Source: mustang Version: 3.2.3-2 Tags: patch upstream User: helm...@debian.org Usertags: rebootstrap
mustang uses the CPP variable for storing the C++ compiler. This variable is usually used for the C preprocessor. Thus dh_auto_build doesn't supply a cross compiler there. After renaming it to the more common CXX, mustang cross builds successfully. Please consider also renaming CPPFLAGS to CXXFLAGS in addition to applying the attached patch. Helmut
Index: mustang-3.2.3/Makefile =================================================================== --- mustang-3.2.3.orig/Makefile +++ mustang-3.2.3/Makefile @@ -11,11 +11,11 @@ BIN = $(MUSTANG)/bin #compiler options -CPP = g++ +CXX = g++ CPPFLAGS = -traditional -Wall -O3 LDFLAGS := $(LDFLAGS) .cpp.o: - $(CPP) $(CPPFLAGS) -c -o $@ $< + $(CXX) $(CPPFLAGS) -c -o $@ $< #macros OBJECTS = $(OBJ)/globals.o $(OBJ)/CmdLineParser.o $(OBJ)/distmat.o $(OBJ)/sse_RK.o \ @@ -36,86 +36,86 @@ #------------------------------------------------------------------------------ $(BIN)/mustang-3.2.3: $(OBJECTS) - $(CPP) $(CPPFLAGS) $(LDFLAGS) -o $@ $(OBJECTS) + $(CXX) $(CPPFLAGS) $(LDFLAGS) -o $@ $(OBJECTS) $(OBJ)/globals.o: $(SRC)/globals.h $(SRC)/macros.h $(SRC)/globals.cpp - $(CPP) $(CPPFLAGS) -c $(SRC)/globals.cpp -o $(OBJ)/globals.o + $(CXX) $(CPPFLAGS) -c $(SRC)/globals.cpp -o $(OBJ)/globals.o $(OBJ)/CmdLineParser.o: $(SRC)/CmdLineParser.h $(SRC)/macros.h $(SRC)/globals.h $(SRC)/de_alloc_routines.h $(SRC)/CmdLineParser_2.cpp - $(CPP) $(CPPFLAGS) -c $(SRC)/CmdLineParser_2.cpp -o $(OBJ)/CmdLineParser.o + $(CXX) $(CPPFLAGS) -c $(SRC)/CmdLineParser_2.cpp -o $(OBJ)/CmdLineParser.o $(OBJ)/pdb_ripper.o: $(SRC)/pdb_ripper.h $(SRC)/macros.h $(SRC)/globals.h $(SRC)/alloc_routines.h $(SRC)/init_routines.h $(SRC)/pdb_ripper_2.cpp - $(CPP) $(CPPFLAGS) -c $(SRC)/pdb_ripper_2.cpp -o $(OBJ)/pdb_ripper.o + $(CXX) $(CPPFLAGS) -c $(SRC)/pdb_ripper_2.cpp -o $(OBJ)/pdb_ripper.o $(OBJ)/read_structures.o: $(SRC)/read_structures.h $(SRC)/macros.h $(SRC)/globals.h $(SRC)/pdb_ripper.h $(SRC)/alloc_routines.h $(SRC)/init_routines.h $(SRC)/de_alloc_routines.h $(SRC)/read_structures.cpp - $(CPP) $(CPPFLAGS) -c $(SRC)/read_structures.cpp -o $(OBJ)/read_structures.o + $(CXX) $(CPPFLAGS) -c $(SRC)/read_structures.cpp -o $(OBJ)/read_structures.o $(OBJ)/3D_manip_functions.o: $(SRC)/3D_manip_functions.h $(SRC)/3D_manip_functions.cpp - $(CPP) $(CPPFLAGS) -c $(SRC)/3D_manip_functions.cpp -o $(OBJ)/3D_manip_functions.o + $(CXX) $(CPPFLAGS) -c $(SRC)/3D_manip_functions.cpp -o $(OBJ)/3D_manip_functions.o $(OBJ)/distmat.o: $(SRC)/macros.h $(SRC)/globals.h $(SRC)/distmat.h $(SRC)/distmat.cpp - $(CPP) $(CPPFLAGS) -c $(SRC)/distmat.cpp -o $(OBJ)/distmat.o + $(CXX) $(CPPFLAGS) -c $(SRC)/distmat.cpp -o $(OBJ)/distmat.o $(OBJ)/sse_RK.o: $(SRC)/macros.h $(SRC)/globals.h $(SRC)/sse_RK.h $(SRC)/sse_RK.cpp - $(CPP) $(CPPFLAGS) -c $(SRC)/sse_RK.cpp -o $(OBJ)/sse_RK.o + $(CXX) $(CPPFLAGS) -c $(SRC)/sse_RK.cpp -o $(OBJ)/sse_RK.o $(OBJ)/primary_lib_gen.o: $(SRC)/macros.h $(SRC)/primary_lib_gen.h $(SRC)/globals.h \ $(SRC)/pairwise_global_structalgn.h $(SRC)/primary_lib_gen.cpp \ $(SRC)/merge_global_local_libs.h - $(CPP) $(CPPFLAGS) -c $(SRC)/primary_lib_gen.cpp -o $(OBJ)/primary_lib_gen.o + $(CXX) $(CPPFLAGS) -c $(SRC)/primary_lib_gen.cpp -o $(OBJ)/primary_lib_gen.o $(OBJ)/pairwise_global_structalgn.o: $(SRC)/macros.h $(SRC)/globals.h $(SRC)/pairwise_global_structalgn.h \ $(SRC)/ew.h $(SRC)/refine_pairalgn.h \ $(SRC)/pairwise_global_structalgn.cpp - $(CPP) $(CPPFLAGS) -c $(SRC)/pairwise_global_structalgn.cpp -o $(OBJ)/pairwise_global_structalgn.o + $(CXX) $(CPPFLAGS) -c $(SRC)/pairwise_global_structalgn.cpp -o $(OBJ)/pairwise_global_structalgn.o $(OBJ)/refine_pairalgn.o: $(SRC)/macros.h $(SRC)/globals.h $(SRC)/refine_pairalgn.h \ $(SRC)/de_alloc_routines.h $(SRC)/superpose_2.h \ $(SRC)/refine_pairalgn_2.cpp - $(CPP) $(CPPFLAGS) -c $(SRC)/refine_pairalgn_2.cpp -o $(OBJ)/refine_pairalgn.o + $(CXX) $(CPPFLAGS) -c $(SRC)/refine_pairalgn_2.cpp -o $(OBJ)/refine_pairalgn.o $(OBJ)/superpose_2.o: $(SRC)/jacobi.h $(SRC)/macros.h $(SRC)/superpose_2.h $(SRC)/superpose_2.cpp - $(CPP) $(CPPFLAGS) -c $(SRC)/superpose_2.cpp -o $(OBJ)/superpose_2.o + $(CXX) $(CPPFLAGS) -c $(SRC)/superpose_2.cpp -o $(OBJ)/superpose_2.o $(OBJ)/superpose_weightedRMS.o: $(SRC)/jacobi.h $(SRC)/macros.h $(SRC)/superpose_weightedRMS.h $(SRC)/superpose_weightedRMS.cpp - $(CPP) $(CPPFLAGS) -c $(SRC)/superpose_weightedRMS.cpp -o $(OBJ)/superpose_weightedRMS.o + $(CXX) $(CPPFLAGS) -c $(SRC)/superpose_weightedRMS.cpp -o $(OBJ)/superpose_weightedRMS.o $(OBJ)/jacobi.o: $(SRC)/jacobi.h $(SRC)/jacobi.cpp - $(CPP) $(CPPFLAGS) -c $(SRC)/jacobi.cpp -o $(OBJ)/jacobi.o + $(CXX) $(CPPFLAGS) -c $(SRC)/jacobi.cpp -o $(OBJ)/jacobi.o $(OBJ)/ew.o: $(SRC)/globals.h $(SRC)/ew.h $(SRC)/superpose_2.h $(SRC)/superpose_weightedRMS.h \ $(SRC)/ew_2.cpp - $(CPP) $(CPPFLAGS) -c $(SRC)/ew_2.cpp -o $(OBJ)/ew.o + $(CXX) $(CPPFLAGS) -c $(SRC)/ew_2.cpp -o $(OBJ)/ew.o $(OBJ)/merge_global_local_libs.o: $(SRC)/merge_global_local_libs.h $(SRC)/macros.h $(SRC)/globals.h \ $(SRC)/merge_global_local_libs.cpp - $(CPP) $(CPPFLAGS) -c $(SRC)/merge_global_local_libs.cpp -o $(OBJ)/merge_global_local_libs.o + $(CXX) $(CPPFLAGS) -c $(SRC)/merge_global_local_libs.cpp -o $(OBJ)/merge_global_local_libs.o $(OBJ)/extended_lib_gen.o: $(SRC)/extended_lib_gen.h $(SRC)/globals.h $(SRC)/macros.h $(SRC)/extended_lib_gen_3.cpp - $(CPP) $(CPPFLAGS) -c $(SRC)/extended_lib_gen_3.cpp -o $(OBJ)/extended_lib_gen.o + $(CXX) $(CPPFLAGS) -c $(SRC)/extended_lib_gen_3.cpp -o $(OBJ)/extended_lib_gen.o $(OBJ)/progress_align.o: $(SRC)/progress_align.h $(SRC)/globals.h $(SRC)/macros.h \ $(SRC)/neighbour_joining.h $(SRC)/progress_align_3.cpp - $(CPP) $(CPPFLAGS) -c $(SRC)/progress_align_3.cpp -o $(OBJ)/progress_align.o + $(CXX) $(CPPFLAGS) -c $(SRC)/progress_align_3.cpp -o $(OBJ)/progress_align.o $(OBJ)/neighbour_joining.o: $(SRC)/globals.h $(SRC)/neighbour_joining.h $(SRC)/neighbour_joining.cpp - $(CPP) $(CPPFLAGS) -c $(SRC)/neighbour_joining.cpp -o $(OBJ)/neighbour_joining.o + $(CXX) $(CPPFLAGS) -c $(SRC)/neighbour_joining.cpp -o $(OBJ)/neighbour_joining.o $(OBJ)/upgma.o: $(SRC)/globals.h $(SRC)/upgma.h $(SRC)/upgma.cpp - $(CPP) $(CPPFLAGS) -c $(SRC)/upgma.cpp -o $(OBJ)/upgma.o + $(CXX) $(CPPFLAGS) -c $(SRC)/upgma.cpp -o $(OBJ)/upgma.o $(OBJ)/superpose_on_core.o: $(SRC)/superpose_on_core.h $(SRC)/superpose_2.h $(SRC)/macros.h $(SRC)/globals.h $(SRC)/alloc_routines.h $(SRC)/init_routines.h $(SRC)/de_alloc_routines.h $(SRC)/read_structures.h $(SRC)/superpose_on_core_2.cpp - $(CPP) $(CPPFLAGS) -c $(SRC)/superpose_on_core_2.cpp -o $(OBJ)/superpose_on_core.o + $(CXX) $(CPPFLAGS) -c $(SRC)/superpose_on_core_2.cpp -o $(OBJ)/superpose_on_core.o $(OBJ)/multiple_superposition.o: $(SRC)/multiple_superposition.h $(SRC)/jacobi.h $(SRC)/alloc_routines.h $(SRC)/multiple_superposition.cpp - $(CPP) $(CPPFLAGS) -c $(SRC)/multiple_superposition.cpp -o $(OBJ)/multiple_superposition.o + $(CXX) $(CPPFLAGS) -c $(SRC)/multiple_superposition.cpp -o $(OBJ)/multiple_superposition.o $(OBJ)/output_algn.o: $(SRC)/output_algn.h $(SRC)/macros.h $(SRC)/globals.h $(SRC)/output_algn.cpp - $(CPP) $(CPPFLAGS) -c $(SRC)/output_algn.cpp -o $(OBJ)/output_algn.o + $(CXX) $(CPPFLAGS) -c $(SRC)/output_algn.cpp -o $(OBJ)/output_algn.o $(OBJ)/main.o: $(SRC)/macros.h $(SRC)/globals.h $(SRC)/distmat.h $(SRC)/sse_RK.h $(SRC)/primary_lib_gen.h $(SRC)/main.cpp - $(CPP) $(CPPFLAGS) -c $(SRC)/main.cpp -o $(OBJ)/main.o + $(CXX) $(CPPFLAGS) -c $(SRC)/main.cpp -o $(OBJ)/main.o #------------------------------------------------------------------------------ clean:
