Bug#1014635: ant: 'ant -version' reports unexpect compile data

2022-07-09 Thread Egon Willighagen
Package: ant Version: 1.10.12-1 Severity: normal X-Debbugs-Cc: egon.willigha...@gmail.com Dear Maintainer, when requesting the version of Apache Ant installed it reports the date on which it was compiled, but the date probably wrong :) For stable: $ ant -version Apache Ant(TM) version 1.10.9 c

Bug#948286: maven: CDK 2.3 fails to compile with Maven 3.6.2 with ClassNotFoundException

2020-01-07 Thread Egon Willighagen
Just for clarity, I am not sure it is a CDK problem. I gave another pom.xml with the same file, that does not depend on the CDK. Of course, it may still depend on the same library as the CDK does. I just gave libcdk-java as one example where I ran into the problem. I just ran 'mvn clean install' a

Bug#948286: maven: CDK 2.3 fails to compile with Maven 3.6.2 with ClassNotFoundException

2020-01-07 Thread Egon Willighagen
I've just installed the libplexus-utils2-java from Testing and can confirm that resolves the problem. So, the dep on that package needs a version upgrade. Simple fix :) Egon

Bug#948286: maven: CDK 2.3 fails to compile with Maven 3.6.2 with ClassNotFoundException

2020-01-06 Thread Egon Willighagen
Package: maven Version: 3.6.2-1 Severity: important Dear Maintainer, recently, CDK (libcdk-java) 2.3 hit testing and I have it installed on my Stable system. But it depends on Maven >= 3.6.1 so I installed the version from Testing (see below). But for the CDK 2.3 sources as well as another Mave

Bug#927056: groovy: Groovy gives warning with OpenJDK 11 about illegal reflective access

2019-04-14 Thread Egon Willighagen
Package: groovy Version: 2.4.16-2 Severity: normal Dear Maintainer, with OpenJDK 11 (which seems to be the default in Buster) Groovy gives a warning at start up time, for any Groovy script. $ groovy -e "foo = \"Foo\"" WARNING: An illegal reflective access operation has occurred WARNING: Illegal

Bug#922450: virtualbox: resuming a saved VM state of Linux guest operating systems fails

2019-02-16 Thread Egon Willighagen
A further update: I just reinstalled Linux Mint 19.1 from scratch (the live image iso) and that worked.

Bug#922450: virtualbox: resuming a saved VM state of Linux guest operating systems fails

2019-02-16 Thread Egon Willighagen
Dear Michael, On Sat, Feb 16, 2019 at 10:43 AM Michael Ott wrote: > I believe that you have mounted shared folders? > I might have (not sure), because I don't now. They do not show up in the VB manager and not in the guest host either (when I boot it from scratch). Also nothing in /etc/fstab in

Bug#922450: virtualbox: resuming a saved VM state of Linux guest operating systems fails

2019-02-16 Thread Egon Willighagen
Package: virtualbox Version: 6.0.4-dfsg-5 Severity: normal Dear Maintainer, I am running Debian Testing and since recently (1-3 weeks?) an update of VirtualBox (I think the version that restored the "Start/Resume" buttons that got missing some months ago), restoring saved states for Linux guests

Bug#768651: possible workaround?

2014-11-09 Thread Egon Willighagen
Hi all, I just had a look a the source package, that but is beyond my capabilities and available time to learn all the things in this nas package. In addition to binNMUs, the problem also shows up for multiarch environments, like mine. For example, because you have i386 Skype installed on a amd64

Bug#682760: build instructions for Debian

2013-08-07 Thread Egon Willighagen
OSRA 2.0 has been released and Rich Apodaca provides build instructions for Ubuntu in his blog, which may be useful for packaging this for Debian too. http://metamolecular.com/blog/2013/08/07/reading-chemical-structures-from-images-with-osra-2-0/ Egon -- To UNSUBSCRIBE, email to debian-bugs-di

