Package: libfastahack Version: 1.0.0+dfsg-6 Severity: normal Tags: patch User: ubuntu-de...@lists.ubuntu.com Usertags: origin-ubuntu hirsute ubuntu-patch
Hi Andreas, The libfastahack package has been failing to build on ppc64el in Ubuntu due to mismatched symbols file. This is probably due to the fact that Ubuntu builds all packages on ppc64el with -O3 by default, causing some symbols to be inlined and optimized out of the symbol table. Surprisingly, this build failure also includes some symbols that are *added* on ppc64el relative to other architectures, which I can't say I've ever seen before. However, since these are also template symbols, they are irrelevant to the ABI and can safely be marked as optional as well. Please find attached a patch that allows the libfastahack build to succeed on ppc64el in Ubuntu. Cheers, -- Steve Langasek Give me a lever long enough and a Free OS Debian Developer to set it on, and I can move the world. Ubuntu Developer https://www.debian.org/ slanga...@ubuntu.com vor...@debian.org
diff -Nru libfastahack-1.0.0+dfsg/debian/libfastahack0.symbols libfastahack-1.0.0+dfsg/debian/libfastahack0.symbols --- libfastahack-1.0.0+dfsg/debian/libfastahack0.symbols 2020-07-23 05:51:27.000000000 -0700 +++ libfastahack-1.0.0+dfsg/debian/libfastahack0.symbols 2020-12-09 12:51:45.000000000 -0800 @@ -32,11 +32,14 @@ _ZN15FastaIndexEntryD1Ev@Base 0.0+git20160702.bbc645f _ZN15FastaIndexEntryD2Ev@Base 0.0+git20160702.bbc645f _ZNKSt5ctypeIcE8do_widenEc@Base 0.0+git20160702.bbc645f + (optional)_ZNSt12_Destroy_auxILb0EE9__destroyIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEEvT_S9_@Base 1.0.0+dfsg + (optional)_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE15FastaIndexEntryED1Ev@Base 1.0.0+dfsg + (optional)_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE15FastaIndexEntryED2Ev@Base 1.0.0+dfsg _ZNSt6vectorI15FastaIndexEntrySaIS0_EE17_M_realloc_insertIJRKS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 0.0+git20160702.bbc645f _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRKS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 0.0+git20160702.bbc645f (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 0.0+git20160702.bbc645f - _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEC1ERKS7_@Base 1.0.0+dfsg - _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEC2ERKS7_@Base 1.0.0+dfsg + (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEC1ERKS7_@Base 1.0.0+dfsg + (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEC2ERKS7_@Base 1.0.0+dfsg _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base 0.0+git20160702.bbc645f _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base 0.0+git20160702.bbc645f _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_15FastaIndexEntryESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE17_M_emplace_uniqueIJS6_IS5_S8_EEEES6_ISt17_Rb_tree_iteratorIS9_EbEDpOT_@Base 0.0+git20160702.bbc645f @@ -48,7 +51,7 @@ _ZSt13__heap_selectIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEENS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_SD_SD_T0_@Base 1.0.0+dfsg _ZSt16__insertion_sortIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEENS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_SD_T0_@Base 0.0+git20160702.bbc645f _ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEElNS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_SD_T0_T1_@Base 0.0+git20160702.bbc645f - _ZSt22__move_median_to_firstIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEENS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_SD_SD_SD_T0_@Base 1.0.0+dfsg + (optional)_ZSt22__move_median_to_firstIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEENS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_SD_SD_SD_T0_@Base 1.0.0+dfsg _ZSt25__unguarded_linear_insertIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEENS0_5__ops14_Val_comp_iterIPFbS2_S2_EEEEvT_T0_@Base 0.0+git20160702.bbc645f _ZlsRSoR10FastaIndex@Base 0.0+git20160702.bbc645f _ZlsRSoRK15FastaIndexEntry@Base 0.0+git20160702.bbc645f
