Package: src:lmfit-py Version: 0.9.11+dfsg-1 Severity: serious Tags: ftbfs patch
Hello Andreas et al. I tried to build this package in buster but it failed: -------------------------------------------------------------------------------- [...] debian/rules build-indep dh build-indep --with python2,python3,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -i -O--buildsystem=pybuild dh_autoreconf -i -O--buildsystem=pybuild dh_auto_configure -i -O--buildsystem=pybuild I: pybuild base:217: python2.7 setup.py config running config I: pybuild base:217: python3.7 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/<<BUILDDIR>>/lmfit-py-0.9.11+dfsg' dh_auto_build I: pybuild base:217: /usr/bin/python setup.py build running build running build_py creating /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build/lmfit copying lmfit/lineshapes.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build/lmfit copying lmfit/models.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build/lmfit copying lmfit/jsonutils.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build/lmfit copying lmfit/__init__.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build/lmfit copying lmfit/printfuncs.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build/lmfit copying lmfit/_ampgo.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build/lmfit copying lmfit/model.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build/lmfit copying lmfit/minimizer.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build/lmfit copying lmfit/parameter.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build/lmfit copying lmfit/confidence.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build/lmfit copying lmfit/_version.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build/lmfit creating /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build/lmfit/ui copying lmfit/ui/__init__.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build/lmfit/ui copying lmfit/ui/ipy_fitter.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build/lmfit/ui copying lmfit/ui/basefitter.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build/lmfit/ui UPDATING /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build/lmfit/_version.py set /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build/lmfit/_version.py to '0.9.11' I: pybuild pybuild:295: cp -r NIST_STRD /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_py creating /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython3_3.7_lmfit/build/lmfit copying lmfit/lineshapes.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython3_3.7_lmfit/build/lmfit copying lmfit/models.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython3_3.7_lmfit/build/lmfit copying lmfit/jsonutils.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython3_3.7_lmfit/build/lmfit copying lmfit/__init__.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython3_3.7_lmfit/build/lmfit copying lmfit/printfuncs.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython3_3.7_lmfit/build/lmfit copying lmfit/_ampgo.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython3_3.7_lmfit/build/lmfit copying lmfit/model.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython3_3.7_lmfit/build/lmfit copying lmfit/minimizer.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython3_3.7_lmfit/build/lmfit copying lmfit/parameter.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython3_3.7_lmfit/build/lmfit copying lmfit/confidence.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython3_3.7_lmfit/build/lmfit copying lmfit/_version.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython3_3.7_lmfit/build/lmfit creating /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython3_3.7_lmfit/build/lmfit/ui copying lmfit/ui/__init__.