Bug#936609: cblas / gsl hint needed (Was: Bug#936609: Ported ghmm to Python3 but issues with clapack)

2020-12-17 Thread Andreas Tille
On Thu, Dec 17, 2020 at 09:45:30AM +, PICCA Frederic-Emmanuel wrote: > I just built ghmm by removing --with-gsl. > > It seems that the gsl implementation of blas conflict with the one provided > in atlas. > so --enable-gsl + --enable-atlas seems wrong... Works, uploaded, thanks a lot,

Bug#936609: cblas / gsl hint needed (Was: Bug#936609: Ported ghmm to Python3 but issues with clapack)

2020-12-17 Thread PICCA Frederic-Emmanuel
Hello Andreas, I just built ghmm by removing --with-gsl. It seems that the gsl implementation of blas conflict with the one provided in atlas. so --enable-gsl + --enable-atlas seems wrong... +--+ | Summary

Bug#936609: cblas / gsl hint needed (Was: Bug#936609: Ported ghmm to Python3 but issues with clapack)

2020-12-17 Thread Andreas Tille
Hi again, any more hints how we finally can build ghmm? Kind regards Andreas. On Sat, Dec 05, 2020 at 04:52:14PM +0100, Andreas Tille wrote: > Hi Dirk, > > thanks for the hint but simply using gsl as is was done in this package > and now it does not build any more. However, maybe I

Bug#936609: Advent calendar bug squashing issue (Was: Bug#936609: cblas / gsl hint needed (Was: Bug#936609: Ported ghmm to Python3 but issues with clapack))

2020-12-05 Thread Andreas Tille
Hi Dirk, thanks for the hint but simply using gsl as is was done in this package and now it does not build any more. However, maybe I misunderstood you hint. Kind regards Andreas. On Sat, Dec 05, 2020 at 08:32:33AM -0600, Dirk Eddelbuettel wrote: > > On 5 December 2020 at 12:09,

Bug#936609: Advent calendar bug squashing issue (Was: Bug#936609: cblas / gsl hint needed (Was: Bug#936609: Ported ghmm to Python3 but issues with clapack))

2020-12-05 Thread Dirk Eddelbuettel
On 5 December 2020 at 12:09, Andreas Tille wrote: | this issue is something for our advent calendar. Anybody with cblas | knowledge? I am the GNU GSL maintainer, and I at one point also worked a lot with the Atlas and other LAPACK/BLAS packages. I think Mo may be wrong here: I did the same

Bug#936609: Advent calendar bug squashing issue (Was: Bug#936609: cblas / gsl hint needed (Was: Bug#936609: Ported ghmm to Python3 but issues with clapack))

2020-12-05 Thread Andreas Tille
Hi folks, this issue is something for our advent calendar. Anybody with cblas knowledge? Kind regards Andreas. On Mon, Jan 27, 2020 at 10:55:25AM +0100, Andreas Tille wrote: > Hi again, > > with my last mail I wanted to express: H, to stupid to turn > this hint into real code.

Bug#936609: cblas / gsl hint needed (Was: Bug#936609: Ported ghmm to Python3 but issues with clapack)

2020-01-27 Thread Andreas Tille
Hi again, with my last mail I wanted to express: H, to stupid to turn this hint into real code. Any more detailed hint / patch would be really welcome. Kind regards Andreas. On Mon, Jan 06, 2020 at 12:56:17PM +0100, Andreas Tille wrote: > Hi Mo, > > On Sun, Jan 05, 2020 at

Bug#936609: cblas / gsl hint needed (Was: Bug#936609: Ported ghmm to Python3 but issues with clapack)

2020-01-06 Thread Andreas Tille
Hi Mo, On Sun, Jan 05, 2020 at 08:19:07AM +, Mo Zhou wrote: > GSL provides a set of CBLAS API/ABI, delivered with shared object > "libgslcblas.so" and header "gsl_cblas.h". That subset becomes > redundant once you include the headers of any standard/compatible > (C)BLAS library. That's what

Bug#936609: cblas / gsl hint needed (Was: Bug#936609: Ported ghmm to Python3 but issues with clapack)

2020-01-05 Thread Mo Zhou
GSL provides a set of CBLAS API/ABI, delivered with shared object "libgslcblas.so" and header "gsl_cblas.h". That subset becomes redundant once you include the headers of any standard/compatible (C)BLAS library. That's what the compilation error means. Make sure that the code only use one CBLAS

Bug#936609: cblas / gsl hint needed (Was: Bug#936609: Ported ghmm to Python3 but issues with clapack)

2020-01-04 Thread Andreas Tille
Control: tags -1 help Hi, I was asking upstream about this issue[1] and an issue about gsl usage is suspected. Any hint how this can be fixed? > Finally I have a question about building with lapack. I get: > > ... > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time >