Source: python-pybedtools Version: 0.7.10-2 Severity: serious Some recent change in usntable makes python-pybedtools FTBFS:
https://tests.reproducible-builds.org/debian/history/python-pybedtools.html https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/python-pybedtools.html ... dh_auto_test -O--buildsystem=pybuild I: pybuild pybuild:219: cp /build/1st/python-pybedtools-0.7.10/debian/mpl-expected.png /build/1st/python-pybedtools-0.7.10/.pybuild/pythonX.Y_3.6/build/pybedtools/test/ I: pybuild base:184: cd /build/1st/python-pybedtools-0.7.10/.pybuild/pythonX.Y_3.6/build; python3.6 -m nose --attr '!url' ...................................F......................................F....................... ***** *****WARNING: Genome (-g) files are ignored when BAM input is provided. ***** ..............................................................................................................................................................................................................................................................................................................................FFFFFFFF.........FFFF.......... ***** *****WARNING: Genome (-g) files are ignored when BAM input is provided. ***** . ***** *****WARNING: Genome (-g) files are ignored when BAM input is provided. ***** ........................................S.. ====================================================================== FAIL: pybedtools.test.test1.test_randomstats ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python3/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/build/1st/python-pybedtools-0.7.10/.pybuild/pythonX.Y_3.6/build/pybedtools/test/test1.py", line 796, in test_randomstats assert results['percentile'] == 89.5 AssertionError ====================================================================== FAIL: pybedtools.test.test1.test_reldist ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python3/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/build/1st/python-pybedtools-0.7.10/.pybuild/pythonX.Y_3.6/build/pybedtools/test/test1.py", line 1461, in test_reldist assert results == {'reldist': [0.15, 0.21, 0.28], 'count': [1, 1, 1], 'total': [3, 3, 3], 'fraction': [0.333, 0.333, 0.333]}, results AssertionError: {'reldist': [0.21], 'count': [1], 'total': [1], 'fraction': [1.0]} ====================================================================== FAIL: merge, i=filename ibam=False, {'s': True} ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python3/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/build/1st/python-pybedtools-0.7.10/.pybuild/pythonX.Y_3.6/build/pybedtools/test/test_iter.py", line 68, in run assert res == expected AssertionError: -------------------- >> begin captured stdout << --------------------- /build/1st/python-pybedtools-0.7.10/.pybuild/pythonX.Y_3.6/build/pybedtools/test/tmp/pybedtools.0oti4rl_.tmp Method call: BedTool.merge(s=True) Got: chr1 1 200 chr1 150 500 chr1 900 950 Expected: chr1 1 200 + chr1 150 500 - chr1 900 950 + Diff: --- +++ @@ -1,3 +1,3 @@ -chr1 1 200 -chr1 150 500 -chr1 900 950 +chr1 1 200 + +chr1 150 500 - +chr1 900 950 + Showing special characters: Got: chr1\t1\t200\n chr1\t150\t500\n chr1\t900\t950\n Expected: chr1\t1\t200\t+\n chr1\t150\t500\t-\n chr1\t900\t950\t+\n Diff: --- +++ @@ -1,3 +1,3 @@ -chr1\t1\t200\n -chr1\t150\t500\n -chr1\t900\t950\n +chr1\t1\t200\t+\n +chr1\t150\t500\t-\n +chr1\t900\t950\t+\n --------------------- >> end captured stdout << ---------------------- ... FAILED (SKIP=1, failures=14) E: pybuild pybuild:283: test: plugin distutils failed with: exit code=1: cd /build/1st/python-pybedtools-0.7.10/.pybuild/pythonX.Y_3.6/build; python3.6 -m nose --attr '!url' dh_auto_test: pybuild --test --test-nose -i python{version} -p 3.6 returned exit code 13 make: *** [debian/rules:14: build] Error 25
