Bug#493341: [Debian-med-packaging] Bug#493341: Fix for 493341 (and a couple of other fixes you might want to apply)

2008-08-03 Thread Charles Plessy
Hello Peter,

Le Sat, Aug 02, 2008 at 01:50:10PM +0100, peter green a écrit :
> 
> you might also want to add  libgd-gd2-perl to the build-depends to fix 
> the following warning
> 
> -
> WARNING
> -
>  GD.pm does not seem to be installed.

my gut feeling is that presence or absence of GD.pm does not change
things at build time, so I added `libgd-gd2-perl | libgd-gd2-noxpm-perl'
in the Recommends field of the binary package instead.


> The package also FTBFS if built twice in a row because after a build the 
> clean target prompts for user input. I this can be fixed by removing 
> unpatch from the dependencies of the clean target and adding 
> "debian/rules unpatch" to the end of the clean target.

I just replaced the patch by an equivalent mechanism instead :)


Thanks for the feedback,

-- 
Charles Plessy
Debian Med packaging team,
Tsurumi, Kanagawa, Japan



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Bug#493341: Fix for 493341 (and a couple of other fixes you might want to apply)

2008-08-02 Thread peter green

tags 493341 +patch
thanks

add bioperl to the build-depends to fix this bug.

you might also want to add  libgd-gd2-perl to the build-depends to fix 
the following warning


   -
   WARNING
   -
GD.pm does not seem to be installed.

GD is reqired to produce "sequence logos" from
information content matrices. If you need this
functionality, please visit
http://stein.cshl.org/WWW/software/GD/
for information on obtaining and installing GD.
   -

The package also FTBFS if built twice in a row because after a build the 
clean target prompts for user input. I this can be fixed by removing 
unpatch from the dependencies of the clean target and adding 
"debian/rules unpatch" to the end of the clean target.


note: while this bug was reported from a s390 buildlog it seems to be a 
general problem (it failed on every autobuiler that tried to build it). 
My testing was done on amd64.





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