Control: tags -1 pending On Mon, Aug 03, 2020 at 10:07:38AM +0200, Lucas Nussbaum wrote: > Relevant part (hopefully): > > g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong > > -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 > > -Wl,-z,relro -Wl,-z,now sift_bam_max_cov.cpp -Wall -lhts -O2 -o bamsifter > > sift_bam_max_cov.cpp: In function ‘int main(int, char**)’: > > sift_bam_max_cov.cpp:99:10: error: ‘string’ is not a member of ‘std’ > > 99 | std::string tmp_text(input_header->text, input_header->l_text); > > | ^~~~~~ > > sift_bam_max_cov.cpp:16:1: note: ‘std::string’ is defined in header > > ‘<string>’; did you forget to ‘#include <string>’? > > 15 | #include "htslib/bgzf.h" > > +++ |+#include <string>
I've fixed this bug (and I think new upstream has found another way by using '-std=c++11' option (which would be hopefully unneeded by my patch but I did not tested). Unfortunately the autopkgtest is broken by the new version which I imported as well. Not sure whether seqtk-trinity is missing and thus autopkgtest fails is the only problem. seqtk-trinity was provided as *binary* which needed to be removed in Files-Excluded. I have not checked how / whether it is build and whether other issues might exist. Any takers for the remaining issues? Kind regards Andreas. -- http://fam-tille.de