Bug#1071362: rpy2 segfaults in tests under Debian bulk rebuild

2024-05-18 Thread Dirk Eddelbuettel
On 18 May 2024 at 07:59, Dirk Eddelbuettel wrote: | | Hi Laurent, | | We a build issue in Debian found via bulk rebuilds. Which everything current | in 'unstable', rpy2 (version 3.5.16) segfaults in a test when embedding. | | Details are at https://bugs.debian.org/1071362 | | If you kee 1071

Bug#1071362: rpy2: FTBFS: rpy2/tests/rinterface/test_embedded_r.py s.......Fatal Python error: Segmentation fault

2024-05-18 Thread Dirk Eddelbuettel
On 17 May 2024 at 23:05, Santiago Vila wrote: | Dirk Eddelbuettel wrote: | > Is there a chance this could be spurious? | | Unlikely because it also happens here: | | https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/rpy2.html Ok, I will get in touch with Laurent. D

Bug#1071362: rpy2: FTBFS: rpy2/tests/rinterface/test_embedded_r.py s.......Fatal Python error: Segmentation fault

2024-05-17 Thread Dirk Eddelbuettel
Is there a chance this could be spurious? The R API is reasonably stable, including the part for embedding R (and I am upstream for a small project doing that from C++). rpy2 is also mature and stable. So could this be a one-off? Dirk -- dirk.eddelbuettel.com | @eddelbuettel |

Bug#1070840: r-cran-ff: autopkgtest regression with r-base 4.4.0

2024-05-10 Thread Dirk Eddelbuettel
On 10 May 2024 at 06:28, Dirk Eddelbuettel wrote: | | On 10 May 2024 at 10:54, Graham Inggs wrote: | | Source: r-cran-ff | | Version: 4.0.12+ds-1 | | Severity: serious | | X-Debbugs-Cc: Dirk Eddelbuettel | | User: debian...@lists.debian.org | | Usertags: regression | | | | Hi Maintainer

Bug#1070842: r-bioc-mutationalpatterns: autopkgtest regression with r-base 4.4.0

2024-05-10 Thread Dirk Eddelbuettel
On 10 May 2024 at 11:01, Graham Inggs wrote: | Source: r-bioc-mutationalpatterns | Version: 3.12.0+dfsg-1 | Severity: serious | X-Debbugs-Cc: Dirk Eddelbuettel | User: debian...@lists.debian.org | Usertags: regression | | Hi Maintainer | | r-bioc-mutationalpatterns' autopkgtest regresses when

Bug#1070843: r-bioc-s4vectors: autopkgtest regression with r-base 4.4.0

2024-05-10 Thread Dirk Eddelbuettel
On 10 May 2024 at 11:04, Graham Inggs wrote: | Source: r-bioc-s4vectors | Version: 0.40.2+dfsg-1 | Severity: serious | X-Debbugs-Cc: Dirk Eddelbuettel | User: debian...@lists.debian.org | Usertags: regression | | Hi Maintainer | | r-bioc-s4vectors' autopkgtest regresses when tested with r

Bug#1070841: r-bioc-iranges: autopkgtest regression with r-base 4.4.0

2024-05-10 Thread Dirk Eddelbuettel
On 10 May 2024 at 10:58, Graham Inggs wrote: | Source: r-bioc-iranges | Version: 2.36.0-1 | Severity: serious | X-Debbugs-Cc: Dirk Eddelbuettel | User: debian...@lists.debian.org | Usertags: regression | | Hi Maintainer | | r-bioc-iranges' autopkgtest regresses when tested with r-base 4.4.0

Bug#1070840: r-cran-ff: autopkgtest regression with r-base 4.4.0

2024-05-10 Thread Dirk Eddelbuettel
On 10 May 2024 at 10:54, Graham Inggs wrote: | Source: r-cran-ff | Version: 4.0.12+ds-1 | Severity: serious | X-Debbugs-Cc: Dirk Eddelbuettel | User: debian...@lists.debian.org | Usertags: regression | | Hi Maintainer | | r-cran-ff's autopkgtest regresses when tested with r-base 4.4.0 [1

Bug#1069842: rjava: FTBFS: /usr/bin/ld: cannot find -ldeflate: No such file or directory

2024-04-25 Thread Dirk Eddelbuettel
reassign 1069842 r-base thanks On 25 April 2024 at 18:27, Santiago Vila wrote: | Package: src:rjava | Version: 1.0-11-1 | Severity: serious | Tags: ftbfs | | Dear maintainer: | | During a rebuild of all packages in unstable, your package failed to build: Thanks for this. It is caused by the

Bug#1066403: R packages failing to build with missing -ltirpc are actually an issue in r-base

2024-03-13 Thread Dirk Eddelbuettel
-Depends to fix build issue from side effects of t64 transition (Closes: #1065216) -- Dirk Eddelbuettel Mon, 04 Mar 2024 08:54:45 -0600 I will take care of it in -3. Dirk -- dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org

Bug#1065216: r-base: recent libc6-dev change causes the xdr feature to be dropped

2024-03-04 Thread Dirk Eddelbuettel
On 1 March 2024 at 23:36, Aurelien Jarno wrote: | Source: r-base | Version: 4.3.3-1 | Severity: serious | Tags: ftbfs | Justification: fails to build from source (but built successfully in the past) | User: debian-gl...@lists.debian.org | Usertags: libtirpc-dev | | Dear maintainer, | |

