Source: canu Version: 1.5+dfsg-1 Severity: serious Tags: buster sid User: debian...@lists.debian.org Usertags: qa-ftbfs-20170807 qa-ftbfs Justification: FTBFS on amd64
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > g++ -o > /<<BUILDDIR>>/canu-1.5+dfsg/Linux-amd64/obj/overlapInCore/overlapInCore/overlapInCore-Process_String_Overlaps.o > -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 > -fdebug-prefix-map=/<<BUILDDIR>>/canu-1.5+dfsg=. -fstack-protector-strong > -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC > -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts > -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations > -finline-functions -fomit-frame-pointer -DLIBBACKTRACE > -I/<<BUILDDIR>>/canu-1.5+dfsg/src -IAS_UTL -Istores > -IoverlapInCore/liboverlap > overlapInCore/overlapInCore-Process_String_Overlaps.C > meryl/maskMers.C: In member function 'void > merMaskedSequence::loadMasking(uint32)': > meryl/maskMers.C:159:8: warning: ignoring return value of 'size_t > fread(void*, size_t, size_t, FILE*)', declared with attribute > warn_unused_result [-Wunused-result] > fread(&_numSeq, sizeof(uint32), 1, maskMersFile); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > meryl/maskMers.C:160:8: warning: ignoring return value of 'size_t > fread(void*, size_t, size_t, FILE*)', declared with attribute > warn_unused_result [-Wunused-result] > fread(&_merSize, sizeof(uint32), 1, maskMersFile); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > meryl/maskMers.C:168:8: warning: ignoring return value of 'size_t > fread(void*, size_t, size_t, FILE*)', declared with attribute > warn_unused_result [-Wunused-result] > fread( _seqLen, sizeof(uint32), _numSeq, maskMersFile); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > meryl/maskMers.C:183:12: warning: ignoring return value of 'size_t > fread(void*, size_t, size_t, FILE*)', declared with attribute > warn_unused_result [-Wunused-result] > fread(_masking[i], sizeof(char), _seqLen[i], maskMersFile); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > meryl/maskMers.C:184:12: warning: ignoring return value of 'size_t > fread(void*, size_t, size_t, FILE*)', declared with attribute > warn_unused_result [-Wunused-result] > fread(_repeatID[i], sizeof(uint32), _seqLen[i], maskMersFile); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > merTrim/merTrim.C: In member function 'bool > mertrimComputation::initializeFASTQ(mertrimGlobalData*)': > merTrim/merTrim.C:557:37: warning: 'memset' used with constant zero length > parameter; this could be due to transposed parameters > [-Wmemset-transposed-args] > memset(verifyName, 1024, 0); > ^ > merTrim/merTrim.C:558:37: warning: 'memset' used with constant zero length > parameter; this could be due to transposed parameters > [-Wmemset-transposed-args] > memset(verifySeq, allocLen, 0); // Needed, for verified reads > shorter than real reads > ^ > merTrim/merTrim.C: In member function 'void mertrimComputation::dump(char*)': > merTrim/merTrim.C:1785:26: error: format not a string literal and no format > arguments [-Werror=format-security] > fprintf(stderr, logLine); > ^ > merTrim/merTrim.C:1795:26: error: format not a string literal and no format > arguments [-Werror=format-security] > fprintf(stderr, logLine); > ^ > merTrim/merTrim.C:1816:28: error: format not a string literal and no format > arguments [-Werror=format-security] > fprintf(stderr, logLine); > ^ > merTrim/merTrim.C:1826:28: error: format not a string literal and no format > arguments [-Werror=format-security] > fprintf(stderr, logLine); > ^ > merTrim/merTrim.C:1837:26: error: format not a string literal and no format > arguments [-Werror=format-security] > fprintf(stderr, logLine); > ^ > merTrim/merTrim.C:1847:26: error: format not a string literal and no format > arguments [-Werror=format-security] > fprintf(stderr, logLine); > ^ > merTrim/merTrim.C:1857:26: error: format not a string literal and no format > arguments [-Werror=format-security] > fprintf(stderr, logLine); > ^ > merTrim/merTrim.C:1867:26: error: format not a string literal and no format > arguments [-Werror=format-security] > fprintf(stderr, logLine); > ^ > merTrim/merTrim.C:1877:26: error: format not a string literal and no format > arguments [-Werror=format-security] > fprintf(stderr, logLine); > ^ > g++ -o > /<<BUILDDIR>>/canu-1.5+dfsg/Linux-amd64/obj/overlapInCorePartition/overlapInCore/overlapInCorePartition.o > -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 > -fdebug-prefix-map=/<<BUILDDIR>>/canu-1.5+dfsg=. -fstack-protector-strong > -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC > -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts > -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations > -finline-functions -fomit-frame-pointer -DLIBBACKTRACE > -I/<<BUILDDIR>>/canu-1.5+dfsg/src -IAS_UTL -Istores > -IoverlapInCore/liboverlap overlapInCore/overlapInCorePartition.C > g++ -o > /<<BUILDDIR>>/canu-1.5+dfsg/Linux-amd64/obj/overlapConvert/overlapInCore/overlapConvert.o > -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 > -fdebug-prefix-map=/<<BUILDDIR>>/canu-1.5+dfsg=. -fstack-protector-strong > -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC > -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts > -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations > -finline-functions -fomit-frame-pointer -DLIBBACKTRACE > -I/<<BUILDDIR>>/canu-1.5+dfsg/src -IAS_UTL -Istores > -IoverlapInCore/liboverlap overlapInCore/overlapConvert.C > merTrim/merTrim.C: In member function 'bool > mertrimComputation::initializeFASTQ(mertrimGlobalData*)': > merTrim/merTrim.C:561:12: warning: ignoring return value of 'char* > fgets(char*, int, FILE*)', declared with attribute warn_unused_result > [-Wunused-result] > fgets(verifyName, 1024, g->fqVerify->file()); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > merTrim/merTrim.C:562:12: warning: ignoring return value of 'char* > fgets(char*, int, FILE*)', declared with attribute warn_unused_result > [-Wunused-result] > fgets(verifySeq, allocLen, g->fqVerify->file()); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > merTrim/merTrim.C:563:12: warning: ignoring return value of 'char* > fgets(char*, int, FILE*)', declared with attribute warn_unused_result > [-Wunused-result] > fgets(origQlt, allocLen, g->fqVerify->file()); // qv name line, > ignored > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > merTrim/merTrim.C:564:12: warning: ignoring return value of 'char* > fgets(char*, int, FILE*)', declared with attribute warn_unused_result > [-Wunused-result] > fgets(origQlt, allocLen, g->fqVerify->file()); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > merTrim/merTrim.C:572:10: warning: ignoring return value of 'char* > fgets(char*, int, FILE*)', declared with attribute warn_unused_result > [-Wunused-result] > fgets(readName, 1024, g->fqInput->file()); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > merTrim/merTrim.C:573:10: warning: ignoring return value of 'char* > fgets(char*, int, FILE*)', declared with attribute warn_unused_result > [-Wunused-result] > fgets(origSeq, allocLen, g->fqInput->file()); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > merTrim/merTrim.C:574:10: warning: ignoring return value of 'char* > fgets(char*, int, FILE*)', declared with attribute warn_unused_result > [-Wunused-result] > fgets(origQlt, allocLen, g->fqInput->file()); // qv name line, ignored > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > merTrim/merTrim.C:575:10: warning: ignoring return value of 'char* > fgets(char*, int, FILE*)', declared with attribute warn_unused_result > [-Wunused-result] > fgets(origQlt, allocLen, g->fqInput->file()); > ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > g++ -o > /<<BUILDDIR>>/canu-1.5+dfsg/Linux-amd64/obj/overlapImport/overlapInCore/overlapImport.o > -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 > -fdebug-prefix-map=/<<BUILDDIR>>/canu-1.5+dfsg=. -fstack-protector-strong > -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC > -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts > -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations > -finline-functions -fomit-frame-pointer -DLIBBACKTRACE > -I/<<BUILDDIR>>/canu-1.5+dfsg/src -IAS_UTL -Istores > -IoverlapInCore/liboverlap overlapInCore/overlapImport.C > g++ -o > /<<BUILDDIR>>/canu-1.5+dfsg/Linux-amd64/obj/overlapPair/overlapInCore/overlapPair.o > -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 > -fdebug-prefix-map=/<<BUILDDIR>>/canu-1.5+dfsg=. -fstack-protector-strong > -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC > -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts > -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations > -finline-functions -fomit-frame-pointer -DLIBBACKTRACE > -I/<<BUILDDIR>>/canu-1.5+dfsg/src -IAS_UTL -Istores -Imeryl/libleaff > -IoverlapInCore/libedlib overlapInCore/overlapPair.C > g++ -o > /<<BUILDDIR>>/canu-1.5+dfsg/Linux-amd64/obj/prefixEditDistance-matchLimitGenerate/overlapInCore/liboverlap/prefixEditDistance-matchLimitGenerate.o > -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 > -fdebug-prefix-map=/<<BUILDDIR>>/canu-1.5+dfsg=. -fstack-protector-strong > -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC > -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts > -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations > -finline-functions -fomit-frame-pointer -DLIBBACKTRACE > -I/<<BUILDDIR>>/canu-1.5+dfsg/src -IAS_UTL -Istores > overlapInCore/liboverlap/prefixEditDistance-matchLimitGenerate.C > overlapInCore/overlapPair.C:480:2: warning: #warning do we need to check for > contained too? [-Wcpp] > #warning do we need to check for contained too? > ^~~~~~~ > g++ -o > /<<BUILDDIR>>/canu-1.5+dfsg/Linux-amd64/obj/mhapConvert/mhap/mhapConvert.o -c > -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 > -fdebug-prefix-map=/<<BUILDDIR>>/canu-1.5+dfsg=. -fstack-protector-strong > -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC > -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts > -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations > -finline-functions -fomit-frame-pointer -DLIBBACKTRACE > -I/<<BUILDDIR>>/canu-1.5+dfsg/src -IAS_UTL -Istores -Imhap/liboverlap > mhap/mhapConvert.C > g++ -o > /<<BUILDDIR>>/canu-1.5+dfsg/Linux-amd64/obj/mmapConvert/minimap/mmapConvert.o > -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 > -fdebug-prefix-map=/<<BUILDDIR>>/canu-1.5+dfsg=. -fstack-protector-strong > -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC > -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts > -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations > -finline-functions -fomit-frame-pointer -DLIBBACKTRACE > -I/<<BUILDDIR>>/canu-1.5+dfsg/src -IAS_UTL -Istores -Iminimap/liboverlap > minimap/mmapConvert.C > g++ -o > /<<BUILDDIR>>/canu-1.5+dfsg/Linux-amd64/obj/filterCorrectionOverlaps/correction/filterCorrectionOverlaps.o > -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 > -fdebug-prefix-map=/<<BUILDDIR>>/canu-1.5+dfsg=. -fstack-protector-strong > -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC > -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts > -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations > -finline-functions -fomit-frame-pointer -DLIBBACKTRACE > -I/<<BUILDDIR>>/canu-1.5+dfsg/src -IAS_UTL -Istores > correction/filterCorrectionOverlaps.C > overlapInCore/overlapImport.C: In function 'int main(int, char**)': > overlapInCore/overlapImport.C:227:10: warning: ignoring return value of > 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result > [-Wunused-result] > fgets(S, 1024, in->file()); > ~~~~~^~~~~~~~~~~~~~~~~~~~~ > overlapInCore/overlapImport.C:291:12: warning: ignoring return value of > 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result > [-Wunused-result] > fgets(S, 