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython3_3.7_lmfit/build/lmfit/ui copying lmfit/ui/ipy_fitter.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython3_3.7_lmfit/build/lmfit/ui copying lmfit/ui/basefitter.py -> /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython3_3.7_lmfit/build/lmfit/ui UPDATING /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython3_3.7_lmfit/build/lmfit/_version.py set /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython3_3.7_lmfit/build/lmfit/_version.py to '0.9.11' I: pybuild pybuild:295: cp -r NIST_STRD /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython3_3.7_lmfit/build PYTHONPATH=. http_proxy='localhost' sphinx-build -N -bhtml doc/ build/html # HTML generator Running Sphinx v1.7.9 making output directory... loading pickled environment... not yet created loading intersphinx inventory from https://docs.python.org/2/objects.inv... loading intersphinx inventory from https://docs.scipy.org/doc/numpy/objects.inv... loading intersphinx inventory from https://docs.scipy.org/doc/scipy/reference/objects.inv... building [mo]: targets for 0 po files that are out of date building [html]: targets for 14 source files that are out of date updating environment: 14 added, 0 changed, 0 removed reading sources... [ 7%] bounds reading sources... [ 14%] builtin_models reading sources... [ 21%] confidence reading sources... [ 28%] constraints reading sources... [ 35%] contents reading sources... [ 42%] faq reading sources... [ 50%] fitting reading sources... [ 57%] index reading sources... [ 64%] installation reading sources... [ 71%] intro reading sources... [ 78%] model reading sources... [ 85%] parameters reading sources... [ 92%] support reading sources... [100%] whatsnew looking for now-outdated files... none found pickling environment... done checking consistency... /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/doc/contents.rst: WARNING: document isn't included in any toctree done preparing documents... done writing output... [ 7%] bounds writing output... [ 14%] builtin_models writing output... [ 21%] confidence writing output... [ 28%] constraints writing output... [ 35%] contents writing output... [ 42%] faq writing output... [ 50%] fitting writing output... [ 57%] index writing output... [ 64%] installation writing output... [ 71%] intro writing output... [ 78%] model writing output... [ 85%] parameters writing output... [ 92%] support writing output... [100%] whatsnew generating indices... genindex writing additional pages... search copying images... [ 5%] _images/models_peak1.png copying images... [ 10%] _images/models_peak2.png copying images... [ 15%] _images/models_peak3.png copying images... [ 21%] _images/models_peak4.png copying images... [ 26%] _images/models_stepfit.png copying images... [ 31%] _images/models_nistgauss.png copying images... [ 36%] _images/models_nistgauss2.png copying images... [ 42%] _images/conf_interval1.png copying images... [ 47%] _images/conf_interval1a.png copying images... [ 52%] _images/conf_interval2.png copying images... [ 57%] _images/emcee_corner.png copying images... [ 63%] _images/emcee_dbl_exp.png copying images... [ 68%] _images/emcee_dbl_exp2.png copying images... [ 73%] _images/model_fit1.png copying images... [ 78%] _images/model_fit4.png copying images... [ 84%] _images/model_fit2.png copying images... [ 89%] _images/model_fit2a.png copying images... [ 94%] _images/model_fit3a.png copying images... [100%] _images/model_fit3b.png copying static files... done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 1 warnings. The HTML pages are in build/html. make[1]: Leaving directory '/<<BUILDDIR>>/lmfit-py-0.9.11+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/<<BUILDDIR>>/lmfit-py-0.9.11+dfsg' find .pybuild -name build -type d -exec ln -s /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/examples \{\} \; dh_auto_test I: pybuild base:217: cd /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build; python2.7 -m nose -v tests test_1variable.test_1var ... ok test_NIST_Strd.test_Bennett5 ... ok test_NIST_Strd.test_BoxBOD ... ok test_NIST_Strd.test_Chwirut1 ... ok test_NIST_Strd.test_Chwirut2 ... ok test_NIST_Strd.test_DanWood ... ok test_NIST_Strd.test_ENSO ... ok test_NIST_Strd.test_Eckerle4 ... ok test_NIST_Strd.test_Gauss1 ... ok test_NIST_Strd.test_Gauss2 ... ok test_NIST_Strd.test_Gauss3 ... ok test_NIST_Strd.test_Hahn1 ... ok test_NIST_Strd.test_Kirby2 ... ok test_NIST_Strd.test_Lanczos1 ... ok test_NIST_Strd.test_Lanczos2 ... ok test_NIST_Strd.test_Lanczos3 ... ok test_NIST_Strd.test_MGH09 ... ok test_NIST_Strd.test_MGH10 ... ok test_NIST_Strd.test_MGH17 ... ok test_NIST_Strd.test_Misra1a ... ok test_NIST_Strd.test_Misra1b ... ok test_NIST_Strd.test_Misra1c ... ok test_NIST_Strd.test_Misra1d ... ok test_NIST_Strd.test_Nelson ... ok test_NIST_Strd.test_Rat42 ... ok test_NIST_Strd.test_Rat43 ... ok test_NIST_Strd.test_Roszman1 ... ok test_NIST_Strd.test_Thurber ... ok test_algebraic_constraint.test_constraints1 ... ok add a user-defined function to symbol table ... ok test a constraint with simple function call ... ok test_algebraic_constraint2.test_constraints ... ok Test AMPGO algorithm on Alpine02 function. ... ok Test AMPGO algorithm on Alpine02 function. ... ok test_basicfit.test_basic ... ok Test basinhopping in lmfit versus scipy. ... lmfit/minimizer.py:335: RuntimeWarning: divide by zero encountered in double_scalars self.redchi = self.chisqr / self.nfree ok Test basinhopping in lmfit versus scipy. ... ok Test basinhopping on Alpine02 function. ... ok test_bounded_jacobian.test_bounded_jacobian ... ok test_bounds.test_bounds ... ok test_brute_method.test_brute_lmfit_vs_scipy ... ok test_brute_method.test_brute ... ok test_confidence.test_confidence1 ... ok test_confidence.test_confidence2 ... ok test_copy_params.test_copy_params ... ok test_covariance_matrix.test_bounded_parameters ... FAIL test_covariance_matrix.test_bounds_expression ... ok test_default_kws.test_default_inputs_gauss ... ok test_height_fwhm.test_peak_like ... ok test_itercb.test_itercb ... ok test_least_squares.test_bounds ... ok test_manypeaks_speed.test_manypeaks_speed ... ok test_minimizer.test_scalar_minimize_neg_value ... ok test_aic (test_model.TestComplexConstant) ... ok test_bic (test_model.TestComplexConstant) ... ok test_data_alignment (test_model.TestComplexConstant) ... ok test_explicit_independent_vars (test_model.TestComplexConstant) ... ok test_fit (test_model.TestComplexConstant) ... ok test_fit_with_weights (test_model.TestComplexConstant) ... ok test_result_attributes (test_model.TestComplexConstant) ... ok test_result_eval (test_model.TestComplexConstant) ... ok test_result_eval_custom_x (test_model.TestComplexConstant) ... ok test_result_report (test_model.TestComplexConstant) ... ok test_aic (test_model.TestConstant) ... ok test_bic (test_model.TestConstant) ... ok test_data_alignment (test_model.TestConstant) ... ok test_explicit_independent_vars (test_model.TestConstant) ... SKIP: ConstantModel has not independent_vars. test_fit (test_model.TestConstant) ... ok test_fit_with_weights (test_model.TestConstant) ... ok test_result_attributes (test_model.TestConstant) ... ok test_result_eval (test_model.TestConstant) ... ok test_result_eval_custom_x (test_model.TestConstant) ... SKIP: ConstantModel has not independent_vars. test_result_report (test_model.TestConstant) ... ok test_aic (test_model.TestExponential) ... ok test_bic (test_model.TestExponential) ... ok test_data_alignment (test_model.TestExponential) ... ok test_explicit_independent_vars (test_model.TestExponential) ... ok test_fit (test_model.TestExponential) ... ok test_fit_with_weights (test_model.TestExponential) ... ok test_result_attributes (test_model.TestExponential) ... ok test_result_eval (test_model.TestExponential) ... ok test_result_eval_custom_x (test_model.TestExponential) ... ok test_result_report (test_model.TestExponential) ... ok test_aic (test_model.TestExpression) ... ok test_bic (test_model.TestExpression) ... ok test_composite_with_expression (test_model.TestExpression) ... ok test_data_alignment (test_model.TestExpression) ... ok test_explicit_independent_vars (test_model.TestExpression) ... ok test_fit (test_model.TestExpression) ... ok test_fit_with_weights (test_model.TestExpression) ... ok test_result_attributes (test_model.TestExpression) ... ok test_result_eval (test_model.TestExpression) ... ok test_result_eval_custom_x (test_model.TestExpression) ... ok test_result_report (test_model.TestExpression) ... ok test_aic (test_model.TestLinear) ... ok test_bic (test_model.TestLinear) ... ok test_data_alignment (test_model.TestLinear) ... ok test_explicit_independent_vars (test_model.TestLinear) ... ok test_fit (test_model.TestLinear) ... ok test_fit_with_weights (test_model.TestLinear) ... ok test_result_attributes (test_model.TestLinear) ... ok test_result_eval (test_model.TestLinear) ... ok test_result_eval_custom_x (test_model.TestLinear) ... ok test_result_report (test_model.TestLinear) ... ok test_aic (test_model.TestParabolic) ... ok test_bic (test_model.TestParabolic) ... ok test_data_alignment (test_model.TestParabolic) ... ok test_explicit_independent_vars (test_model.TestParabolic) ... ok test_fit (test_model.TestParabolic) ... ok test_fit_with_weights (test_model.TestParabolic) ... ok test_result_attributes (test_model.TestParabolic) ... ok test_result_eval (test_model.TestParabolic) ... ok test_result_eval_custom_x (test_model.TestParabolic) ... ok test_result_report (test_model.TestParabolic) ... ok test_aic (test_model.TestPolynomialOrder2) ... ok test_bic (test_model.TestPolynomialOrder2) ... ok test_data_alignment (test_model.TestPolynomialOrder2) ... ok test_explicit_independent_vars (test_model.TestPolynomialOrder2) ... ok test_fit (test_model.TestPolynomialOrder2) ... ok test_fit_with_weights (test_model.TestPolynomialOrder2) ... ok test_result_attributes (test_model.TestPolynomialOrder2) ... ok test_result_eval (test_model.TestPolynomialOrder2) ... ok test_result_eval_custom_x (test_model.TestPolynomialOrder2) ... ok test_result_report (test_model.TestPolynomialOrder2) ... ok test_aic (test_model.TestPolynomialOrder3) ... ok test_bic (test_model.TestPolynomialOrder3) ... ok test_data_alignment (test_model.TestPolynomialOrder3) ... ok test_explicit_independent_vars (test_model.TestPolynomialOrder3) ... ok test_fit (test_model.TestPolynomialOrder3) ... ok test_fit_with_weights (test_model.TestPolynomialOrder3) ... ok test_result_attributes (test_model.TestPolynomialOrder3) ... ok test_result_eval (test_model.TestPolynomialOrder3) ... ok test_result_eval_custom_x (test_model.TestPolynomialOrder3) ... ok test_result_report (test_model.TestPolynomialOrder3) ... ok test_aic (test_model.TestPowerlaw) ... ok test_bic (test_model.TestPowerlaw) ... ok test_data_alignment (test_model.TestPowerlaw) ... ok test_explicit_independent_vars (test_model.TestPowerlaw) ... ok test_fit (test_model.TestPowerlaw) ... ok test_fit_with_weights (test_model.TestPowerlaw) ... ok test_result_attributes (test_model.TestPowerlaw) ... ok test_result_eval (test_model.TestPowerlaw) ... ok test_result_eval_custom_x (test_model.TestPowerlaw) ... ok test_result_report (test_model.TestPowerlaw) ... ok test_aic (test_model.TestUserDefiniedModel) ... ok test_bic (test_model.TestUserDefiniedModel) ... ok test_bounding (test_model.TestUserDefiniedModel) ... ok should pass! ... ok