Bug#890400: Soname bump + symbols file in Git - please verify: Bug#890400: physamp: autopkgtest failure
Dear Julien, On Thu, Feb 15, 2018 at 07:51:03PM +0100, Julien Yann Dutheil wrote: > > Thanks a lot for the proposal. I would like to fix that one upstream to, so > I will probably upload a new version. This is why I did not yet uploaded. > More generally, we'e thinking of some ways to improve things upstream, > because a minor version update should not lead to an interface break in my > opinion... We definitely share the same opinion here. ;-) Kind regards Andreas. -- http://fam-tille.de
Bug#890400: Soname bump + symbols file in Git - please verify: Bug#890400: physamp: autopkgtest failure
Dear Andreas, Thanks a lot for the proposal. I would like to fix that one upstream to, so I will probably upload a new version. More generally, we'e thinking of some ways to improve things upstream, because a minor version update should not lead to an interface break in my opinion... Best, Julien. On Thu, Feb 15, 2018 at 4:00 PM, Andreas Tille wrote: > Control: tags -1 pending > > Hi Julien, > > I've commited a *proposal* in Git. I did not uploaded yet since I have > no idea whether you as upstream would prefer a different solution to > solve this issue. > > In any case I also added a symbols file. If we had this before it would > have ringed a bell for the symbols change. > > Please let me know what you think. > > Kind regards > >Andreas. > > -- > http://fam-tille.de > -- Julien Y. Dutheil, Ph-D 0 (+49) 6421 178 986 § Max Planck Institute for Evolutionary Biology Molecular Systems Evolution Department of Evolutionary Genetics Plön -- GERMANY § Institute of Evolutionary Sciences - Montpellier University of Montpellier 2 -- FRANCE
Bug#890400: Soname bump + symbols file in Git - please verify: Bug#890400: physamp: autopkgtest failure
Control: tags -1 pending Hi Julien, I've commited a *proposal* in Git. I did not uploaded yet since I have no idea whether you as upstream would prefer a different solution to solve this issue. In any case I also added a symbols file. If we had this before it would have ringed a bell for the symbols change. Please let me know what you think. Kind regards Andreas. -- http://fam-tille.de
Bug#890400: physamp: autopkgtest failure
Control: reassign -1 libbpp-core3 2.3.2-1 Control: reassign 890405 libbpp-core3 2.3.2-1 Control: forcemerge -1 890405 Control: retitle -1 libbpp-core3: ABI change without soname chenge Control: affects -1 src:physamp src:maffilter On Wed, Feb 14, 2018 at 04:08:10PM +0100, Julien Yann Dutheil wrote: > Will do, also for maffilter. > > J. > > On 14 Feb 2018 13:15, "Andreas Tille" wrote: > > > Hi Graham, > > > > I guess Julien Dutheil will care for a patch. > > > > Kind regards > > > >Andreas. > > > > On Wed, Feb 14, 2018 at 02:00:18PM +0200, Graham Inggs wrote: > > > Source: physamp > > > Version: 1.0.3-1 > > > Severity: serious > > > User: ubuntu-de...@lists.ubuntu.com > > > Usertags: origin-ubuntu bionic autopkgtest > > > > > > Hi Maintainer > > > > > > Since the upload of libbpp-core 2.3.2-1, physamp's autopkgtests have been > > > failing [1] with the following error: > > > > > > autopkgtest [03:46:54]: test run-unit-test: [--- > > > bppalnoptim: symbol lookup error: bppalnoptim: undefined symbol: _ > > ZN3bpp16ApplicationTools18getDoubleParameterERKNSt7__ > > cxx1112basic_stringIcSt11char_traitsIcESaIcEEERSt3mapIS6_S6_ > > St4lessIS6_ESaISt4pairIS7_S6_EEEdS8_bi >... Note that there is nothing in maffilter or physamp that needs fixing,[1] the bug is that the libbpp-core3 ABI changed without changing the soname: src/Bpp/App/ApplicationTools.h: static double getDoubleParameter( const std::string& parameterName, - std::map& params, + const std::map& params, double defaultValue, const std::string& suffix = "", bool suffixIsOptional = true, And a few other functions with similar changes. In C++ this is an ABI change. cu Adrian [1] a no-change rebuild would make them work again, but that wouldn't fix the actual problem -- "Is there not promise of rain?" Ling Tan asked suddenly out of the darkness. There had been need of rain for many days. "Only a promise," Lao Er said. Pearl S. Buck - Dragon Seed