1024, in->file()); > ~~~~~^~~~~~~~~~~~~~~~~~~~~ > g++ -o > /<<BUILDDIR>>/canu-1.5+dfsg/Linux-amd64/obj/generateCorrectionLayouts/correction/generateCorrectionLayouts.o > -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 > -fdebug-prefix-map=/<<BUILDDIR>>/canu-1.5+dfsg=. -fstack-protector-strong > -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC > -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts > -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations > -finline-functions -fomit-frame-pointer -DLIBBACKTRACE > -I/<<BUILDDIR>>/canu-1.5+dfsg/src -IAS_UTL -Istores -Iutgcns -Ifalcon_sense > correction/generateCorrectionLayouts.C > g++ -o > /<<BUILDDIR>>/canu-1.5+dfsg/Linux-amd64/obj/generateCorrectionLayouts/utgcns/stashContains.o > -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 > -fdebug-prefix-map=/<<BUILDDIR>>/canu-1.5+dfsg=. -fstack-protector-strong > -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC > -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts > -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations > -finline-functions -fomit-frame-pointer -DLIBBACKTRACE > -I/<<BUILDDIR>>/canu-1.5+dfsg/src -IAS_UTL -Istores -Iutgcns -Ifalcon_sense > utgcns/stashContains.C > g++ -o > /<<BUILDDIR>>/canu-1.5+dfsg/Linux-amd64/obj/generateCorrectionLayouts/falcon_sense/outputFalcon.o > -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 > -fdebug-prefix-map=/<<BUILDDIR>>/canu-1.5+dfsg=. -fstack-protector-strong > -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC > -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts > -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations > -finline-functions -fomit-frame-pointer -DLIBBACKTRACE > -I/<<BUILDDIR>>/canu-1.5+dfsg/src -IAS_UTL -Istores -Iutgcns -Ifalcon_sense > falcon_sense/outputFalcon.C > g++ -o > /<<BUILDDIR>>/canu-1.5+dfsg/Linux-amd64/obj/readConsensus/correction/readConsensus.o > -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 > -fdebug-prefix-map=/<<BUILDDIR>>/canu-1.5+dfsg=. -fstack-protector-strong > -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC > -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts > -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations > -finline-functions -fomit-frame-pointer -DLIBBACKTRACE > -I/<<BUILDDIR>>/canu-1.5+dfsg/src -IAS_UTL -Istores -IoverlapInCore > -Iutgcns/libNDalign -IoverlapErrorAdjustment correction/readConsensus.C > g++ -o > /<<BUILDDIR>>/canu-1.5+dfsg/Linux-amd64/obj/errorEstimate/correction/errorEstimate.o > -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 > -fdebug-prefix-map=/<<BUILDDIR>>/canu-1.5+dfsg=. -fstack-protector-strong > -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC > -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts > -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations > -finline-functions -fomit-frame-pointer -DLIBBACKTRACE > -I/<<BUILDDIR>>/canu-1.5+dfsg/src -IAS_UTL -Istores -IoverlapInCore > -Iutgcns/libNDalign -IoverlapErrorAdjustment correction/errorEstimate.C > g++ -o > /<<BUILDDIR>>/canu-1.5+dfsg/Linux-amd64/obj/createFalconSenseInputs/falcon_sense/createFalconSenseInputs.o > -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 > -fdebug-prefix-map=/<<BUILDDIR>>/canu-1.5+dfsg=. -fstack-protector-strong > -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC > -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts > -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations > -finline-functions -fomit-frame-pointer -DLIBBACKTRACE > -I/<<BUILDDIR>>/canu-1.5+dfsg/src -IAS_UTL -Istores > falcon_sense/createFalconSenseInputs.C > g++ -o > /<<BUILDDIR>>/canu-1.5+dfsg/Linux-amd64/obj/createFalconSenseInputs/falcon_sense/outputFalcon.o > -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 > -fdebug-prefix-map=/<<BUILDDIR>>/canu-1.5+dfsg=. -fstack-protector-strong > -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC > -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts > -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations > -finline-functions -fomit-frame-pointer -DLIBBACKTRACE > -I/<<BUILDDIR>>/canu-1.5+dfsg/src -IAS_UTL -Istores > falcon_sense/outputFalcon.C > g++ -o > /<<BUILDDIR>>/canu-1.5+dfsg/Linux-amd64/obj/falcon_sense/falcon_sense/falcon_sense.o > -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 > -fdebug-prefix-map=/<<BUILDDIR>>/canu-1.5+dfsg=. -fstack-protector-strong > -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC > -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts > -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations > -finline-functions -fomit-frame-pointer -DLIBBACKTRACE > -I/<<BUILDDIR>>/canu-1.5+dfsg/src -IAS_UTL -Istores -IoverlapInCore/libedlib > -Ifalcon_sense/libfalcon falcon_sense/falcon_sense.C > correction/generateCorrectionLayouts.C: In function 'tgTig* > generateLayout(gkStore*, uint64*, bool, uint32, double, double, ovOverlap*, > uint32, FILE*)': > correction/generateCorrectionLayouts.C:112:110: warning: format '%llu' > expects argument of type 'long long unsigned int', but argument 6 has type > 'uint64 {aka long unsigned int}' [-Wformat=] > ovl[oo].b_iid, ovl[oo].a_bgn(), ovl[oo].a_end(), ovlLength, > ovl[oo].erate(), maxEvidenceErate); > > ^ > correction/generateCorrectionLayouts.C:119:111: warning: format '%llu' > expects argument of type 'long long unsigned int', but argument 6 has type > 'uint64 {aka long unsigned int}' [-Wformat=] > ovl[oo].b_iid, ovl[oo].a_bgn(), ovl[oo].a_end(), ovlLength, > ovl[oo].erate(), minEvidenceLength); > > ^ > correction/generateCorrectionLayouts.C:127:119: warning: format '%llu' > expects argument of type 'long long unsigned int', but argument 6 has type > 'uint64 {aka long unsigned int}' [-Wformat=] > ovl[oo].b_iid, ovl[oo].a_bgn(), ovl[oo].a_end(), ovlLength, > ovl[oo].erate(), readScores[ovl[oo].b_iid]); > > ^ > correction/generateCorrectionLayouts.C:134:92: warning: format '%llu' expects > argument of type 'long long unsigned int', but argument 6 has type 'uint64 > {aka long unsigned int}' [-Wformat=] > ovl[oo].b_iid, ovl[oo].a_bgn(), ovl[oo].a_end(), ovlLength, > ovl[oo].erate()); > > ^ > correction/generateCorrectionLayouts.C:140:90: warning: format '%llu' expects > argument of type 'long long unsigned int', but argument 6 has type 'uint64 > {aka long unsigned int}' [-Wformat=] > ovl[oo].b_iid, ovl[oo].a_bgn(), ovl[oo].a_end(), ovlLength, > ovl[oo].erate()); > > ^ > g++ -o > /<<BUILDDIR>>/canu-1.5+dfsg/Linux-amd64/obj/trimReads/overlapBasedTrimming/trimReads.o > -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 > -fdebug-prefix-map=/<<BUILDDIR>>/canu-1.5+dfsg=. -fstack-protector-strong > -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC > -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts > -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations > -finline-functions -fomit-frame-pointer -DLIBBACKTRACE > -I/<<BUILDDIR>>/canu-1.5+dfsg/src -IAS_UTL -Istores > overlapBasedTrimming/trimReads.C > correction/generateCorrectionLayouts.C: In function 'int main(int, char**)': > correction/generateCorrectionLayouts.C:390:10: warning: ignoring return value > of 'char* fgets(char*, int, FILE*)', declared with attribute > warn_unused_result [-Wunused-result] > fgets(L, 1024, R); > ~~~~~^~~~~~~~~~~~ > correction/generateCorrectionLayouts.C:399:12: warning: ignoring return value > of 'char* fgets(char*, int, FILE*)', declared with attribute > warn_unused_result [-Wunused-result] > fgets(L, 1024, R); > ~~~~~^~~~~~~~~~~~ > cc1plus: some warnings being treated as errors > Makefile:640: recipe for target > '/<<BUILDDIR>>/canu-1.5+dfsg/Linux-amd64/obj/merTrim/merTrim/merTrim.o' failed > make[2]: *** > [/<<BUILDDIR>>/canu-1.5+dfsg/Linux-amd64/obj/merTrim/merTrim/merTrim.o] Error > 1 The full build log is available from: http://aws-logs.debian.net/2017/08/07/canu_1.5+dfsg-1_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.