Bug#995200: r-bioc-dropletutils: autopkgtest failures

2021-09-27 Thread Nilesh Patra
# Reduce severity severity 995200 important thanks As per discussion here[1], we ignored these two tests for now, hence decreasing the severity, so everything migrates timely. [1]: https://lists.debian.org/debian-r/2021/09/msg00127.html Nilesh signature.asc Description: PGP signature

Bug#995204: marked as done (r-bioc-metapod: autopkgtest failures)

2021-09-27 Thread Debian Bug Tracking System
Your message dated Tue, 28 Sep 2021 11:02:08 +0530 with message-id and subject line Re: r-bioc-metapod: autopkgtest failures has caused the Debian Bug report #995204, regarding r-bioc-metapod: autopkgtest failures to be marked as done. This means that you claim that the problem has been dealt

Processed: Re: r-bioc-dropletutils: autopkgtest failures

2021-09-27 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org: > # Reduce severity > severity 995200 important Bug #995200 [src:r-bioc-dropletutils] r-bioc-dropletutils: autopkgtest failures Severity set to 'important' from 'serious' > thanks Stopping processing here. Please contact me if you need assistance.

Bug#995220: FTBFS: build broken by typescript update

2021-09-27 Thread Yadd
Package: ts-node Version: 9.1.1-4 Severity: serious Tags: sid ts-node is broken by typescript update. This fix first part of build: --- a/src/repl.ts +++ b/src/repl.ts @@ -98,6 +98,7 @@ export function createRepl (options: Cre console.error(error) } } else

Bug#995208: marked as done (r-bioc-rhdf5filters: autopkgtest regression)

2021-09-27 Thread Debian Bug Tracking System
Your message dated Tue, 28 Sep 2021 05:48:21 + with message-id and subject line Bug#995208: fixed in r-bioc-rhdf5filters 1.4.0+dfsg-3 has caused the Debian Bug report #995208, regarding r-bioc-rhdf5filters: autopkgtest regression to be marked as done. This means that you claim that the

Processed: close and fix

2021-09-27 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org: > reopen 995204 Bug #995204 {Done: Nilesh Patra } [src:r-bioc-metapod] r-bioc-metapod: autopkgtest failures Bug reopened Ignoring request to alter fixed versions of bug #995204 to the same values previously set > fixed 995204 1.0.0+dfsg-3 Bug

Bug#993029: Have we found a fix for this issue yet?

2021-09-27 Thread Abraham Raji
What's the status of this bug right now? Have we notified upstream? Abraham Raji -- Mea navis aëricumbens anguillis abundat.

Bug#993198: gnome-shell-extension-system-monitor: does not declare compatibility with GNOME Shell 40

2021-09-27 Thread Samuel Henrique
Hello Leo, > On Fri, Sep 24, 2021 at 10:07 PM Samuel Henrique wrote: > > Leo, from my side you're free to push your changes whenever you want. > > I will as soon as someone gives me access to the repo ;) > Just requested access to the Gnome group, but that may take a while. I gave you

Processed: Re: Bug#995207: chrony: Using 'bindacqdevice' directive causes a SIGSYS error

2021-09-27 Thread Debian Bug Tracking System
Processing control commands: > tags -1 - upstream + moreinfo Bug #995207 [chrony] chrony: Using 'bindacqdevice' directive causes a SIGSYS error Removed tag(s) upstream. Bug #995207 [chrony] chrony: Using 'bindacqdevice' directive causes a SIGSYS error Added tag(s) moreinfo. > severity -1

Bug#995207: chrony: Using 'bindacqdevice' directive causes a SIGSYS error

2021-09-27 Thread Vincent Blut
Control: tags -1 - upstream + moreinfo Control: severity -1 important Hi, Le 2021-09-27 17:31, Steve Egbert a écrit : > Package: chrony > Version: 4.0-8 > Severity: critical > Tags: upstream > X-Debbugs-Cc: s.egb...@sbcglobal.net > > Dear Maintainer, > > > Wanted to use the 'bindacqdevice'