Bug#675933: oss4: changelog marks wrong bug as closed

2012-06-04 Thread Egon Willighagen
Package: oss4 Version: 4.2-build2004-1 Severity: normal The release on Date: Tue, 14 Jun 2011 10:06:56 -0500 closed the wrong bug. The below is a snippet from the changelog: Closes: 589127 595298 604679 619272 627149 628879 and * debian/control: adjust linux-headers dependencies (Closes: #6

Bug#609652: bug still present

2012-06-04 Thread Egon Willighagen
While I was looking for another bugreport I made, I saw this one again, and while now about 17 months old, it was easy to reproduce: $ reportbug /usr/lib/pymodules/python2.7/reportbug/ui/gtk2_ui.py:453: PangoWarning: pango_layout_set_width: assertion `layout != NULL' failed gtk.main () /usr/lib/

Bug#675092: calligrasheets does not start from the command line

2012-05-29 Thread Egon Willighagen
Package: calligrasheets Version: 1:2.4.1-1 Severity: normal I cannot start the program from the command line: $ calligrasheets sheets(365)/kdecore (services) KServiceFactory::findServiceByDesktopPath: "sheetspart.desktop" not found sheets(365)/kdecore (services) KServiceFactory::findServiceByDes

Bug#674626: wishlist: update package to cinfony 1.1

2012-05-25 Thread Egon Willighagen
Package: python-cinfony Version: 1.0-1 Severity: wishlist Tags: upstream Cinfony 1.1 has been released and supports CDK 1.4.x, which is requested to be sponsored for unstable, but blocked by being binary incompatible with Cinfony 1.0. -- System Information: Debian Release: wheezy/sid APT pref

Bug#635182: comments

2012-05-01 Thread Egon Willighagen
Some comments regarding updating the package for CDK 1.4.x ... - r-cran-rjava no longer needed, as R interaction code has been removed (*) - SVN is replaced with Git, with the main Git repos at https://github.com/cdk/cdk/ - the Suggests: should be removed - CDK 1.4 no longer has CLI tools, so the

Bug#635182: libcdk-java: new upstream release 1.4.1

2011-07-23 Thread Egon Willighagen
Package: libcdk-java Version: 1:1.2.10-2 Severity: wishlist I released the new stable series, and the first update release, 1.4.1, just hit SourceForge. Egon -- System Information: Debian Release: wheezy/sid APT prefers testing APT policy: (500, 'testing'), (300, 'unstable'), (1, 'experimen

Bug#631941: kcharselect: application crashes when Latin-1 Supplement is chosen

2011-06-28 Thread Egon Willighagen
Package: kcharselect Version: 4:4.6.3-1 Severity: normal Tags: wheezy For at least DejaVu Sans and Serif, selecting Latin-1 Supplement from the drop down box causes a crash of the application with this crash information: Thread 1 (Thread 0xb57a1710 (LWP 18454)): [KCrash Handler] #7 0xb756cad0 i

Bug#628879: RFP: libcmlxom-java -- Java reference implementation of the Chemical Markup Language schema

2011-06-01 Thread Egon Willighagen
Package: wnpp Severity: wishlist Package name: libcmlxom-java Version : 3.0; reported 2011-06-02 Upstream Author : Peter Murray-Rust Group URL : https://bitbucket.org/wwmm/cmlxom/overview License : Artistic License 2.0 Programming Lang: Java Descripti

Bug#627712: Patch applied

2011-05-28 Thread Egon Willighagen
The patch by Onkar has been applied, and I released 1.2.10. I have not had time, unfortunately, to test the inclusion in rebuild .deb packages. -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org

Bug#627582: 1.2.10 released

2011-05-28 Thread Egon Willighagen
1.2.10 is now released. So, consider this a request for update to that version, rather than the (now) older 1.2.9 :) -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org

