Bug#966214: vienna-rna: FTBFS with GCC 10: multiple definition of ... due to -fno-common
Control: tags -1 + patch Hi, the attached patch fixes the FTBFS with GCC-10. Regards, -- Luis Paulo (lpfll) diff -Nru vienna-rna-2.4.14+dfsg/debian/patches/fix-ftbfs-with-gcc-10.patch vienna-rna-2.4.14+dfsg/debian/patches/fix-ftbfs-with-gcc-10.patch --- vienna-rna-2.4.14+dfsg/debian/patches/fix-ftbfs-with-gcc-10.patch 1969-12-31 21:00:00.0 -0300 +++ vienna-rna-2.4.14+dfsg/debian/patches/fix-ftbfs-with-gcc-10.patch 2020-08-19 01:11:41.0 -0300 @@ -0,0 +1,35 @@ +Description: Fix FTBFS with GCC-10. +Author: Luis Paulo Linares +Bug-Debian: https://bugs.debian.org/966214 +Index: vienna-rna-2.4.14+dfsg/src/Kinfold/globals.c +=== +--- vienna-rna-2.4.14+dfsg.orig/src/Kinfold/globals.c vienna-rna-2.4.14+dfsg/src/Kinfold/globals.c +@@ -25,6 +25,10 @@ + #include "globals.h" + #include "cmdline.h" + ++GlobVars GSV; ++GlobArrays GAV; ++GlobToggles GTV; ++ + /* forward declarations privat functions */ + static void ini_globs(void); + static void ini_gtoggles (void); +Index: vienna-rna-2.4.14+dfsg/src/Kinfold/globals.h +=== +--- vienna-rna-2.4.14+dfsg.orig/src/Kinfold/globals.h vienna-rna-2.4.14+dfsg/src/Kinfold/globals.h +@@ -88,9 +88,9 @@ void clean_up_globals(void); + void log_prog_params(FILE *FP); + void log_start_stop(FILE *FP); + +-GlobVars GSV; +-GlobArrays GAV; +-GlobToggles GTV; ++extern GlobVars GSV; ++extern GlobArrays GAV; ++extern GlobToggles GTV; + + #endif + diff -Nru vienna-rna-2.4.14+dfsg/debian/patches/series vienna-rna-2.4.14+dfsg/debian/patches/series --- vienna-rna-2.4.14+dfsg/debian/patches/series 2019-09-09 08:19:08.0 -0300 +++ vienna-rna-2.4.14+dfsg/debian/patches/series 2020-08-19 01:11:41.0 -0300 @@ -1,3 +1,4 @@ g2.patch tutorial.patch addHelp2ManWrapper.patch +fix-ftbfs-with-gcc-10.patch
Bug#966214: vienna-rna: FTBFS with GCC 10: multiple definition of ... due to -fno-common
Control: tags -1 + patch Hi, the attached patch fixes the FTBFS with GCC-10. Regards, -- Luis Paulo (lpfll)
Bug#966214: vienna-rna: FTBFS with GCC 10: multiple definition of ... due to -fno-common
Source: vienna-rna Version: 2.4.14+dfsg-1 Severity: serious Tags: ftbfs Justification: fails to build from source User: debian-...@lists.debian.org Usertags: ftbfs-gcc-10 Hi, vienna-rna started to FTBFS when GCC 10 was made the default compiler: gcc -I./../../src/ViennaRNA -I./../../src -I/usr/include/json-c/ -I/usr/include/libsvm/ -Wl,-z,relro -o Kinfold baum.o cache.o globals.o main.o nachbar.o cmdline.o -fno-strict-aliasing -flto -L./../../src/ViennaRNA -lRNA -fopenmp -lgsl -lgslcblas -lmpfr -lgmp -lm /usr/bin/ld: globals.o:(.bss+0x0): multiple definition of `GSV'; baum.o:(.bss+0x0): first defined here /usr/bin/ld: globals.o:(.bss+0x60): multiple definition of `GAV'; baum.o:(.bss+0x60): first defined here /usr/bin/ld: globals.o:(.bss+0x8c0): multiple definition of `GTV'; baum.o:(.bss+0x8c0): first defined here /usr/bin/ld: main.o:(.bss+0x0): multiple definition of `GSV'; baum.o:(.bss+0x0): first defined here /usr/bin/ld: main.o:(.bss+0x60): multiple definition of `GAV'; baum.o:(.bss+0x60): first defined here /usr/bin/ld: main.o:(.bss+0x8c0): multiple definition of `GTV'; baum.o:(.bss+0x8c0): first defined here /usr/bin/ld: nachbar.o:(.bss+0x0): multiple definition of `GSV'; baum.o:(.bss+0x0): first defined here /usr/bin/ld: nachbar.o:(.bss+0x60): multiple definition of `GAV'; baum.o:(.bss+0x60): first defined here /usr/bin/ld: nachbar.o:(.bss+0x8c0): multiple definition of `GTV'; baum.o:(.bss+0x8c0): first defined here collect2: error: ld returned 1 exit status make[6]: *** [Makefile:485: Kinfold] Error 1 More information about the corresponding GCC change can be found here: https://gcc.gnu.org/gcc-10/porting_to.html "Default to -fno-common" Andreas
