Bug#945454: elastix: FTBFS with current opencv and gdcm

[Emmanuel Promayon]

Dear Steve,

Thank you for this bug report.

After checking the build log you provided, I found the same CMake error 
message as in #945453

https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=945453

Therefore I think all packages that depends on insight-toolkit will fail 
the same way due to bug #944636

https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=944636

for which there is a fix waiting (if I understood correctly).

Kind regards,
Emmanuel



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Bug#945454: elastix: FTBFS with current opencv and gdcm

[Steve Langasek]

Source: elastix
Version: 4.9.0-1
Severity: serious
User: ubuntu-de...@lists.ubuntu.com
Usertags: origin-ubuntu focal

Dear maintainers,

The elastix package is not buildable in unstable with the current opencv and
gdcm:

[...]
arg [/usr/lib/gcc/x86_64-linux-gnu/9/crtendS.o] ==> ignore
arg [/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/crtn.o] ==> 
ignore
  collapse library dir [/usr/lib/gcc/x86_64-linux-gnu/9] ==> 
[/usr/lib/gcc/x86_64-linux-gnu/9]
  collapse library dir 
[/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu] ==> 
[/usr/lib/x86_64-linux-gnu]
  collapse library dir [/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib] ==> 
[/usr/lib]
  collapse library dir [/lib/x86_64-linux-gnu] ==> [/lib/x86_64-linux-gnu]
  collapse library dir [/lib/../lib] ==> [/lib]
  collapse library dir [/usr/lib/x86_64-linux-gnu] ==> 
[/usr/lib/x86_64-linux-gnu]
  collapse library dir [/usr/lib/../lib] ==> [/usr/lib]
  collapse library dir [/usr/lib/gcc/x86_64-linux-gnu/9/../../..] ==> [/usr/lib]
  implicit libs: [niftiio;stdc++;m;gcc_s;gcc;c;gcc_s;gcc]
  implicit dirs: 
[/usr/lib/gcc/x86_64-linux-gnu/9;/usr/lib/x86_64-linux-gnu;/usr/lib;/lib/x86_64-linux-gnu;/lib]
  implicit fwks: []


dh_auto_configure: cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr 
-DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc 
-DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON 
-DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run 
"-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON 
-DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_INSTALL_PREFIX=/usr 
-DCMAKE_BUILD_TYPE=RELEASE -DCMAKE_SKIP_RPATH=ON 
-DSOURCE_DATE_EPOCH=OURCE_DATE_EPOCH -DBUILD_DOCUMENTATION=ON 
-DELASTIX_USE_MEVISDICOMTIFF:BOOL=OFF 
-DUSE_KNNGraphAlphaMutualInformationMetric:BOOL=ON .. returned exit code 1
make[1]: *** [debian/rules:27: override_dh_auto_configure] Error 2
make[1]: Leaving directory '/<>'
make: *** [debian/rules:12: binary] Error 2
[...]

  (https://launchpad.net/ubuntu/+source/elastix/4.9.0-1build1/+build/18156068)

I see nothing in the cmake output that looks like an error to me, up until
the exit code, so I'm not sure what to make of this failure.

Please note that elastix has been removed from testing at some point,
allowing the new opencv + gdcm to transition there, but somehow this never
resulted in an RC bug filed against elastix.

-- 
Steve Langasek   Give me a lever long enough and a Free OS
Debian Developer   to set it on, and I can move the world.
Ubuntu Developer   https://www.debian.org/
slanga...@ubuntu.com vor...@debian.org


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