Bug#995208: r-bioc-rhdf5filters: autopkgtest regression

2021-09-27 Thread Sebastian Ramacher
Source: r-bioc-rhdf5filters Version: 1.4.0+dfsg-2 Severity: serious X-Debbugs-Cc: sramac...@debian.org | E: Unable to locate package r-cran-rhdf5 | pkg-r-autopkgtestFAIL badpkg | blame: r-bioc-rhdf5filters See

Bug#995207: chrony: Using 'bindacqdevice' directive causes a SIGSYS error

2021-09-27 Thread Steve Egbert
Package: chrony Version: 4.0-8 Severity: critical Tags: upstream X-Debbugs-Cc: s.egb...@sbcglobal.net Dear Maintainer, Wanted to use the 'bindacqdevice' due to my host having a dynamic IP interface. Using that 'bindacqdevice' directive keyword anywhere in my /etc/chrony/chrony.conf file

Bug#995206: r-bioc-altcdfenvs: autopkgtest regression

2021-09-27 Thread Sebastian Ramacher
Source: r-bioc-altcdfenvs Version: 1:2.54.0-1 Severity: serious X-Debbugs-Cc: sramac...@debian.org | E: Unable to locate package r-cran-r-unit | pkg-r-autopkgtestFAIL badpkg | blame: r-bioc-altcdfenvs Cheers -- Sebastian Ramacher signature.asc Description: PGP signature

Bug#995204: r-bioc-metapod: autopkgtest failures

2021-09-27 Thread Sebastian Ramacher
Source: r-bioc-metapod Version: 1.0.0+dfsg-2 Severity: serious X-Debbugs-Cc: sramac...@debian.org | > test_check("metapod") | autopkgtest [00:12:43]: ERROR: timed out on command "su -s /bin/bash debci -c set -e; export USER=`id -nu`; . /etc/profile >/dev/null 2>&1 || true; . ~/.profile

Bug#995073: gitlab: yarnpkg fails with error An unexpected error occurred: "Release not found: 2.4.2".

2021-09-27 Thread Pirate Praveen
On 26 September 2021 8:14:08 pm IST, Ondrej Zary wrote: >> yarn 3.0 needs nodejs 12. So this was a work around used to force yarn >> 2.x. Looks like there is no way to install 2.x versions of yarn anymore :( >> >> So we will have to update minimum version of nodejs to 12 (already done >> for

Bug#995202: horst FTBFS: error: format not a string literal and no format arguments

2021-09-27 Thread Helmut Grohne
Source: horst Version: 5.1-2 Severity: serious Tags: ftbfs horst fails to build from source in unstable on amd64 due to ncurses having become stricter about format strings. A build now ends as follows: | cc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security

Bug#995199: r-bioc-ioniser: autopkgtest regression

2021-09-27 Thread Sebastian Ramacher
Source: r-bioc-ioniser Version: 2.16.0+dfsg-1 Severity: serious X-Debbugs-Cc: sramac...@debian.org | ══ Failed tests | ── Error (test_Fast5Summary.R:5:1): (code run outside of `test_that()`) | Error: there is no package

Bug#995200: r-bioc-dropletutils: autopkgtest failures

2021-09-27 Thread Sebastian Ramacher
Source: r-bioc-dropletutils Version: 1.12.2+ds-1 Severity: serious X-Debbugs-Cc: sramac...@debian.org | ══ Failed tests | ── Error (test-read10x.R:129:5): read10xCounts works correctly for HDF5 counts, version < 3 ── | Error:

Processed: severity of 995120 is important

2021-09-27 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org: > severity 995120 important Bug #995120 [src:linux] linux-image-5.14.0-1-amd64: Raven Ridge cannot boot with secure memory encryption Severity set to 'important' from 'critical' > thanks Stopping processing here. Please contact me if you need

