Nicholas Breen writes:
> build/openmpi/bin/gpu_utils-test --gtest_death_test_style=threadsafe
succeeds, at least with OMPI_MCA_plm_rsh_agent=/bin/false (as the Debian
setup generally specifies).
> Probably no difference, but it's fast. Thanks much for the testing help.
No problem; glad to h
On Thu, Jan 18, 2018 at 05:21:48PM -0500, Aaron M. Ucko wrote:
> Mark Abraham writes:
>
> > GROMACS dev here - I expect that will let that test pass. It just needs
> > enough processes that can resolve MPI calls without deadlocking.
>
> Confirmed, setting OMPI_MCA_rmaps_base_oversubscribe=1 fixe
Mark Abraham writes:
> GROMACS dev here - I expect that will let that test pass. It just needs
> enough processes that can resolve MPI calls without deadlocking.
Confirmed, setting OMPI_MCA_rmaps_base_oversubscribe=1 fixes the "not
enough slots" error in MdrunUtilityMpiUnitTests. The GpuUtilsUn
Hi,
GROMACS dev here - I expect that will let that test pass. It just needs
enough processes that can resolve MPI calls without deadlocking.
Mark
On Thu, Jan 18, 2018 at 9:12 PM Nicholas Breen wrote:
> On Wed, Jan 17, 2018 at 11:22:27PM -0500, Aaron M. Ucko wrote:
> > The only 3.0.x version av
On Wed, Jan 17, 2018 at 11:22:27PM -0500, Aaron M. Ucko wrote:
> The only 3.0.x version available for x32 is 3.0.0-1, because newer
> versions build-depend on pmix, which in turn build-depends on pandoc,
> which is unavailable there. (I think the Haskell stack generally is.)
> With that version in
Nicholas Breen writes:
> It's probably a bug in OpenMPI instead (since the exact same tests pass on x32
> when using MPICH as the MPI implementation). I don't have an x32 system
> available for testing, but it would be very interesting to know if the tests
> pass with the 3.0.x version of OpenMP
On Sun, Jan 14, 2018 at 10:09:23PM -0500, Aaron M. Ucko wrote:
> Source: gromacs
> Version: 2018-1
> Severity: important
> Tags: upstream
> Justification: fails to build from source (but built successfully in the past)
> User: debian-...@lists.debian.org
> Usertags: x32
>
> Builds of gromacs 2018
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