Bug#627712: libcdk-java: XML config files missing from cdk-core.jar

2011-05-23 Thread Egon Willighagen
Package: libcdk-java Version: 1:1.2.8-1 Severity: grave Justification: renders package unusable While helping the user who reported bug #627683 with the missing dependencies, we discovered that xml data files are missing from the resulting jars, or at least cdk-core.jar, which should give somethin

Bug#627582: libcdk-java: update to version 1.2.9 released 2011-05-21

2011-05-22 Thread Egon Willighagen
Package: libcdk-java Version: 1:1.2.8-1 Severity: wishlist A quick ping that I released version 1.2.9 yesterday, including the patch from Onkar. -- System Information: Debian Release: wheezy/sid APT prefers testing APT policy: (500, 'testing'), (300, 'unstable') Architecture: i386 (i686) Ke

Bug#627523: libcdk-java should depend on libstdc++5, so that the InChI part works

2011-05-21 Thread Egon Willighagen
Package: libcdk-java Version: 1:1.2.8-1 Severity: normal The jni-inchi functionality used in the cdk-inchi.jar requires the libstdc++5 package to be installed, to provide libstdc++.so.5, because you otherwise run into this exception: Caused by: java.lang.UnsatisfiedLinkError: /home/egonw/.jnati

Bug#627495: wishlist: VOS database loading should not block booting of machine

2011-05-21 Thread Egon Willighagen
Package: virtuoso-opensource-6.1 Version: 6.1.2+dfsg1-1+b1 Severity: wishlist Right now, loading of the Virtuoso database upon booting blocks this process. It would be nicer of the boot process would simply continue when the loading is initiated but performed in the background. When the database

Bug#627161: texmaker: incorrectly picks up \input-ed files from newcommand statements

2011-05-18 Thread Egon Willighagen
Package: texmaker Version: 3.0.2-2 Severity: normal When a .tex files contains content like: \newcommand{\codeverb}[1]{\input{code/#1.verbatim}} then texmaker will show a line in the Structure windows with a loadable 'file' called "code/#1.verbatim". Of course, this being inside a \newcommand{}

Bug#626776: prey: 'No such file or directory' fail during preconfiguration

2011-05-15 Thread Egon Willighagen
Package: prey Version: 0.5.3-2 Severity: normal When installing prey it gives a 'fail' message, though installation completes: $ sudo apt-get install prey xawtv xawtv-plugin-qt tv-fonts Reading package lists... Done Building dependency tree Reading state information... Done The following e

Bug#611057: Strigi's deepgrep fails with a symbol lookup error against OPENLDAP_2.4_2

2011-01-24 Thread Egon Willighagen
Package: strigi-utils Version: 0.7.2-1+b1 When I run deepgrep on any fail, it fails with a linking error: egonw@toxbank53:~/Downloads$ ls -al Davis\ et\ al.\ CTD.\ 2011.pdf -rw-r--r-- 1 egonw egonw 5912982 Jan 14 10:06 Davis et al. CTD. 2011.pdf egonw@toxbank53:~/Downloads$ deepgrep David Davis\

Bug#585625:

2011-01-22 Thread Egon Willighagen
I think this bug might very well be what I am experiencing on my HP EliteBook 2540p too. Booting generally works well with the Squeeze stock bigmem kernel: $ dpkg -l linux-image-2.6.32-5-686-bigmem Desired=Unknown/Install/Remove/Purge/Hold | Status=Not/Inst/Conf-files/Unpacked/halF-conf/Half-inst

Bug#591100:

2011-01-13 Thread Egon Willighagen
I can reproduce the problem. Since RT-ing is a crucial part of tweeting, I would very much appreciate this bug to be fixed in the upcoming stable release. -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.deb

Bug#609652: reportbug crashes with a floating point exception

2011-01-11 Thread Egon Willighagen
name and email setting (if non-default) # realname "Egon Willighagen" email "egon.willigha...@gmail.com" # If nothing else works, remove the # at the beginning # of the following three lines: #no-cc #header "X-Debbugs-CC: egon.willigha...@gmail.com" #smtphost repor