Bug#994451: golang-github-containers-common: secomp.json does not include newer syscall used by stable kernel/glibc on arm

2021-09-27 Thread Reinhard Tartler
User: release.debian@packages.debian.org Usertags: pu Tags: bullseye Severity: normal stop sorry for the abrupt ending of the previous mail. I'm attaching the debdiffs for the three uploads to this email. I'm happy to do the 3 uploads at any time. Please let me know what you think. On

Bug#995018: closed by Debian FTP Masters (reply to Julien Puydt ) (Bug#995018: fixed in jupyter-server 1.11.0-1)

2021-09-27 Thread Paul Gevers
Hi, On 27-09-2021 08:36, Debian Bug Tracking System wrote: > jupyter-server (1.11.0-1) unstable; urgency=medium > . >* Declare versioned dep on anyio (Closes: #995018). That was implemented via *build*-depends. It doesn't seem to have propagated to the Depends as the tests still fail.

Processed: [bts-link] source package src:hcxtools

2021-09-27 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org: > # > # bts-link upstream status pull for source package src:hcxtools > # see http://lists.debian.org/debian-devel-announce/2006/05/msg1.html > # https://bts-link-team.pages.debian.net/bts-link/ > # > user debian-bts-l...@lists.debian.org

Processed: [bts-link] source package vdirsyncer

2021-09-27 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org: > # > # bts-link upstream status pull for source package vdirsyncer > # see http://lists.debian.org/debian-devel-announce/2006/05/msg1.html > # https://bts-link-team.pages.debian.net/bts-link/ > # > user debian-bts-l...@lists.debian.org

Bug#993478: marked as done (src:fricas: fails to migrate to testing for too long: maintainer built arch:all binaries)

2021-09-27 Thread Debian Bug Tracking System
Your message dated Mon, 27 Sep 2021 12:58:57 -0400 with message-id <87sfxq0xbi@transcendence.maguirefamily.org> and subject line Re: src:fricas: fails to migrate to testing for too long: maintainer built arch:all binaries has caused the Debian Bug report #993478, regarding src:fricas: fails

Bug#994451: golang-github-containers-common: secomp.json does not include newer syscall used by stable kernel/glibc on arm

2021-09-27 Thread Bastien ROUCARIES
Le lun. 27 sept. 2021 à 16:08, Reinhard Tartler a écrit : > > > On Thu, Sep 16, 2021 at 4:18 AM Bastien Roucariès > wrote: >> >> Package: golang-github-containers-common >> Version: 0.33.4+ds1-1 >> Severity: critical >> Tags: upstream >> Forwarded: >>

Bug#994451: golang-github-containers-common: secomp.json does not include newer syscall used by stable kernel/glibc on arm

2021-09-27 Thread Reinhard Tartler
On Thu, Sep 16, 2021 at 4:18 AM Bastien Roucariès < roucaries.bast...@gmail.com> wrote: > Package: golang-github-containers-common > Version: 0.33.4+ds1-1 > Severity: critical > Tags: upstream > Forwarded: > https://github.com/containers/common/commit/42d1db16bfc0dbaee5781d230dc2bcbaa0849c6e >

Bug#995187: qtwebengine-opensource-src FTBFS on mips*: unistd_nr_{n32,n64,o32}.h no linger exported by the kernel

2021-09-27 Thread Adrian Bunk
Source: qtwebengine-opensource-src Version: 5.15.5+dfsg-2 Severity: serious Tags: ftbfs https://buildd.debian.org/status/fetch.php?pkg=qtwebengine-opensource-src=mips64el=5.15.6%2Bdfsg-1=1632387575=0 ... FAILED: obj/sandbox/linux/seccomp_bpf/syscall_set.o /usr/bin/g++ -MMD -MF

