would it be possible to upgrade the package to the latest upstream release?

2016-05-11 Thread Dominique Belhachemi
I am preparing a NMU to fix #823880 . Your patch looks good, and I can integrate it as well as a new python3-libsvm package.

Bug#823880: libsvm : binary files in source package

2016-05-09 Thread Dominique Belhachemi
Package: libsvm Version: 3.12-1.1 Severity: serious The source package contains binary files, see https://sources.debian.net/src/libsvm/3.12-1.1/windows/ https://sources.debian.net/src/libsvm/3.12-1.1/java/ v3.12 is from 2012, please consider an update to a recent version (

Bug#650394: [Pkg-tigervnc-devel] Bug#650394: ITP: tigervnc -- High-speed Virtual Network Computing (VNC)

2016-04-14 Thread Dominique Belhachemi
Which OS are you using? Could you please test this with sid again? The command 'git-buildpackage' doesn't exist in sid anymore. Instead you can use 'gbp buildpackage' from the git-buildpackage package. BTW, you may need the additional dependency: libdbus-1-dev -Dominique On Tue, Apr 12, 2016

Bug#650394: ITP: tigervnc -- High-speed Virtual Network Computing (VNC)

2016-04-11 Thread Dominique Belhachemi
Hi, I would like to test the current tigervnc packages. How do I build the packages after 'git clone' ? git clone https://anonscm.debian.org/git/pkg-tigervnc/pkg-tigervnc.git pkg-tigervnc/debian/README.source isn't up-to-date anymore. Thanks -Dominique

Bug#802509: libboost-coroutine-dev: The boost-coroutine library is only compiled as a static library

2016-03-20 Thread Dominique Belhachemi
Correction: - libboost-context1.58-dev (= ${binary:Version}) + libboost-context1.58-dev (= ${binary:Version}), + libboost-coroutine1.58.0 (= ${binary:Version}) Not sure what effect (= ${binary:Version}) has on a *-dev package.

Bug#802509: libboost-coroutine-dev: The boost-coroutine library is only compiled as a static library

2016-03-19 Thread Dominique Belhachemi
libboost-coroutine1.58-dev doesn't pull in the corresponding binary package. /usr/lib/x86_64-linux-gnu/libboost_coroutine.so is now a dangling symlink. I think you need following change in debian/control.in Package: libboost-coroutine1.58-dev Homepage: http://www.boost.org/libs/coroutine/

Bug#807979: [Debian-med-packaging] Bug#807979: bamtools cannot open bam files on big endian systems

2015-12-14 Thread Dominique Belhachemi
Control: severity -1 grave The package is useless on big endian systems if it cannot even open a bam file. Please add a test case to the package, so it would FTBFS immediately. Best -Dominique

Bug#807979: bamtools cannot open bam files on big endian systems

2015-12-14 Thread Dominique Belhachemi
Package: bamtools Version: 2.4.0+dfsg-2 Severity: grave This bug affects big endian systems (mips, powerpc, ...) . It is not possible to handle bam files. Here is a quick test case: $ bamtools count -in test.bam bamtools count ERROR: could not open input BAM file(s)... Aborting. I filed a

Bug#671524: Dropping coverage patch in Samtools ?

2015-06-16 Thread Dominique Belhachemi
Hi Charles, Let's just wait for 1.3. The patch isn't critical. Best -Dominique

Bug#780064: ITP: tvc -- genetic variant caller for Ion Torrent sequencing platforms

2015-03-08 Thread Dominique Belhachemi
Package: wnpp Severity: wishlist Owner: Dominique Belhachemi domi...@debian.org * Package name: tvc Version : 4.2.3 Upstream Author : Ion Torrent * URL : https://github.com/iontorrent/ * License : GPL-2+ , MIT/X Programming Lang: C++ Description

Bug#671524: Dropping coverage patch in Samtools ?

2014-11-26 Thread Dominique Belhachemi
On Wed, Nov 26, 2014 at 3:49 AM, Charles Plessy ple...@debian.org wrote: in recent versions of samtools, the mpileup command has a new option to specify the coverage at run time. Would it be fine to drop our patch that was raising the default coverage cap from 8,000 to 1,000,000 ? If yes,

Bug#767411: torque: should not be released with jessie

2014-11-01 Thread Dominique Belhachemi
On Thu, Oct 30, 2014 at 8:42 PM, Dominique Belhachemi domi...@debian.org wrote: I agree that the 2.4 branch is completely outdated. We should switch to a newer branch. The 2.5 and 4.1 branches are not suitable for Debian due to licensing issues. But the 4.2 branch is licensed under

Bug#767411: torque: should not be released with jessie

2014-10-30 Thread Dominique Belhachemi
I agree that the 2.4 branch is completely outdated. We should switch to a newer branch. The 2.5 and 4.1 branches are not suitable for Debian due to licensing issues. But the 4.2 branch is licensed under the same license as the 2.4 branch, so I suggest we upload the 4.2.9 release to unstable.

