Bug#951139: Can someone please have a look (Was: Bug#951139: toil fails it's autopkg tests)

2020-02-14 Thread Michael Crusoe
I've uploaded new packages of toil, cwltool, and python-schema-salad that
should fix this


Bug#951139: Can someone please have a look (Was: Bug#951139: toil fails it's autopkg tests)

2020-02-13 Thread Andreas Tille
Hi,

in case you might have missed this.  Seems to be serious to me.

Kind regards

  Andreas.

On Tue, Feb 11, 2020 at 05:10:10PM +0100, Matthias Klose wrote:
> Package: src:toil
> Version: 3.23.1-1
> Severity: serious
> Tags: sid bullseye
> 
> seen in https://ci.debian.net/packages/t/toil
> toil fails it's autopkg tests
> 
> [...]
> autopkgtest [19:11:47]: test smoke-test: [---
> Traceback (most recent call last):
>   File "/usr/bin/toil", line 11, in 
> load_entry_point('toil==3.18.0', 'console_scripts', 'toil')()
>   File "/usr/lib/python3/dist-packages/toil/utils/toilMain.py", line 13, in 
> main
> modules = loadModules()
>   File "/usr/lib/python3/dist-packages/toil/utils/toilMain.py", line 39, in
> loadModules
> from toil.utils import (toilKill,
>   File "/usr/lib/python3/dist-packages/toil/utils/toilStatus.py", line 34, in
> 
> from toil.jobStores.abstractJobStore import NoSuchJobStoreException,
> NoSuchFileException
>   File "/usr/lib/python3/dist-packages/toil/jobStores/abstractJobStore.py", 
> line
> 39, in 
> from toil.job import JobException
>   File "/usr/lib/python3/dist-packages/toil/job.py", line 51, in 
> from toil.deferred import DeferredFunction
>   File "/usr/lib/python3/dist-packages/toil/deferred.py", line 34, in 
> from toil.resource import ModuleDescriptor
>   File "/usr/lib/python3/dist-packages/toil/resource.py", line 43, in 
> from toil.version import exactPython
> ImportError: cannot import name 'exactPython' from 'toil.version'
> (/usr/lib/python3/dist-packages/toil/version.py)
> autopkgtest [19:11:48]: test smoke-test: ---]
> autopkgtest [19:11:48]: test smoke-test:  - - - - - - - - - - results - - - - 
> -
> - - - - -
> smoke-test   FAIL non-zero exit status 1
> autopkgtest [19:11:48]: test smoke-test:  - - - - - - - - - - stderr - - - - 
> - -
> - - - -
> Traceback (most recent call last):
>   File "/usr/bin/toil", line 11, in 
> load_entry_point('toil==3.18.0', 'console_scripts', 'toil')()
>   File "/usr/lib/python3/dist-packages/toil/utils/toilMain.py", line 13, in 
> main
> modules = loadModules()
>   File "/usr/lib/python3/dist-packages/toil/utils/toilMain.py", line 39, in
> loadModules
> from toil.utils import (toilKill,
>   File "/usr/lib/python3/dist-packages/toil/utils/toilStatus.py", line 34, in
> 
> from toil.jobStores.abstractJobStore import NoSuchJobStoreException,
> NoSuchFileException
>   File "/usr/lib/python3/dist-packages/toil/jobStores/abstractJobStore.py", 
> line
> 39, in 
> from toil.job import JobException
>   File "/usr/lib/python3/dist-packages/toil/job.py", line 51, in 
> from toil.deferred import DeferredFunction
>   File "/usr/lib/python3/dist-packages/toil/deferred.py", line 34, in 
> from toil.resource import ModuleDescriptor
>   File "/usr/lib/python3/dist-packages/toil/resource.py", line 43, in 
> from toil.version import exactPython
> ImportError: cannot import name 'exactPython' from 'toil.version'
> (/usr/lib/python3/dist-packages/toil/version.py)
> autopkgtest [19:11:48]:  summary
> smoke-test   FAIL non-zero exit status 1
> 
> ___
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-- 
http://fam-tille.de



Bug#951139: toil fails it's autopkg tests

2020-02-11 Thread Matthias Klose
Package: src:toil
Version: 3.23.1-1
Severity: serious
Tags: sid bullseye

seen in https://ci.debian.net/packages/t/toil
toil fails it's autopkg tests

[...]
autopkgtest [19:11:47]: test smoke-test: [---
Traceback (most recent call last):
  File "/usr/bin/toil", line 11, in 
load_entry_point('toil==3.18.0', 'console_scripts', 'toil')()
  File "/usr/lib/python3/dist-packages/toil/utils/toilMain.py", line 13, in main
modules = loadModules()
  File "/usr/lib/python3/dist-packages/toil/utils/toilMain.py", line 39, in
loadModules
from toil.utils import (toilKill,
  File "/usr/lib/python3/dist-packages/toil/utils/toilStatus.py", line 34, in

from toil.jobStores.abstractJobStore import NoSuchJobStoreException,
NoSuchFileException
  File "/usr/lib/python3/dist-packages/toil/jobStores/abstractJobStore.py", line
39, in 
from toil.job import JobException
  File "/usr/lib/python3/dist-packages/toil/job.py", line 51, in 
from toil.deferred import DeferredFunction
  File "/usr/lib/python3/dist-packages/toil/deferred.py", line 34, in 
from toil.resource import ModuleDescriptor
  File "/usr/lib/python3/dist-packages/toil/resource.py", line 43, in 
from toil.version import exactPython
ImportError: cannot import name 'exactPython' from 'toil.version'
(/usr/lib/python3/dist-packages/toil/version.py)
autopkgtest [19:11:48]: test smoke-test: ---]
autopkgtest [19:11:48]: test smoke-test:  - - - - - - - - - - results - - - - -
- - - - -
smoke-test   FAIL non-zero exit status 1
autopkgtest [19:11:48]: test smoke-test:  - - - - - - - - - - stderr - - - - - -
- - - -
Traceback (most recent call last):
  File "/usr/bin/toil", line 11, in 
load_entry_point('toil==3.18.0', 'console_scripts', 'toil')()
  File "/usr/lib/python3/dist-packages/toil/utils/toilMain.py", line 13, in main
modules = loadModules()
  File "/usr/lib/python3/dist-packages/toil/utils/toilMain.py", line 39, in
loadModules
from toil.utils import (toilKill,
  File "/usr/lib/python3/dist-packages/toil/utils/toilStatus.py", line 34, in

from toil.jobStores.abstractJobStore import NoSuchJobStoreException,
NoSuchFileException
  File "/usr/lib/python3/dist-packages/toil/jobStores/abstractJobStore.py", line
39, in 
from toil.job import JobException
  File "/usr/lib/python3/dist-packages/toil/job.py", line 51, in 
from toil.deferred import DeferredFunction
  File "/usr/lib/python3/dist-packages/toil/deferred.py", line 34, in 
from toil.resource import ModuleDescriptor
  File "/usr/lib/python3/dist-packages/toil/resource.py", line 43, in 
from toil.version import exactPython
ImportError: cannot import name 'exactPython' from 'toil.version'
(/usr/lib/python3/dist-packages/toil/version.py)
autopkgtest [19:11:48]:  summary
smoke-test   FAIL non-zero exit status 1