Bug#1056457: python-ase's autopkg tests fail with Python 3.12
Hi Graham, On Mon, 8 Jan 2024 08:46:45 +0200 Graham Inggs wrote: However, since spglib stopped building its extension for all supported Python versions (see #1057858) testing python-ase against Python 3.12 now fails with: 531s INTERNALERROR> Traceback (most recent call last): 531s INTERNALERROR> File "/usr/lib/python3/dist-packages/spglib/spglib.py", line 41, in 531s INTERNALERROR> from spglib import _spglib as spg 531s INTERNALERROR> ImportError: cannot import name '_spglib' from partially initialized module 'spglib' (most likely due to a circular import) (/usr/lib/python3/dist-packages/spglib/__init__.py) Therefore, I let python-ase only test against the default Python version [1], and lower the severity of this bug, until either Python 3.12 is the default, or spglib builds its extension for all supported Python versions again. Maybe an alternative solution would be to only disable spglib-related test cases for Python 3.12. It seems that spglib is not an essential dependency for python-ase, thus the remaining test cases could still be ran to ensure package's integrity on Python 3.12. [1] https://salsa.debian.org/debichem-team/python-ase/-/commit/b33055fd68da81e1806e7a0f0dd65dc5b53fc3b2 Best wishes, Andrius
Bug#1056457: python-ase's autopkg tests fail with Python 3.12
Control: severity -1 important Hi s3v Thank you for all the links to the upstream commits. I have applied them, and python-ase now builds successfully (closing #1056184). However, since spglib stopped building its extension for all supported Python versions (see #1057858) testing python-ase against Python 3.12 now fails with: 531s INTERNALERROR> Traceback (most recent call last): 531s INTERNALERROR> File "/usr/lib/python3/dist-packages/spglib/spglib.py", line 41, in 531s INTERNALERROR> from spglib import _spglib as spg 531s INTERNALERROR> ImportError: cannot import name '_spglib' from partially initialized module 'spglib' (most likely due to a circular import) (/usr/lib/python3/dist-packages/spglib/__init__.py) Therefore, I let python-ase only test against the default Python version [1], and lower the severity of this bug, until either Python 3.12 is the default, or spglib builds its extension for all supported Python versions again. Regards Graham [1] https://salsa.debian.org/debichem-team/python-ase/-/commit/b33055fd68da81e1806e7a0f0dd65dc5b53fc3b2
Bug#1056457: [Debichem-devel] Bug#1056457: python-ase's autopkg tests fail with Python 3.12
Hi, On Thu, 21 Dec 2023 08:39:54 +0200 Andrius Merkys wrote: > Is there a way to ignore DeprecationWarnings, but leave them in to the > output? They are quite helpful to see, but not worth failing the build > at the time being. > You're right, deprecation outputs are useful. I've just tried by commenting "error" in ase/test/pytest.ini for stop treating warnings as errors. Outputs are in place and tests don't fail as well. = warnings summary == ... ... test_forcecurve.py::test_forcecurve /usr/lib/python3/dist-packages/dateutil/tz/tz.py:37: DeprecationWarning: datetime.datetime.utcfromtimestamp() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.datetime.fromtimestamp(timestamp, datetime.UTC). EPOCH = datetime.datetime.utcfromtimestamp(0) test_parsemath.py: 109 warnings constraints/test_parameteric_constr.py: 66 warnings fio/test_aims_io.py: 66 warnings /build/python-ase-3.22.1/.pybuild/cpython3_3.12_ase/build/ase/utils/parsemath.py:146: DeprecationWarning: ast.Num is deprecated and will be removed in Python 3.14; use ast.Constant instead if isinstance(node, ast.Num): # test_parsemath.py: 50 warnings constraints/test_parameteric_constr.py: 64 warnings fio/test_aims_io.py: 45 warnings /build/python-ase-3.22.1/.pybuild/cpython3_3.12_ase/build/ase/utils/parsemath.py:147: DeprecationWarning: Attribute n is deprecated and will be removed in Python 3.14; use value instead return node.n Thanks for maintaining python-ase!
Bug#1056457: [Debichem-devel] Bug#1056457: python-ase's autopkg tests fail with Python 3.12
Control: tags -1 + patch Hi, On 2023-12-20 20:23, s3v wrote: After applying [1][2][3] from upstream and adding "-p no:warnings": addopts = -p no:cacheprovider -p no:warnings in ase/test/pytest.ini (DeprecationWarnings from various packages make tests fail), I was able to build your package in a sid chroot environment. Kind Regards [1] https://gitlab.com/ase/ase/-/commit/9c019c1782115343014691596514eb6d351e8e17 [2] https://gitlab.com/ase/ase/-/commit/f0932b3385fea739bc737e5aec1fc92960b0550c [3] https://gitlab.com/ase/ase/-/merge_requests/3022 This is great news, thanks for caring for python-ase. It would be nice to have an upstream release with all Python 3.12 compatibility fixes, but in the meantime patches are OK. Is there a way to ignore DeprecationWarnings, but leave them in to the output? They are quite helpful to see, but not worth failing the build at the time being. Best, Andrius
Bug#1056457: python-ase's autopkg tests fail with Python 3.12
Dear Maintainer, After applying [1][2][3] from upstream and adding "-p no:warnings": addopts = -p no:cacheprovider -p no:warnings in ase/test/pytest.ini (DeprecationWarnings from various packages make tests fail), I was able to build your package in a sid chroot environment. Kind Regards [1] https://gitlab.com/ase/ase/-/commit/9c019c1782115343014691596514eb6d351e8e17 [2] https://gitlab.com/ase/ase/-/commit/f0932b3385fea739bc737e5aec1fc92960b0550c [3] https://gitlab.com/ase/ase/-/merge_requests/3022
Bug#1056457: python-ase's autopkg tests fail with Python 3.12
Package: src:python-ase
Version: 3.22.1-3
Severity: important
Tags: sid trixie
User: debian-pyt...@lists.debian.org
Usertags: python3.12
python-ase's autopkg tests fail with Python 3.12:
[...]
329s autopkgtest [18:38:29]: test command1: for py in $(py3versions -s);
do cd "$AUTOPKGTEST_TMP"; $py -m ase test; done
329s autopkgtest [18:38:29]: test command1: [---
329s usage: ase [-h] [--version] [-T]
329s
{help,info,test,gui,db,run,band-structure,build,dimensionality,eos,ulm,find,nebplot,nomad-upload,nomad-get,convert,reciprocal,completion,diff,exec}
329s...
329s ase: error: AttributeError: module 'importlib' has no attribute
'find_loader'
329s To get a full traceback, use: ase -T test ...
330s autopkgtest [18:38:30]: test command1: ---]
330s autopkgtest [18:38:30]: test command1: - - - - - - - - - - results
- - - - - - - - - -
330s command1 FAIL non-zero exit status 2
330s autopkgtest [18:38:30]: summary
330s command1 FAIL non-zero exit status 2