Bug#746164: Conflicting declarations of function ks_init

2014-10-03 Thread Dominique Belhachemi
On Sun, 27 Apr 2014 16:48:52 +0100 Michael Tautschnig m...@debian.org wrote: Package: htslib Version: 0.2.0~rc3-1 Usertags: goto-cc While compiling the package using our research compiler infrastructure the build failed with the following error: [...] gcc -g -O2 -fstack-protector

Bug#757751: [Python-modules-team] Bug#757751: missing symbol amqp_get_or_create_channel_pool

2014-09-09 Thread Dominique Belhachemi
Based on ( https://github.com/celery/librabbitmq#installation ) I should be able to run a quick example: from librabbitmq import Connection conn = Connection(host=localhost, userid=guest, ... password=guest, virtual_host=/) channel = conn.channel()

Bug#746858: Status of igstk (should we remove the package?)

2014-08-21 Thread Dominique Belhachemi
Hi Andreas, I think you are right, this is a good time to go forward with the removal request. -Dominique On Aug 21, 2014 3:54 AM, Andreas Tille ti...@debian.org wrote: Hi, as you might have noticed igstk is RC buggy and also lagging behind upstream (5.2). If nobody has any interest in

Bug#753647: python-tastypie: please package tastypie for python3

2014-07-16 Thread Dominique Belhachemi
The next upload (in a few days) will contain the package python3-django-tastypie. -Dominique

Bug#721804: python-tastypie: Please rename binary package to python-django-tastypie

2014-07-16 Thread Dominique Belhachemi
I am going to change the name back to python-django-tastypie. This looks like the right name. -Dominique

Bug#753485: samtools: python-pysam FTBFS on mips/mipsel due to issues in samtools

2014-07-02 Thread Dominique Belhachemi
Hi Aleksandar, Thanks for the patches. Could you please explain what the issue is and how the patch fixes it? I don't see any comments in the patch. Does upstream accept your patch? Thanks -Dominique

Bug#731823: Fixed in mentors, can anybody please sponsor?

2014-05-09 Thread Dominique Belhachemi
Thanks Gianfranco, If you have some time, could you please help Anton with vtk6? https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=747108 -Dominique

Bug#737190: vtk6 and tcl-vtk: error when trying to install together

2014-01-31 Thread Dominique Belhachemi
I am surprised to see a vtk6 package in unstable. Please remove it and test it in experimental. -Dominique

Bug#735248: multiarch-python-include-dirs.diff has bad side-effects

2014-01-13 Thread Dominique Belhachemi
Package: cmake Version: 2.8.12.1-1.1 Severity: serious Please drop patch: http://anonscm.debian.org/gitweb/?p=collab-maint/cmake.git;a=blob;f=debian/patches/multiarch-python-include-dirs.diff;hb=master With the patch, other cmake based projects fail to build whenever PYTHON_INCLUDE_DIR is

Bug#732362: vtk 5.10.1 for jessie

2013-12-17 Thread Dominique Belhachemi
The transition to 6.x is not realistic, most downstream projects did not switch to the new version, there are so many API changesbut it would be nice to have a vtk 6 package available in unstable(must conflict with vtk 5). I will build a local 5.10 package and rebuild all reverse dependencies

Bug#731655: [gregsharp-gu...@moszumanska.debian.org: r15466 - trunk/packages/plastimatch/trunk/debian]

2013-12-09 Thread Dominique Belhachemi
Hi Andreas, please go ahead with the upload. -Dominique

Bug#730743: igtl_win32header.h: No such file or directory

2013-11-28 Thread Dominique Belhachemi
Package: openigtlink Version: 1.10.4~git20131104+3ac531115f-2 Severity: grave https://github.com/openigtlink/OpenIGTLink/issues/29 Applications which include igtl_util.h (e.g. OpenIGTLinkIF/MRML/vtkIGTLToMRMLImage.cxx) fail to build due to a missing file:

Bug#729932: failing tests on armel

2013-11-18 Thread Dominique Belhachemi
Package: openigtlink Version: 1.10.4~git20131104+3ac531115f-1 https://buildd.debian.org/status/fetch.php?pkg=openigtlinkarch=armelver=1.10.4~git20131104%2B3ac531115f-1stamp=1384133869 The following tests FAILED: 15 - igtl_point_test_01 (Failed) 16 - igtl_tdata_test_01 (Failed)

Bug#728875: Keep kwwidgets in debian ?

