Bug#1028713: Comment

2023-02-22 Thread Andreas Tille
Hi, I've put the test suite line below (and others) into some autopkgtest and for the moment forced the build time test to pass[1] to get some package to test. I've built this and installed salmon as well as salmon-dbgsym and was running the same test as Dominik via: cp -a

Bug#1028713: Comment

2023-01-31 Thread Andreas Tille
Hi Dominik, thanks for your attempt to track this down. I'm wondering what might happen if I refresh the pufferfish code in debian/external which I tried in my last commit. Unfortunately this failed as well: https://salsa.debian.org/med-team/salmon/-/jobs/3876351 Kind regards Andreas.

Bug#1028713: Comment

2023-01-29 Thread Dominik Stadler
A stacktrace from the segmentation fault looks like follows. It triggers consistently for me with the following steps in a source-tree fakeroot debian/rules binary cd sample_data/ /tmp/salmon-1.9.0+ds1/obj-x86_64-linux-gnu/src/salmon index -t transcripts.fasta -i sample_salmon_quasi_index #0