Bug#890400: physamp: autopkgtest failure
Will do, also for maffilter. J. On 14 Feb 2018 13:15, "Andreas Tille" wrote: > Hi Graham, > > I guess Julien Dutheil will care for a patch. > > Kind regards > >Andreas. > > On Wed, Feb 14, 2018 at 02:00:18PM +0200, Graham Inggs wrote: > > Source: physamp > > Version: 1.0.3-1 > > Severity: serious > > User: ubuntu-de...@lists.ubuntu.com > > Usertags: origin-ubuntu bionic autopkgtest > > > > Hi Maintainer > > > > Since the upload of libbpp-core 2.3.2-1, physamp's autopkgtests have been > > failing [1] with the following error: > > > > autopkgtest [03:46:54]: test run-unit-test: [--- > > bppalnoptim: symbol lookup error: bppalnoptim: undefined symbol: _ > ZN3bpp16ApplicationTools18getDoubleParameterERKNSt7__ > cxx1112basic_stringIcSt11char_traitsIcESaIcEEERSt3mapIS6_S6_ > St4lessIS6_ESaISt4pairIS7_S6_EEEdS8_bi > > autopkgtest [03:46:55]: test run-unit-test: ---] > > autopkgtest [03:46:55]: test run-unit-test: - - - - - - - - - - results > - - > > - - - - - - - - > > run-unit-testFAIL non-zero exit status 127 > > > > > > It looks like a symbol was dropped and a transition is needed. > > > > Regards > > Graham > > > > > > [1] https://ci.debian.net/packages/p/physamp/unstable/amd64/ > > > > ___ > > Debian-med-packaging mailing list > > debian-med-packag...@lists.alioth.debian.org > > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/ > debian-med-packaging > > > > -- > http://fam-tille.de >
Bug#890400: physamp: autopkgtest failure
Hi Graham, I guess Julien Dutheil will care for a patch. Kind regards Andreas. On Wed, Feb 14, 2018 at 02:00:18PM +0200, Graham Inggs wrote: > Source: physamp > Version: 1.0.3-1 > Severity: serious > User: ubuntu-de...@lists.ubuntu.com > Usertags: origin-ubuntu bionic autopkgtest > > Hi Maintainer > > Since the upload of libbpp-core 2.3.2-1, physamp's autopkgtests have been > failing [1] with the following error: > > autopkgtest [03:46:54]: test run-unit-test: [--- > bppalnoptim: symbol lookup error: bppalnoptim: undefined symbol: > _ZN3bpp16ApplicationTools18getDoubleParameterERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERSt3mapIS6_S6_St4lessIS6_ESaISt4pairIS7_S6_EEEdS8_bi > autopkgtest [03:46:55]: test run-unit-test: ---] > autopkgtest [03:46:55]: test run-unit-test: - - - - - - - - - - results - - > - - - - - - - - > run-unit-testFAIL non-zero exit status 127 > > > It looks like a symbol was dropped and a transition is needed. > > Regards > Graham > > > [1] https://ci.debian.net/packages/p/physamp/unstable/amd64/ > > ___ > Debian-med-packaging mailing list > debian-med-packag...@lists.alioth.debian.org > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging > -- http://fam-tille.de
Bug#890400: physamp: autopkgtest failure
Source: physamp Version: 1.0.3-1 Severity: serious User: ubuntu-de...@lists.ubuntu.com Usertags: origin-ubuntu bionic autopkgtest Hi Maintainer Since the upload of libbpp-core 2.3.2-1, physamp's autopkgtests have been failing [1] with the following error: autopkgtest [03:46:54]: test run-unit-test: [--- bppalnoptim: symbol lookup error: bppalnoptim: undefined symbol: _ZN3bpp16ApplicationTools18getDoubleParameterERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERSt3mapIS6_S6_St4lessIS6_ESaISt4pairIS7_S6_EEEdS8_bi autopkgtest [03:46:55]: test run-unit-test: ---] autopkgtest [03:46:55]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - run-unit-testFAIL non-zero exit status 127 It looks like a symbol was dropped and a transition is needed. Regards Graham [1] https://ci.debian.net/packages/p/physamp/unstable/amd64/