2013-11-06 Thread Dominique Belhachemi
Isn't it a dependency for volview? On Wed, Nov 6, 2013 at 7:38 AM, Mathieu Malaterre ma...@debian.org wrote: Package: kwwidgets Severity: important Since 3D Slicer is only available in squeeze: http://packages.debian.org/squeeze/slicer should we still keep kwwidgets in debian ?

Bug#641484: Torque: New upstream release

2013-07-09 Thread Dominique Belhachemi
applies to all TORQUE releases from 2.5 and later. Is that what you need or do you want it to be in the license itself. Ken On Wed, Jul 3, 2013 at 9:41 AM, Dominique Belhachemi domi...@debian.orgwrote: Ken, Could you please clarify which parts of TORQUE fall under the additional TORQUE v2.5

Bug#641484: Torque: New upstream release

2013-07-09 Thread Dominique Belhachemi
The original license PBS_License.txt contains: 5. [...] all modifications and additions to the Software must be freely redistributable by any party (including Licensor) without restriction. But the TORQUE v2.5+ Software License v1.1 contains additional restrictions.

Bug#641484: Torque: New upstream release

2013-07-03 Thread Dominique Belhachemi
Upstream finally reverted the license change which blocked the upload into Debian. See http://www.supercluster.org/pipermail/torquedev/2012-January/003946.html commit 57552897eb5d6fd8304a514c00b4b8804f840bd1 Author: Ken kniel...@adaptivecomputing.com Date: Fri May 3 09:30:22 2013 -0600

Bug#641484: Torque: New upstream release

2013-07-03 Thread Dominique Belhachemi
Ken, Could you please clarify which parts of TORQUE fall under the additional TORQUE v2.5+ Software License v1.1 license? Thanks -Dominique On Wed, Jul 3, 2013 at 10:58 AM, Dominique Belhachemi domi...@debian.orgwrote: Upstream finally reverted the license change which blocked the upload

Bug#644352: Removal of Slicer (Was: Bug#644352: python2.6 removal)

2013-05-14 Thread Dominique Belhachemi
for such problems as over-panicking. May be delaying the removal some time might be reasonable. Kind regards Andreas. On Mon, May 13, 2013 at 10:57:32PM -0400, Dominique Belhachemi wrote: Hi Luca, Yes please, go ahead. I will add it back once it is buildable again. -Dominique

Bug#644352: python2.6 removal

2013-05-13 Thread Dominique Belhachemi
Hi Luca, Yes please, go ahead. I will add it back once it is buildable again. -Dominique On May 13, 2013 10:54 AM, Luca Falavigna dktrkr...@debian.org wrote: Hi Dominique! slicer3 is one of the packages needed to be rebuilt to get rid of python2.6 dependencies. As it currently FTBFS, I

Bug#644352: slicer Debian

2013-03-11 Thread Dominique Belhachemi
, Yaroslav Halchenko y...@debian.org wrote: Hi Dominique, Could you please refresh my memory on the status of slicer in Debian? Would you need help in maintaining it (e.g. to push forward packaging of slicer4) etc? Thank you in advance! Yaroslav On Fri, 04 May 2012, Dominique Belhachemi

Bug#683180: failing tests

2012-07-29 Thread Dominique Belhachemi
Source: plastimatch Builds of plastimatch contain test suite failures, as you can see in the logs files at https://buildd.debian.org/status/package.php?p=plastimatch I made failing tests fatal on amd64, i386, kfreebsd-amd64, and kfreebsd-amd64 which results in a FTBFS on those

Bug#672729: No rule to make target `/usr/lib/libmysqlclient.so', needed by `bin/libvtkgdcmJava.so'. Stop

2012-05-15 Thread Dominique Belhachemi
Hi Mathieu, It was my intention to remove that patch. I am not even sure if that patch was working. I would say that we forget that patch and try to solve the problem within cmake. vtk is not the only package suffering under the multiarch/cmake issue. -Dominique On Tue, May 15, 2012 at 7:35

Bug#672968: VTK 5.8 for Wheezy

2012-05-14 Thread Dominique Belhachemi
Package: vtk Severity: wishlist The wheezy freeze is coming soon and I suggest we are using vtk 5.8 for this release. Another transition is risky and doesn't seem to be necessary. All ~30 dependent packages have been linked against 5.8 and seem to work well. -Dominique -- To UNSUBSCRIBE,

Bug#671958: igstk: FTBFS: make[3]: *** No rule to make target `/usr/lib/libQtGui.so', needed by `bin/libIGSTK.so.4.4.0'. Stop.