Bug#995185: flint-arb FTBFS on 32bit: gamma_fmpq test fails

2021-09-27 Thread Adrian Bunk
Source: flint-arb Version: 1:2.21.0-1 Severity: serious Tags: ftbfs https://buildd.debian.org/status/logs.php?pkg=flint-arb=1%3A2.21.0-1 (some 32bit ports architectures are building with nocheck) ... euler_number_fmpzPASS expPASS exp_arf_bbPASS exp_arf_rs_genericPASS

Processed: retitle 995175 to request-tracker4: CVE-2021-38562

2021-09-27 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org: > retitle 995175 request-tracker4: CVE-2021-38562 Bug #995175 [src:request-tracker4] new upstream (5.0.2) [CVE-2021-38562] Changed Bug title to 'request-tracker4: CVE-2021-38562' from 'new upstream (5.0.2) [CVE-2021-38562]'. > thanks Stopping

Processed: cloning 995167, reassign -1 to src:request-tracker4, found -1 in 4.4.3-2

2021-09-27 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org: > clone 995167 -1 Bug #995167 [request-tracker5] new upstream (5.0.2) [CVE-2021-38562] Bug 995167 cloned as bug 995175 > reassign -1 src:request-tracker4 4.4.4+dfsg-2 Bug #995175 [request-tracker5] new upstream (5.0.2) [CVE-2021-38562] Bug

Bug#995150: openmpi: segfault in mca_io_romio_dist_MPI_File_iwrite_all

2021-09-27 Thread Drew Parsons
Source: openmpi Followup-For: Bug #995150 Installing libopenmpi3-dbgsym gives a little more detail in the backtrace (gdb) bt #0 0x in ?? () #1 0x7fffad13ea84 in MPIOI_File_iwrite_all (fh=, offset=offset@entry=0, file_ptr_type=file_ptr_type@entry=101, buf=, count=13,

Bug#995150: openmpi: segfault in mca_io_romio_dist_MPI_File_iwrite_all

2021-09-27 Thread Drew Parsons
Source: openmpi Followup-For: Bug #995150 gdb on amd64 run locally confirms the segfault, running test_io.py alone. Refines the problem to MPIOI_File_iwrite_all in mca_io_romio321.so $ gdb python3 (gdb) run -m pytest test_io.py Starting program: /usr/bin/python3 -m pytest test_io.py [Thread

Bug#995167: new upstream (5.0.2) [CVE-2021-38562]

2021-09-27 Thread Daniel Baumann
Package: request-tracker5 Version: 5.0.1+dfsg-1 Severity: serious Tags: security Hi, upstream has fixed the following issue in 5.0.2: "In previous versions, RT's native login system is vulnerable to user enumeration through a timing side-channel attack. This means an external entity could

Processed: Re: Bug#992693: bullseye-pu: package glibc/2.31-13+deb11u1

2021-09-27 Thread Debian Bug Tracking System
Processing control commands: > tags -1 + confirmed d-i Bug #992693 [release.debian.org] bullseye-pu: package glibc/2.31-13+deb11u1 Added tag(s) confirmed. > fixed 994042 2.32-3 Bug #994042 [libc6] libc6: debconf text fallback failed to accept input, had to be killed leading to broken

Bug#994457: r-cran-gnm autopkgtest needs to be adapted for lapack 3.10

2021-09-27 Thread Andreas Tille
Hi Heather, thanks a lot for your quick response. We do not have any deadline since Debian 11 was "just" released. Kind regards Andreas. On Mon, Sep 27, 2021 at 12:01:20PM +0100, Heather Turner wrote: > Hi Andreas, > > Thanks for forwarding this bug report and thanks to Sébastien for

Bug#995165: key-mapper: file conflict with unrelated package 'keymapper': /usr/lib/python3/dist-packages/keymapper/__init__.py