Bug#519969: wishlist: package 1.2.0

2009-03-16 Thread Egon Willighagen
On Monday 16 March 2009 21:43:51 Daniel Leidert wrote: > Am Montag, den 16.03.2009, 15:01 +0100 schrieb Egon Willighagen: > > * libjgrapht-java that moved from main to contrib for unknown reasons > > (see #517348) > > Reasons are not "unknown": > http://bugs.debia

Bug#519969: wishlist: package 1.2.0

2009-03-16 Thread Egon Willighagen
Subject: wishlist: package 1.2.0 Package: cdk Version: 1.0.2-2 Severity: wishlist Please package 1.2.0. I am working on updating the debian/ details, but this is depends on two other issues: * libjgrapht-java that moved from main to contrib for unknown reasons (see #517348) * ant-contrib to be

Bug#485708: libcdk-java 1.2.0 depends on this package

2009-03-16 Thread Egon Willighagen
Hi there, just wanted to leave a note here that packaging libcdk-java 1.2.0 requires this package. Mike, please let me know what the state of this ITP is. Egon -- http://chem-bla-ics.blogspot.com/ -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of "

Bug#481243: wish: configuration option to allow apt-p2p to function as LAN-wide mirror/proxy

2008-11-11 Thread Egon Willighagen
Hi Chris, being rather interested in your patch, I tried to find where you added the line, but could not find it. Maybe it's because I'm running 0.1.5 and on Ubuntu, not Debian, but could you give some details (patch?) where you added that addr.startswith('192.168.') line... BTW, I'm running it o

Bug#309068: SVN is dead

2007-06-21 Thread Egon Willighagen
Hi Raphael, if you check SVN you will see that no actual code changes have happend in the last 15 months. It is as dead as the computer I type this on. Seriously, Roberto disappeared from the surface (unfortunately, I really hope he is fine). Moreover, Strigi has completely replaced it, and i

Bug#387624: texlive-doc-de: move echem.sty outside doc package

2006-09-25 Thread Egon Willighagen
On Monday 25 September 2006 18:15, Frank Küster wrote: > regarding echem.sty and other style files I wrote: > > Frank Küster <[EMAIL PROTECTED]> wrote: > > Even worse, there doesn't seem to be a license statement with the files > > on CTAN. Do you have the book? No, I don't :( I'll look around

Bug#387624: texlive-doc-de: move echem.sty outside doc package

2006-09-15 Thread Egon Willighagen
Package: texlive-doc-de Version: 2005.dfsg.1-1 Severity: wishlist There is a useful .sty file in a documentation package, but would like to see that .sty file available to latex. # dpkg -L texlive-doc-de | grep echem /usr/share/doc/texlive-doc-de/german/latex-tipps-und-tricks/echem.sty /usr/share

Bug#387425: NullPointerException in Swing BasicToolBarUI.setBorderToNonRollover

2006-09-14 Thread Egon Willighagen
forwarded 387425 http://gcc.gnu.org/bugzilla/show_bug.cgi?id=29082 quit -- CUBIC blog: http://chem-bla-ics.blogspot.com/ -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

Bug#387425: classpath: NullPointerException in Swing BasicToolBarUI.setBorderToNonRollover

2006-09-14 Thread Egon Willighagen
Package: classpath Version: 2:0.92-4 Severity: normal I ran JabRef with: jamvm -jar JabRef-2.0.1.jar which fails with the following exception: java.lang.reflect.InvocationTargetException at java.lang.reflect.Method.invokeNative(Native Method) at java.lang.reflect.Method.invoke(Method.java

Bug#387318: Native library `gconfpeer' not found

2006-09-14 Thread Egon Willighagen
found 387318 0.92-3 quit -- CUBIC blog: http://chem-bla-ics.blogspot.com/ -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