2012-05-11 Thread Dominique Belhachemi
Hi Andreas, You are right, some files have moved (e.g. /usr/lib/x86_64-linux-gnu/libQtGui.so ). I will patch the code soon. Cheers -Dominique -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org

Bug#671524: samtools depth caps coverage at 8000

2012-05-04 Thread Dominique Belhachemi
Package: samtools Version: 0.1.18-1 samtools depth sets a cap of 8000 for coverage. It becomes an issue when used to calculate depth for targeted sequencing applications. Attached patch increases the threshold to 1 million. Is this safe to apply? Thanks -Dominique Index: bam2depth.c

Bug#644352: slicer Debian

2012-05-04 Thread Dominique Belhachemi
Hi Yaroslav, Slicer3 is not supported by upstream anymore. Slicer4 is only supported on amd64 and is still based on non released projects (VTK 5.10, CTK, PythonQt). Slicer4 also comes with a pre-build launcher binary which has to be replaced by our own launcher script. Cheers -Dominique On

Bug#657413:

2012-04-22 Thread Dominique Belhachemi
I am going to upload a simple workaround very soon. I just have to update patches/110-kernel.diff . -Dominique -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org

Bug#645193: pbs-drmaa-dev and libdrmaa-dev: error when trying to install together

2012-04-22 Thread Dominique Belhachemi
I updated pbs-drmaa and slurm-drmaa to use Debian's alternative system. I would like to do the same with the current libdrmaa1.0 package which is gridengine specific. To stay compatible to the other implementations I would like to change some binary package names as well. libdrmaa1.0 -

Bug#668467: ITP: slurm-drmaa -- PSNC DRMAA for Simple Linux Utility for Resource Management (SLURM)

2012-04-11 Thread Dominique Belhachemi
Package: wnpp Severity: wishlist PSNC DRMAA for Simple Linux Utility for Resource Management (SLURM) is an implementation of the Open Grid Forum DRMAA 1.0 (Distributed Resource Management Application API) specification for submission and control of jobs to Simple Linux Utility for Resource

Bug#667878: vtk: FTBFS: ('const class boost::detail::reverse_graph_edge_descriptorvtkEdgeType' has no member named 'underlying_desc')

2012-04-08 Thread Dominique Belhachemi
Hi, What is preferred by the release team? a) Upload 5.8.0-9 with a cherry picked fix from vtk-5.10.0-rc1 b) Uploading the fresh release candidate vtk-5.10.0-rc1 c) Waiting for vtk-5.10.1 ? I would go for a) followed by c). -Dominique On Sat, Apr 7, 2012 at 5:13 AM, Adam D. Barratt

Bug#657943: error while loading shared libraries: libitkvnl_algo.so.3.20

2012-01-29 Thread Dominique Belhachemi
Package: libinsighttoolkit3.20 Severity: serious The removal of some vxl binaries causes ANTS and other packages to crash. You can reproduce the problem by executing ANTS. $ ANTS ANTS: error while loading shared libraries: libitkvnl_algo.so.3.20: cannot open shared object file: No such file or

Bug#655788: [Debian-med-packaging] Bug#655788: Bug#655788: igstk: FTBFS: libITKIO.so: undefined reference to `gdcm::PixmapToPixmapFilter::SetInput(gdcm::Pixmap const)'

2012-01-22 Thread Dominique Belhachemi
On Sun, Jan 22, 2012 at 1:40 AM, Steve M. Robbins st...@sumost.ca wrote: On Sat, Jan 21, 2012 at 11:12:45PM -0500, Dominique Belhachemi wrote: Hi Steve, It occurred in a clean pbuilder environment on amd64 and the build used the latest itk package:    Setting up libvxl1.14 (1.14.0-14

Bug#656922: missing doxy_header.html file

2012-01-22 Thread Dominique Belhachemi
Source: vxl Hi, igstk (and other reverse dependencies) FTBFS due to missing file in the vxl binary packages. I cite the relevant part from http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=655788 CMake Warning at /usr/lib/InsightToolkit/UseITK.cmake:53 (FIND_PACKAGE):

Bug#655788: igstk: FTBFS: libITKIO.so: undefined reference to `gdcm::PixmapToPixmapFilter::SetInput(gdcm::Pixmap const)'

2012-01-21 Thread Dominique Belhachemi
The package FTBFS now with: dpkg-source: info: using source format `3.0 (quilt)' dpkg-source: info: patches are not applied, applying them now dpkg-source: info: applying 12_doxygen.diff dpkg-source: info: applying 34_disable_resource_intensely_tests.diff dpkg-source: info: applying

Bug#655788: [Debian-med-packaging] Bug#655788: igstk: FTBFS: libITKIO.so: undefined reference to `gdcm::PixmapToPixmapFilter::SetInput(gdcm::Pixmap const)'

2012-01-21 Thread Dominique Belhachemi
, What architecture is the following log from? On Sat, Jan 21, 2012 at 05:48:52PM -0500, Dominique Belhachemi wrote: The package FTBFS now with: CMake Warning at /usr/lib/InsightToolkit/UseITK.cmake:53 (FIND_PACKAGE):   Could not find module FindVXL.cmake or a configuration file for package

Bug#644352:

2012-01-19 Thread Dominique Belhachemi
Slicer4 is currently using development versions of pythonqt and ctk. I have to wait for a new upstream release of those packages before I can continue working on the slicer4 package. -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble?

Bug#645193:

2012-01-10 Thread Dominique Belhachemi
Package: libdrmaa-dev Severity: important I added conflicts to the gridengine packages. But the main issue persists, the package names for gridengine's drmaa implementations are too general. -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe.

Bug#645042: please provide python-vtk-dbg package with dynamic libraries built against python*-dbg

2012-01-09 Thread Dominique Belhachemi
I tried to generate a debug package for vtk but the resulting package didn't contain the symbols needed for python. 115390 libvtk5-qt4-dev_5.8.0-6_amd64.deb 466178 libvtk5.8-qt4_5.8.0-6_amd64.deb 595994 vtk-examples_5.8.0-6_all.deb 2885736 libvtk5-dev_5.8.0-6_amd64.deb

Bug#654839: paraview should depend on libvtk5-dev

2012-01-07 Thread Dominique Belhachemi
On Sat, Jan 7, 2012 at 2:08 PM, Steve M. Robbins st...@sumost.ca wrote: On Sat, Jan 07, 2012 at 10:22:36AM +0100, Mathieu Malaterre wrote: Really it boils down to two things: - What is upstream position on this ? If upstream really do want to release  paraview on fixed schedule, with backward

Bug#635342: CVE-2011-2193: Multiple buffer overflows

2012-01-05 Thread Dominique Belhachemi
There is a long email thread on upstream's mailing list and I am not sure if we can update to 2.5. http://www.supercluster.org/pipermail/torquedev/2011-January/003342.html Let's see what people on debian-legal are thinking. http://lists.debian.org/debian-legal/2012/01/msg00030.html Thanks

Bug#654839: paraview should depend on libvtk5-dev

2012-01-05 Thread Dominique Belhachemi
Package: paraview Severity: serious Please remove Paraview's VTK directory and link instead against Debian's vtk libraries. Thanks -Dominique

Bug#649339: vtk 5.8 transition

2011-12-06 Thread Dominique Belhachemi
Thanks Julien! gdcm FTBFS, #650935 This should work with vtk 5.8.0-5 . (Tested successfully on amd64) kwwidgets FTBFS, #650936 Can be removed from testing. igstk itksnap libmesh vtkedge Please schedule those packages if possible. Cheers -Dominique -- To UNSUBSCRIBE, email to

Bug#650025: /bin/sh: 1: /usr/lib//vtkEncodeString: not found

2011-11-26 Thread Dominique Belhachemi
/bin/sh: 1: /usr/lib//vtkEncodeString: not found I am going to move vtkEncodeString to /usr/bin where it belongs to. This will create temporarily a conflict with the current paraview package. It looks like that future paraview releases don't ship this file anymore, so uploading the new paraview

Bug#649339: vtk 5.8 transition

2011-11-22 Thread Dominique Belhachemi
Those packages build-depend on vtk. Please schedule a rebuild if possible. Thanks. activiz.net ants caret gdcm ifrit igstk itksnap kwwidgets libmesh odin openmeeg salome therion vtkedge yade -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of

Bug#649339: vtk 5.8 transition

2011-11-19 Thread Dominique Belhachemi
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: transition Hi, I would like to upload vtk-5.8.0 to unstable. It fixes the dependency issues we had with vtk-5.6 but might also break a few packages. Is it a bad time to start the transition?