test_composite_has_bestvalues (test_model.TestUserDefiniedModel) ... ok Smoke test for composite model fitting with expr constraints. ... ok test_data_alignment (test_model.TestUserDefiniedModel) ... ok test_eval_components (test_model.TestUserDefiniedModel) ... ok test_explicit_independent_vars (test_model.TestUserDefiniedModel) ... ok test_extra_param_issues_warning (test_model.TestUserDefiniedModel) ... ok test_fit (test_model.TestUserDefiniedModel) ... ok test_fit_with_weights (test_model.TestUserDefiniedModel) ... ok test_hints_for_peakmodels (test_model.TestUserDefiniedModel) ... ok test_hints_in_composite_models (test_model.TestUserDefiniedModel) ... ok test_lists_become_arrays (test_model.TestUserDefiniedModel) ... ok test_missing_independent_variable_raises_error (test_model.TestUserDefiniedModel) ... ok test_missing_param_raises_error (test_model.TestUserDefiniedModel) ... ok test_model_name (test_model.TestUserDefiniedModel) ... ok test_model_nan_policy (test_model.TestUserDefiniedModel) ... ok test_model_with_prefix (test_model.TestUserDefiniedModel) ... ok test_param_hint_explicit_value (test_model.TestUserDefiniedModel) ... ok test_result_attributes (test_model.TestUserDefiniedModel) ... ok test_result_eval (test_model.TestUserDefiniedModel) ... ok test_result_eval_custom_x (test_model.TestUserDefiniedModel) ... ok test_result_report (test_model.TestUserDefiniedModel) ... ok test_sum_composite_models (test_model.TestUserDefiniedModel) ... ok test_sum_of_two_gaussians (test_model.TestUserDefiniedModel) ... ok test_user_defined_gaussian_plus_constant (test_model.TestUserDefiniedModel) ... ok test_vary_false (test_model.TestUserDefiniedModel) ... ok test_weird_param_hints (test_model.TestUserDefiniedModel) ... ok test_model_uncertainties.test_linear_constant_intercept ... ok test_model_uncertainties.test_linear_constant_slope ... ok test that dely increases as sigma increases ... ok test that dely increases as expected with changing noise level ... ok test_multidatasets.test_multidatasets ... ok test_diffev_bounds_check (test_nose.CommonMinimizerTest) ... ok test_emcee (test_nose.CommonMinimizerTest) ... ok test_emcee_PT (test_nose.CommonMinimizerTest) ... ok test_emcee_PT_output (test_nose.CommonMinimizerTest) ... ok test_emcee_bounds_length (test_nose.CommonMinimizerTest) ... ok test_emcee_float (test_nose.CommonMinimizerTest) ... ok test_emcee_init_with_chain (test_nose.CommonMinimizerTest) ... ok test_emcee_lnpost (test_nose.CommonMinimizerTest) ... ok test_emcee_multiprocessing (test_nose.CommonMinimizerTest) ... ok test_emcee_output (test_nose.CommonMinimizerTest) ... ok test_emcee_partial_bounds (test_nose.CommonMinimizerTest) ... ok test_emcee_reuse_sampler (test_nose.CommonMinimizerTest) ... ok test_emcee_seed (test_nose.CommonMinimizerTest) ... ok test_nan_policy (test_nose.CommonMinimizerTest) ... capi_return is NULL Call-back cb_calcfc_in__cobyla__user__routines failed. ok test_nan_policy_function (test_nose.CommonMinimizerTest) ... ok test_scalar_minimizers (test_nose.CommonMinimizerTest) ... ok test_nose.test_simple ... ok test_nose.test_lbfgsb ... ok test_nose.test_derive ... ok test_nose.test_peakfit ... ok test_nose.test_scalar_minimize_has_no_uncertainties ... ok test_nose.test_scalar_minimize_reduce_fcn ... ok test_nose.test_multidimensional_fit_GH205 ... ok test of ufloat from uncertainties ... ok test_add_many_params (test_parameters.TestParameters) ... ok test_copy (test_parameters.TestParameters) ... ok test_copy_function (test_parameters.TestParameters) ... ok test_deepcopy (test_parameters.TestParameters) ... ok test_dumps_loads_parameters (test_parameters.TestParameters) ... ok test_expr_and_constraints_GH265 (test_parameters.TestParameters) ... ok test_expr_was_evaluated (test_parameters.TestParameters) ... ok test an expression