Bug#387318: libgconf.so only link

2006-09-14 Thread Egon Willighagen
$ ls -al /usr/lib/classpath/libgconfpeer.so* lrwxrwxrwx 1 root root 21 2006-09-14 07:01 /usr/lib/classpath/libgconfpeer.so -> libgconfpeer.so.0.0.0 Or, the libgconfpeer.so.0.0.0 is missing. Egon -- CUBIC blog: http://chem-bla-ics.blogspot.com/ -- To UNSUBSCRIBE, email to [EMAIL PROTECTED]

Bug#387318: Native library `gconfpeer' not found

2006-09-14 Thread Egon Willighagen
reopen 387318 quit -- CUBIC blog: http://chem-bla-ics.blogspot.com/ -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

Bug#387318: problem occurs with 0.92-3 too :(

2006-09-14 Thread Egon Willighagen
I upgraded my unstable to have 0.92-3, but I get the same error :( Details: $ dpkg -l "*classpath*" Desired=Unknown/Install/Remove/Purge/Hold | Status=Not/Installed/Config-files/Unpacked/Failed-config/Half-installed |/ Err?=(none)/Hold/Reinst-required/X=both-problems (Status,Err: uppercase=bad)

Bug#387318: Native library `gconfpeer' not found

2006-09-13 Thread Egon Willighagen
retitle 387318 Native library `gconfpeer' not found quit -- CUBIC blog: http://chem-bla-ics.blogspot.com/ -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

Bug#387302: Qt peers fail to run Jmol

2006-09-13 Thread Egon Willighagen
forwarded 387302 http://gcc.gnu.org/bugzilla/show_bug.cgi?id=29064 -- CUBIC blog: http://chem-bla-ics.blogspot.com/ -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]

Bug#387318: classpath:

2006-09-13 Thread Egon Willighagen
Package: classpath Version: 2:0.92-2 Severity: normal I ran JabRef with: jamvm -jar JabRef-2.0.1.jar which fails with the following exception: java.lang.reflect.InvocationTargetException at java.lang.reflect.Method.invokeNative(Native Method) at java.lang.reflect.Method.invoke(Method.java

Bug#387302: classpath-qtpeer: Qt peers fail to run Jmol

2006-09-13 Thread Egon Willighagen
Package: classpath Version: 2:0.92-2 Severity: normal See also the Classpath wiki. I justed the Jmol version from SVN branches/v10_9, compiled with 'ant jar' using the build.xml. I ran Jmol with: java -Dawt.toolkit=gnu.java.awt.peer.qt.QtToolkit -jar Jmol.jar $ java -version: java version "

Bug#358356: cacao: crash when using Cairo backend

2006-03-22 Thread Egon Willighagen
On Wednesday 22 March 2006 13:23, Wolfgang Baer wrote: > Egon Willighagen wrote: > Might be related to the new glib in unstable: > http://lists.debian.org/debian-devel/2006/03/msg00941.html Yes, it seems so. When I run it as suggested in the linked email, I do not get the error when r

Bug#358356: Acknowledgement (cacao: crash when using Cairo backend)

2006-03-22 Thread Egon Willighagen
Ummm... it's a classpath bug. Sorry. Though I thought I had done that, I forgot to run it with jamvm. Same error; hence a classpath bug. No idea if and how I can reassign this myself. Egon -- [EMAIL PROTECTED] PhD student on Molecular Representation in Chemometrics Radboud University Nijmegen

Bug#358356: cacao: crash when using Cairo backend

2006-03-22 Thread Egon Willighagen
Package: cacao Version: 0.95-1 Severity: normal I tried to use the cairo backend using 'cacao -Dgnu.java.awt.peer.gtk.Graphics=Graphics2D' as described in /usr/share/doc/classpath/README.Debian but it crashes like this: [EMAIL PROTECTED]: ~/var/Projects/SourceForge/Jmol/trunk/Jmol $ cacao -Dg

Bug#351551: cacao: reader.readLine() returns null while reader.ready() returns true