Bug#648269: libdrmaa1.0 dependency

2011-11-10 Thread Dominique Belhachemi
On Thu, Nov 10, 2011 at 5:20 AM, Michael Hanke m...@debian.org wrote: Hey, On Wed, Nov 09, 2011 at 10:44:05PM -0500, Dominique Belhachemi wrote: Please remove libdrmaa1.0 from the Depends field. Instead libdrmaa1.0 and pbs-drmaa1 could be mentioned in the Suggests field. Both packages offer

Bug#645193: pbs-drmaa-dev and libdrmaa-dev: error when trying to install together

2011-11-09 Thread Dominique Belhachemi
reassign 645193 libdrmaa-dev I added conflicts to the pbs-drmaa package Conflicts: libdrmaa-dev ( 6.2u5-3) Conflicts: libdrmaa1.0 ( 6.2u5-3) Upcoming gridengine packages should be renamed so that libdrmaa-dev can be used as a virtual package. -- To UNSUBSCRIBE, email to

Bug#648269: libdrmaa1.0 dependency

2011-11-09 Thread Dominique Belhachemi
Package: drmaa Version: 0.4~b3 Please remove libdrmaa1.0 from the Depends field. Instead libdrmaa1.0 and pbs-drmaa1 could be mentioned in the Suggests field. Both packages offer a drmaa implementation. Thanks Dominique -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org

Bug#647599: python-tastypie: Dependency on python-mimeparse needed

2011-11-04 Thread Dominique Belhachemi
Hi Markus, Thanks for the report. I am in contact with the python-mimeparse maintainer and will upload it into unstable today. All the other changes you are mentioning will be applied to tastypie as well. Dominique -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a

Bug#526350: ITP: python-django-celery -- Distributed task queue framework

2011-11-04 Thread Dominique Belhachemi
Hi, What is the status of this ITP? Any help needed? Dominique -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org

Bug#647314: Security issue (no CVE yet)

2011-11-01 Thread Dominique Belhachemi
Thanks for the report, I am going to package 0.9.10 to fix the issue. Dominique On Tue, Nov 1, 2011 at 3:49 PM, Moritz Muehlenhoff j...@debian.org wrote: Package: django-tastypie Severity: grave Tags: security Please see

Bug#640662:

2011-10-30 Thread Dominique Belhachemi
Yes, I would like to help with MapReduce. I will perform some tests in experimental and then upload to unstable. Dominique On Thu, Oct 27, 2011 at 4:18 PM, Mathieu Malaterre mathieu.malate...@gmail.com wrote: block 640662 by 646757 thanks MapReduce MPI has been packaged as separate package.

Bug#646179: ITP: django-tastypie -- webservice API framework for Django

2011-10-21 Thread Dominique Belhachemi
Package: wnpp Severity: wishlist Owner: Dominique Belhachemi domi...@debian.org * Package name: django-tastypie Version : 0.9.7 Upstream Author : Daniel Lindsley * URL : http://django-tastypie.readthedocs.org/en/latest/index.html * License : BSD Programming

Bug#646181: ITP: calabash -- Bash-style pipelining syntax for Python generators

2011-10-21 Thread Dominique Belhachemi
Package: wnpp Severity: wishlist Owner: Dominique Belhachemi domi...@debian.org * Package name: calabash Version : 0.0.3 Upstream Author : Zachary Voase * URL : http://pypi.python.org/pypi/calabash * License : Public Domain Programming Lang: Python

Bug#646183: ITP: jsonpipe -- Convert JSON to a UNIX-friendly line-based format

2011-10-21 Thread Dominique Belhachemi
Package: wnpp Severity: wishlist Owner: Dominique Belhachemi domi...@debian.org * Package name: jsonpipe Version : 0.0.7 Upstream Author : Zachary Voase * URL : http://pypi.python.org/pypi/jsonpipe * License : Public Domain Programming Lang: Python

