Package: q2-quality-control Version: 2022.11.1-2 Severity: normal scipy 1.10 is now available in experimental. q2-quality-control fails debci tests using it.
We are considering uploading scipy 1.10 to unstable in order to included it in the forthcoming stable release. If we proceed with that, then this bug will become Severity: serious. The errors are ImportError: cannot import name 'PearsonRConstantInputWarning' A sample from the failing test log is ___________ ERROR collecting q2_quality_control/tests/test_filter.py ___________ ImportError while importing test module '/tmp/autopkgtest-lxc.z7g2c7_o/downtmp/autopkgtest_tmp/q2_quality_control/tests/test_filter.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) q2_quality_control/tests/test_filter.py:13: in <module> from q2_types.per_sample_sequences import ( /usr/lib/python3/dist-packages/q2_types/__init__.py:18: in <module> importlib.import_module('q2_types.multiplexed_sequences') /usr/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) /usr/lib/python3/dist-packages/q2_types/multiplexed_sequences/__init__.py:11: in <module> from ._format import (MultiplexedSingleEndBarcodeInSequenceDirFmt, /usr/lib/python3/dist-packages/q2_types/multiplexed_sequences/_format.py:11: in <module> from ..per_sample_sequences import FastqGzFormat /usr/lib/python3/dist-packages/q2_types/per_sample_sequences/__init__.py:11: in <module> from ._format import (CasavaOneEightSingleLanePerSampleDirFmt, /usr/lib/python3/dist-packages/q2_types/per_sample_sequences/_format.py:16: in <module> import skbio /usr/lib/python3/dist-packages/skbio/__init__.py:11: in <module> import skbio.io # noqa /usr/lib/python3/dist-packages/skbio/io/__init__.py:248: in <module> import_module('skbio.io.format.lsmat') /usr/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) /usr/lib/python3/dist-packages/skbio/io/format/lsmat.py:77: in <module> from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix /usr/lib/python3/dist-packages/skbio/stats/distance/__init__.py:197: in <module> from ._mantel import mantel, pwmantel /usr/lib/python3/dist-packages/skbio/stats/distance/_mantel.py:16: in <module> from scipy.stats import PearsonRConstantInputWarning E ImportError: cannot import name 'PearsonRConstantInputWarning' from 'scipy.stats' (/usr/lib/python3/dist-packages/scipy/stats/__init__.py)