with bounds, without value ... ok test_isclose (test_parameters.TestParameters) ... ok test_pickle_parameter (test_parameters.TestParameters) ... ok test_pickle_parameters (test_parameters.TestParameters) ... ok test_set_symtable (test_parameters.TestParameters) ... ok test_params_set.test_param_set ... ok test_saveload.test_saveload_model_withdill ... ok test_saveload.test_saveload_model_nodill ... ok test_saveload.test_saveload_modelresult_withdill ... ok test_saveload.test_saveload_modelresult_nodill ... ok test_stepmodel.test_stepmodel_linear ... ok test_stepmodel.test_stepmodel_erf ... ok ====================================================================== FAIL: test_covariance_matrix.test_bounded_parameters ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build/tests/test_covariance_matrix.py", line 66, in test_bounded_parameters assert_allclose(result.covar, cov_x, rtol=1e-6) File "/usr/lib/python2.7/dist-packages/numpy/testing/_private/utils.py", line 1459, in assert_allclose verbose=verbose, header=header, equal_nan=equal_nan) File "/usr/lib/python2.7/dist-packages/numpy/testing/_private/utils.py", line 796, in assert_array_compare raise AssertionError(msg) AssertionError: Not equal to tolerance rtol=1e-06, atol=0 (mismatch 25.0%) x: array([[ 1.424282e-03, 9.453960e-06, -4.339978e-05, 1.073620e-05], [ 9.453960e-06, 1.841104e-07, -2.905886e-07, 7.191060e-08], [-4.339978e-05, -2.905886e-07, 9.534268e-05, -2.377502e-05], [ 1.073620e-05, 7.191060e-08, -2.377502e-05, 9.609517e-06]]) y: array([[ 1.424282e-03, 9.453960e-06, -4.339979e-05, 1.073621e-05], [ 9.453960e-06, 1.841104e-07, -2.905890e-07, 7.191072e-08], [-4.339979e-05, -2.905890e-07, 9.534270e-05, -2.377504e-05], [ 1.073621e-05, 7.191072e-08, -2.377504e-05, 9.609523e-06]]) ---------------------------------------------------------------------- Ran 222 tests in 30.570s FAILED (SKIP=2, failures=1) E: pybuild pybuild:338: test: plugin distutils failed with: exit code=1: cd /<<BUILDDIR>>/lmfit-py-0.9.11+dfsg/.pybuild/cpython2_2.7_lmfit/build; python2.7 -m nose -v tests dh_auto_test: pybuild --test --test-nose -i python{version} -p 2.7 returned exit code 13 make[1]: *** [debian/rules:35: override_dh_auto_test] Error 25 make[1]: Leaving directory '/<<BUILDDIR>>/lmfit-py-0.9.11+dfsg' make: *** [debian/rules:21: build-indep] Error 2 dpkg-buildpackage: error: debian/rules build-indep subprocess returned exit status 2 -------------------------------------------------------------------------------- The build was made in my autobuilder with "dpkg-buildpackage -A" and similar randomness happens here: https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/lmfit-py.html If this is really a bug in one of the build-depends, please use reassign and affects, so that this is still visible in the BTS web page for this package. On the other hand, if this is a bug in the package itself, and a failure of this test does not really mean that the package is misbuilt or it's not working properly (i.e. flaky test which may not be trusted), then I suggest that the test is simply disabled, as in the patch below. (Warning: the patch is untested). Note: Normally I don't want to use serious severity for things which fail randomly with low probability, but the failure rates I get in this particular case are above 70% and honestly I don't think it would be fair to say that this package "builds from source". If for whatever reason you could not reproduce this easily, please contact me privately and I will gladly offer ssh access to a system where this happens a lot. Thanks. --- a/tests/test_covariance_matrix.py +++ b/tests/test_covariance_matrix.py @@ -26,6 +26,7 @@ def check_paras(para_fit, para_real, sig=3): def test_bounded_parameters(): + return # create data to be fitted np.random.seed(1) x = np.linspace(0, 15, 301)