Bug#554036: Please remove confusing config files in /etc/gridengine

2011-10-19 Thread Dominique Belhachemi
I stumble upon a related configuration problem. What do I have to do if I want to change bootstrap options? admin_user sgeadmin default_domain none ignore_fqdn false spooling_method berkeleydb spooling_liblibspoolb spooling_params

Bug#645193: pbs-drmaa-dev and libdrmaa-dev: error when trying to install together

2011-10-13 Thread Dominique Belhachemi
Here is a list of files that are known to be shared by both packages (according to the Contents file for sid/amd64, which may be slightly out of sync):  /usr/include/drmaa.h  /usr/lib/libdrmaa.so Those files might conflict as well: /usr/lib/libdrmaa.so.x.y /usr/lib/libdrmaa.la

Bug#644882: ITP: pbs-drmaa -- DRMAA for Torque/PBS Pro

2011-10-09 Thread Dominique Belhachemi
Package: wnpp Severity: wishlist Owner: Dominique Belhachemi domi...@debian.org DRMAA for Torque/PBS Pro library is an implementation of OGF DRMAA 1.0 (Distributed Resource Management Application API) specification for the submission of jobs to Torque and PBS Professional systems. Package name

Bug#641484: Torque: New upstream release

2011-10-04 Thread Dominique Belhachemi
The 2.5.x branch will continue to have minor features and functionality added to it. The build has been deployed successfully in many environments and is considered reliable. Build torque-2.5.5.tar.gz is the latest release and the one we recommend most sites use. That branch is also based on

Bug#644352: don't let Slicer3 migrate to testing

2011-10-04 Thread Dominique Belhachemi
Package: slicer Severity: serious Keep Slicer3 out of testing, I am working on Slicer4... Dominique -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org

Bug#635342: CVE-2011-2193: Multiple buffer overflows

2011-07-25 Thread Dominique Belhachemi
Hi Moritz, Thanks for finding the security issue. We are working on a solution. Jordi, can you help out with the squeeze fix and upload? I think you have done those things before, right? Cheers Dominique On Mon, Jul 25, 2011 at 8:10 AM, Moritz Muehlenhoff j...@debian.org wrote: Package:

Bug#628114: sofa-framework: Transition to tinyxml 2.6.2

2011-05-29 Thread Dominique Belhachemi
On Sun, May 29, 2011 at 4:12 AM, Mehdi Dogguy me...@dogguy.org wrote: Do you mind if we NMU your package, or do you intend to upload a fixed version really soon? Hi Mehdi, I don't mind at all. Please go ahead with the NMU. Dominique -- To UNSUBSCRIBE, email to

Bug#626480: xpbsmon: clicking [Pref..] button causes bad variable name tcl error

2011-05-12 Thread Dominique Belhachemi
On Thu, 2011-05-12 at 22:14 +1200, Hamish wrote: In xpbsmon if I click the [Pref..] button to change the server name from the default torqueserver to my local one, I get a tcl popup error: bad variable name pref.top.box1(entryval,1): upvar won't create a scalar variable that looks like an

Bug#613539: 64 bit GNU/kFreeBSD test

2011-04-15 Thread Dominique Belhachemi
With 4GB of memory it compiles until here: $ make [SNIP] [ 92%] Building /home/domibel/insighttoolkit-3.20.0/obj-x86_64-kfreebsd-gnu/Wrapping/WrapITK/Java/InsightToolkit/VXLNumericsJava.class cd /home/domibel/insighttoolkit-3.20.0/obj-x86_64-kfreebsd-gnu/Wrapping/WrapITK/Java /usr/bin/javac

Bug#613539: 64 bit GNU/kFreeBSD test

2011-04-12 Thread Dominique Belhachemi
Here is a test on a 64 bit GNU/kFreeBSD virtual machine. ### 1 ### VM with 1GB memory. The bottleneck seems to be the python wrapping for itkImageToImageFilterBPython. I am getting the error virtual memory exhausted: Cannot allocate memory [ 22%] Building CXX object

Bug#621950: z88: FTBFS: /usr/include/gtk-2.0/gdk/gdkpixbuf.h:37:35: fatal error: gdk-pixbuf/gdk-pixbuf.h: No such file or directory

2011-04-10 Thread Dominique Belhachemi
clone 621950 -1 -2 reassign -2 libgtk2.0-dev block -1 -2 On Sat, 9 Apr 2011, Lucas Nussbaum wrote: Building C object CMakeFiles/z88g.dir/clr88.c.o In file included from /usr/include/gtk-2.0/gdk/gdkcairo.h:28:0, from /usr/include/gtk-2.0/gdk/gdk.h:33, from