2006-02-05 Thread Egon Willighagen
Package: cacao Version: 0.94-1 Severity: normal Not sure wether this is a true bug, or just incompatibility with Sun JVM 1.5.0 and kaffe: When I run a CDK based test suite [1], the "OpenSource JVM Test Suite", I get a NullPointerException, because of this situation: - reader.ready() returns tr

Bug#343869: /usr/bin/statcvs script does not pick up /usr/bin/java

2005-12-18 Thread Egon Willighagen
Package: statcvs Version: 20030713-4 Severity: normal The script does not attempt to use /usr/bin/java, and the options do not include any of the Java5 series, so starting the program failed on my machine. I would say that including /usr/bin/java, or explicitely depending on kaffe should fix th

Bug#316831: java-package: [patch] support for blackdown-j2sdk1.4_1.4.2+02_amd64.deb

2005-07-03 Thread Egon Willighagen
Package: java-package Version: 0.24 Severity: wishlist Please find below a patch for support for blackdown-j2sdk1.4_1.4.2+02_amd64.deb: # diff -u blackdown-j2sdk.sh.orig blackdown-j2sdk.sh --- blackdown-j2sdk.sh.orig 2005-07-04 08:01:23.175494368 +0200 +++ blackdown-j2sdk.sh 2005-07-04 08:0

Bug#307467: openbabel: -omol outputs SDF instead of MDL Molfile

2005-05-03 Thread Egon Willighagen
Package: openbabel Version: 1.100.2-2 Severity: normal The -omol option generates a MDL SDF file, i.e. with a trailing line. A MDL Molfile does not have that, only a SDF file. Egon -- System Information: Debian Release: 3.1 Architecture: amd64 (x86_64) Kernel: Linux 2.6.10-9-amd64-k8-smp L

Bug#307313: jython: urllib.urlopen fails with error in usage of httplib

2005-05-02 Thread Egon Willighagen
Package: jython Version: 2.1.0-20 Severity: normal I tried this script in jython which failed: import urllib file = open("test.txt") line = file.readline() while (len(line) > 1) : cas = line.strip() code = cas.replace("-", "") url = "http://webbook.nist.gov/cgi/cbook.cgi

Bug#294385: link to wiki page broken for http://www.debian.org/ports/amd64/

2005-02-09 Thread Egon Willighagen
Package: www.debian.org Severity: normal On the page http://www.debian.org/ports/amd64/ there is a link to http://wiki.debian.net/index.cgi?debian-amd64, which no longer works after a recent upgrade due to change of API. There is a newer Wiki page that does work: http://wiki.debian.net/?Debi

Bug#291188: www.debian.org: ports/amd64/ mentions to be most complete after i386

2005-01-19 Thread Egon Willighagen
Package: www.debian.org Severity: normal The webpage http://www.debian.org/ports/amd64/ mentions in paragraph three "Taking the ported source packages count, debian-amd64 is the most complete port after i386, see the Buildd stats." But looking at the picture linked, powerpc is more complete too,

Bug#290641: mime type does not point to executable but to /usr/local/bin/viewmol

2005-01-15 Thread Egon Willighagen
Package: viewmol Version: 2.4.1-5 Severity: normal The current mime type registry points to an non-existing executable in /usr/local/bin # more /usr/share/applnk/Graphics/viewmol.desktop # KDE Config File [Desktop Entry] Encoding=UTF-8 Name=Viewmol Name[ru]=Viewmol MimeType=chemical/x-msi-car;che

Bug#290483: gij-3.4 suggests libgcj-awt5 but not found. Should be libgcj5-awt?

2005-01-14 Thread Egon Willighagen
Package: gij-3.4 Severity: normal gij-3.4 suggests libgcj-awt5 but not found. Should be libgcj5-awt? -- System Information: Debian Release: 3.1 Architecture: amd64 (x86_64) Kernel: Linux 2.6.8-9-amd64-k8-smp Locale: LANG=en_US, LC_CTYPE=en_US (charmap=ISO-8859-1) -- To UNSUBSCRIBE, email to