2021-09-27 Thread Andreas Beckmann
Package: key-mapper Version: 1.0.0-2 Severity: serious User: debian...@lists.debian.org Usertags: piuparts Hi, during a test with piuparts I noticed your package failed to install because it tries to overwrite other packages files. >From the attached log (scroll to the bottom...): Selecting

Bug#995164: golang-github-skip2-go-qrcode-dev: missing Breaks+Replaces: go-qrcode (<< 0.0~git20200617.da1b656)

2021-09-27 Thread Andreas Beckmann
Package: golang-github-skip2-go-qrcode-dev Version: 0.0~git20200617.da1b656-2 Severity: serious User: debian...@lists.debian.org Usertags: piuparts Hi, during a test with piuparts I noticed your package fails to upgrade from 'bullseye'. It installed fine in 'bullseye', then the upgrade to

Bug#995163: golang-github-jessevdk-go-flags-dev: missing Breaks+Replaces: golang-go-flags-dev (<< 1.4.0-3~)

2021-09-27 Thread Andreas Beckmann
Package: golang-github-jessevdk-go-flags-dev Version: 1.4.0-4 Severity: serious User: debian...@lists.debian.org Usertags: piuparts Hi, during a test with piuparts I noticed your package fails to upgrade from 'stable'. It installed fine in 'stable', then the upgrade to 'sid' fails because it

Bug#994457: r-cran-gnm autopkgtest needs to be adapted for lapack 3.10

2021-09-27 Thread Heather Turner
Hi Andreas, Thanks for forwarding this bug report and thanks to Sébastien for the detailed and accurate analysis. I will need to submit an update to CRAN, which should be feasible in the next week or two. Is there a deadline that I need to work to? Best wishes, Heather On Mon, Sep 27, 2021,

Bug#994786: marked as done (spectral-cube: autopkgtest needs update for new version of radio-beam: warning message changed)

2021-09-27 Thread Debian Bug Tracking System
Your message dated Mon, 27 Sep 2021 09:53:05 + with message-id and subject line Bug#994786: fixed in spectral-cube 0.5.0-4 has caused the Debian Bug report #994786, regarding spectral-cube: autopkgtest needs update for new version of radio-beam: warning message changed to be marked as done.

Bug#995132: marked as done (libhtml-treebuilder-libxml-perl: autopkgtest regression between 5 September 2021 and 25 September 2021)

2021-09-27 Thread Debian Bug Tracking System
Your message dated Mon, 27 Sep 2021 09:49:15 + with message-id and subject line Bug#995132: fixed in libhtml-treebuilder-libxml-perl 0.26-2 has caused the Debian Bug report #995132, regarding libhtml-treebuilder-libxml-perl: autopkgtest regression between 5 September 2021 and 25 September

Bug#995132: marked as pending in libhtml-treebuilder-libxml-perl

2021-09-27 Thread gregor herrmann
Control: tag -1 pending Hello, Bug #995132 in libhtml-treebuilder-libxml-perl reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at:

Processed: Bug#995132 marked as pending in libhtml-treebuilder-libxml-perl

2021-09-27 Thread Debian Bug Tracking System
Processing control commands: > tag -1 pending Bug #995132 [src:libhtml-treebuilder-libxml-perl] libhtml-treebuilder-libxml-perl: autopkgtest regression between 5 September 2021 and 25 September 2021 Added tag(s) pending. -- 995132: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=995132

Processed: tagging 995132

2021-09-27 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org: > tags 995132 + sid bookworm ftbfs Bug #995132 [src:libhtml-treebuilder-libxml-perl] libhtml-treebuilder-libxml-perl: autopkgtest regression between 5 September 2021 and 25 September 2021 Added tag(s) ftbfs, bookworm, and sid. > thanks Stopping

Bug#981902: marked as done (facterdb: autopkgtest failure)

2021-09-27 Thread Debian Bug Tracking System
Your message dated Mon, 27 Sep 2021 09:18:53 + with message-id and subject line Bug#981902: fixed in facterdb 1.8.0-1 has caused the Debian Bug report #981902, regarding facterdb: autopkgtest failure to be marked as done. This means that you claim that the problem has been dealt with. If

Processed: bug 995132 is forwarded to https://github.com/tokuhirom/HTML-TreeBuilder-LibXML/issues/16

2021-09-27 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org: > forwarded 995132 > https://github.com/tokuhirom/HTML-TreeBuilder-LibXML/issues/16 Bug #995132 [src:libhtml-treebuilder-libxml-perl] libhtml-treebuilder-libxml-perl: autopkgtest regression between 5 September 2021 and 25 September 2021 Set Bug

Processed: Re: Bug#994457: r-cran-gnm autopkgtest needs to be adapted for lapack 3.10

2021-09-27 Thread Debian Bug Tracking System
Processing control commands: > tags -1 upstream Bug #994457 [r-cran-gnm] r-cran-gnm autopkgtest needs to be adapted for lapack 3.10 Added tag(s) upstream. > forwarded -1 Heather Turner Bug #994457 [r-cran-gnm] r-cran-gnm autopkgtest needs to be adapted for lapack 3.10 Set Bug

Bug#994457: r-cran-gnm autopkgtest needs to be adapted for lapack 3.10

2021-09-27 Thread Andreas Tille
Control: tags -1 upstream Control: forwarded -1 Heather Turner Hi Heather, the Debian packaged gnm recieved a bug report about a failing test in connection with the upgrade to lapack 3.10.0 on the machine running the test. Please read the bug report below. We admit we need your help to solve

Bug#993198: gnome-shell-extension-system-monitor: does not declare compatibility with GNOME Shell 40

2021-09-27 Thread Leo "Costela" Antunes
On Fri, Sep 24, 2021 at 10:07 PM Samuel Henrique wrote: > Leo, from my side you're free to push your changes whenever you want. I will as soon as someone gives me access to the repo ;) Just requested access to the Gnome group, but that may take a while. > Let's try to coordinate things, feel

Bug#995150: openmpi: segfault in mca_io_romio_dist_MPI_File_iwrite_all

2021-09-27 Thread Drew Parsons
Source: openmpi Version: 4.1.2~rc1-2 Severity: serious Justification: FTBFS The new version of openmpi seems to be segfaulting in mca_io_romio321.so The segfault is found in nearly all arches in mpi4py tests, https://buildd.debian.org/status/package.php?p=mpi4py (it causes mpi4py to FTBFS) The

Bug#993441: marked as done (kleopatra: Creates unsafe ~/.gnupg when not already present)

2021-09-27 Thread Debian Bug Tracking System
Your message dated Mon, 27 Sep 2021 07:03:31 + with message-id and subject line Bug#993441: fixed in kleopatra 4:21.08.1-2 has caused the Debian Bug report #993441, regarding kleopatra: Creates unsafe ~/.gnupg when not already present to be marked as done. This means that you claim that the

Bug#995134: marked as done (dkms modules fail to build on 5.14.0, error: ‘TIF_IA32’ undeclared)

2021-09-27 Thread Debian Bug Tracking System
Your message dated Mon, 27 Sep 2021 06:33:58 + with message-id and subject line Bug#995134: fixed in openafs 1.8.8-1 has caused the Debian Bug report #995134, regarding dkms modules fail to build on 5.14.0, error: ‘TIF_IA32’ undeclared to be marked as done. This means that you claim that the

Bug#995018: marked as done (jupyter-server breaks jupyterlab-server autopkgtest: No module named 'anyio.to_thread')

2021-09-27 Thread Debian Bug Tracking System
Your message dated Mon, 27 Sep 2021 06:33:51 + with message-id and subject line Bug#995018: fixed in jupyter-server 1.11.0-1 has caused the Debian Bug report #995018, regarding jupyter-server breaks jupyterlab-server autopkgtest: No module named 'anyio.to_thread' to be marked as done. This