Bug#622191: O: z88 -- Finite Element Analysis Program

2011-04-10 Thread Dominique Belhachemi
Package: wnpp Severity: normal I no longer use this package and therefore orphan it. -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org

Bug#619654: dcmtk: docs are generated on all build machines

2011-03-25 Thread Dominique Belhachemi
Package: dcmtk Version: 3.6.0-4 Hi, the package dcmtk-doc needs to get build only once. It is not necessary to build the same package on all architectures again. Some targets in debian/rules have to be changed, e.g. -build: build-arch build-indep +build: build-arch Thanks Dominique --

Bug#618736: insighttoolkit: couldn't load file /usr/lib/InsightToolkit/WrapITK/lib/libVXLNumericsTcl.so

2011-03-17 Thread Dominique Belhachemi
Package: insighttoolkit Version: 3.20.0-8 Hi Steve, The variable libPath in /usr/share/tcltk/tcl8.5/insighttoolkit3/pkgIndex.tcl points to the wrong directory. I think set libPath /usr//lib/InsightToolkit/WrapITK/lib should be changed to set libPath /usr/lib You can reproduce this

Bug#618519: Bug#618183: vtkedge: FTBFS: /bin/sh: /usr/bin/vtkEncodeString:

2011-03-15 Thread Dominique Belhachemi
On Tue, Mar 15, 2011 at 5:14 PM, Mehdi Dogguy me...@dogguy.org wrote: [ 19%] Generating vtkKWEWireframePainter_vs.cxx /bin/sh: /usr/bin/vtkEncodeString: not found make[3]: *** [Rendering/vtkKWEWireframePainter_vs.cxx] Error 127 Looks like this failure is due to a typo in

Bug#618403: VTK 5.6 transition

2011-03-15 Thread Dominique Belhachemi
On Tue, Mar 15, 2011 at 12:17 PM, Julien Cristau jcris...@debian.orgwrote: On Mon, Mar 14, 2011 at 17:56:41 -0400, Dominique Belhachemi wrote: Package: release.debian.org User: release.debian@packages.debian.org Usertags: transition Hi, I prepared a new vtk-5.6 package

Bug#618403: VTK 5.6 transition

2011-03-14 Thread Dominique Belhachemi
Package: release.debian.org User: release.debian@packages.debian.org Usertags: transition Hi, I prepared a new vtk-5.6 package. Please binNMU following source packages: fslview gdcm ifrit igstk itksnap kwwidgets salome therion vtkedge ants libmesh openmeeg Cheers -Dominique -- To

Bug#565002: ftbfs with gcc-4.5 bugs

2011-03-14 Thread Dominique Belhachemi
Hi Andreas, Your patch looks fine. I will postpone the upload of igstk-4.4 and will upload igstk-4.2.0-4 right now. FYI, the package builds fine even without the patch. Something has changed in gcc-4.5 again. ;) But I will keep your change because it looks cleaner. Thanks -Dominique -- To

Bug#565002: ftbfs with gcc-4.5 bugs

2011-03-08 Thread Dominique Belhachemi
On Tue, 8 Mar 2011, Andreas Tille wrote: Hi, Matthias Klose pointed out that the bugs listed under http://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-gcc-4.5;users=debian-...@lists.debian.org;maint=debian-med-packag...@lists.alioth.debian.org will be RC critical soon once gcc-4.5 will

Bug#615131: libslicer3-dev and libmrml1-dev: error when trying to install together

2011-03-08 Thread Dominique Belhachemi
Hi, I am going to fix this in the libslicer3-dev package with my next upload. The library /usr/lib/libMRML.so will be moved to a private location. This should fix the conflict. Thanks Dominique On Fri, 2011-02-25 at 23:58 +0100, Ralf Treinen wrote: Package: libmrml1-dev,libslicer3-dev

Bug#614519: insighttoolkit: please turn on optimized registration methods

2011-02-21 Thread Dominique Belhachemi
Package: insighttoolkit Version: 3.20.0-8 Hi Steve, Please build the insighttoolkit package with the following option turned on. -DITK_USE_OPTIMIZED_REGISTRATION_METHODS:BOOL=ON -DITK_USE_TRANSFORM_IO_FACTORIES:BOOL=ON This is needed by some slicer modules for faster registration. Thanks

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