Bug#846477: Status update

[Aaron M. Ucko]

Andreas Tille  writes:

> it would be really great if you could commit your current state even
> if there might be remaining issues.  I need it locally urgently.

OK, rebased and pushed.

-- 
Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org)
http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?a...@monk.mit.edu

Bug#846477: Status update

[Andreas Tille]

Hi Aaron,

On Fri, Dec 02, 2016 at 09:48:44 -0500, Aaron M. Ucko wrote:
> I have an upload mostly ready, but still have a few HTTPS-related fixes
> to take care of.  I just haven't pushed anything yet in case I need to
> rework any changes first.

I just noticed that the upload would also fix #821075 which I just
commited to Git.  Please git pull.

Thanks for your work on this

Andreas.

-- 
http://fam-tille.de

Bug#846477: Status update

[Aaron M. Ucko]

Andreas Tille  writes:

> Any help is really appreciated - even urgently appreciated since one of
> our users intends to use prokka which just says:

I have an upload mostly ready, but still have a few HTTPS-related fixes
to take care of.  I just haven't pushed anything yet in case I need to
rework any changes first.

-- 
Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org)
http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?a...@monk.mit.edu

Bug#846477: Status update (Was: ncbi-tools6: How to write a watch file with version encoded in _ftp_ directory)

[Andreas Tille]

Hi Aaron,

On Thu, Dec 01, 2016 at 03:54:12PM +0100, Andreas Tille wrote:
> Yes - but at least we do now have a working watch file that enabled me
> downloading the new upstream source.  As I wrote in another mail[1] I
> failed injecting it into the packaging Git.

I was able to solve this - new version is now in Git.

> I admit I'd really
> appreciate if you could take over from the current state of the Git
> repository since I consider you way more competent than me for the job.

I was able to fix two compule issues in the new version but now I'm
stumbling upon:

...
ar x libncbiacc.a
ld -o libncbiacc.so -shared *.o
rm -f *.o __*
rm -f *.o __*
ar x libncbicdr.a
ld -o libncbicdr.so -shared *.o
rm -f *.o __*
rm -f *.o __*
ar x libncbicn3d.a
ld -o libncbicn3d.so -shared *.o
rm -f *.o __*
rm -f *.o __*
ar x libncbicn3dOGL.a
ld -o libncbicn3dOGL.so -shared *.o
ld: cannot find *.o: No such file or directory
../make/makeshlb.unx:15: recipe for target 'libncbicn3dOGL.so' failed
make[3]: *** [libncbicn3dOGL.so] Error 1
make[3]: Leaving directory '/build/ncbi-tools6-6.1.20160908/shlib'
makenet.unx:454: recipe for target 'shlib.sgi' failed
make[2]: *** [shlib.sgi] Error 2
make[2]: Leaving directory '/build/ncbi-tools6-6.1.20160908/build'
...


Any help is really appreciated - even urgently appreciated since one of
our users intends to use prokka which just says:


...
[14:08:27] Looking for 'tbl2asn' - found /usr/bin/tbl2asn
[tbl2asn] This copy of tbl2asn is more than a year old.  Please download the 
current version.
[14:08:27] Determined tbl2asn version is 20.0
[14:08:27] Prokka needs tbl2asn 23.0 or higher. Please upgrade and try again.
...
 

While prokka is not (yet) officially packaged there might be other tools
out there requiring later versions of ncbi-tools6 as we can provide
currently.

Kind regards

   Andreas.

-- 
http://fam-tille.de