Bug#1063320: gretl: NMU diff for 64-bit time_t transition

2024-02-28 Thread Dirk Eddelbuettel
On 29 February 2024 at 00:20, Steve Langasek wrote: | Dear maintainer, | | Please find attached a final version of this patch for the time_t | transition. This patch is being uploaded to unstable. | | Note that this adds a versioned build-dependency on dpkg-dev, to guard | against accidental

Bug#1062364: dieharder: NMU diff for 64-bit time_t transition

2024-02-28 Thread Dirk Eddelbuettel
On 28 February 2024 at 21:28, mwhud...@fastmail.fm wrote: | Dear maintainer, | | Please find attached a final version of this patch for the time_t | transition. This patch is being uploaded to unstable. | | Note that this adds a versioned build-dependency on dpkg-dev, to guard | against

Bug#1063320: gretl: NMU diff for 64-bit time_t transition

2024-02-07 Thread Dirk Eddelbuettel
On 6 February 2024 at 06:43, Steve Langasek wrote: | Source: gretl | Version: 2023c-2 | Severity: serious | Tags: patch pending sid trixie | Justification: library ABI skew on upgrade | User: debian-...@lists.debian.org | Usertags: time-t | | NOTICE: these changes must not be uploaded to

Bug#1062364: dieharder: NMU diff for 64-bit time_t transition

2024-02-07 Thread Dirk Eddelbuettel
On 1 February 2024 at 07:21, mwhud...@debian.org wrote: | Source: dieharder | Version: 3.31.1.4-1 | Severity: serious | Tags: patch pending | Justification: library ABI skew on upgrade | User: debian-...@lists.debian.org | Usertags: time-t | | Dear maintainer, | | As part of the 64-bit time_t

Bug#1060101: Boost 1.81 removal

2024-01-17 Thread Dirk Eddelbuettel
On 14 January 2024 at 06:49, Dirk Eddelbuettel wrote: | | FYI two days before you filed #1060101 I actually happened to have updated | r-cran-bh to 1.84.0 (upstream, which is me, went to the 1.84.0 version | released in December as Boost releases every four months) using 1.83: | |r-cran-bh

Bug#1060101: Boost 1.81 removal

2024-01-14 Thread Dirk Eddelbuettel
+b2 * debian/control: Set Build-Depends: to current R version * debian/control: Switch to virtual debhelper-compat (= 13) -- Dirk Eddelbuettel Wed, 10 Jan 2024 07:20:09 -0600 So this should sort itself out by itself in a matter of days. r-cran-bh is healthy: https

Bug#1059875: RM: rJava [i386] -- RoM: FTBFS as i386 builds no longer maintained upstream

2024-01-11 Thread Dirk Eddelbuettel
( Resending to now correctly-typed package r-cran-rcdklibs -- Dirk ) On 11 January 2024 at 07:09, Dirk Eddelbuettel wrote: | | Package: ftp.debian.org | Severity: normal | | The rJava package (source package 'rjava', binary package r-cran-rjava) no | longer builds on i386 as most

Bug#1059875: RM: rJava [i386] -- RoM: FTBFS as i386 builds no longer maintained upstream

2024-01-11 Thread Dirk Eddelbuettel
1 | source rjava | 1.0-10-1 | source Maintainer: Dirk Eddelbuettel --- Reason --- -- Checking reverse dependencies... # Broken Depends: libgoby-java: goby-java r-cran-rcdk: r-cran-rcdk r-cran-rcdklibs: r-cra

Bug#1059875: src:rjava: fails to migrate to testing for too long: FTBFS on i386

2024-01-02 Thread Dirk Eddelbuettel
(Adrian: Added you to CCs per suggestion of Paul.) Hi Paul, On 2 January 2024 at 21:00, Paul Gevers wrote: | Hi Dirk, | | On 02-01-2024 20:42, Dirk Eddelbuettel wrote: | > | The Release Team considers packages that are out-of-sync between testing | > | and unstable for more than 3

Bug#1059875: src:rjava: fails to migrate to testing for too long: FTBFS on i386

2024-01-02 Thread Dirk Eddelbuettel
On 2 January 2024 at 20:07, Paul Gevers wrote: | Source: rjava | Version: 1.0-6-1 | Severity: serious | Control: close -1 1.0-10-1 | Tags: sid trixie ftbfs | User: release.debian@packages.debian.org | Usertags: out-of-sync | | Dear maintainer(s), | | The Release Team considers packages

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-30 Thread Dirk Eddelbuettel
Hi Graham On 30 November 2023 at 07:54, Graham Inggs wrote: | Hi Dirk | | On Thu, 30 Nov 2023 at 00:51, Dirk Eddelbuettel wrote: | > Ping squared. | > | > If I don't hear from you I may just close this. I believe this (non-, to me) | > issue has been taken care of. If you thin

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-29 Thread Dirk Eddelbuettel
On 27 November 2023 at 08:27, Dirk Eddelbuettel wrote: | | Graham, | | Quick ping to ask where we are we on this? Matrix is in testing so can this | be closed? Ping squared. If I don't hear from you I may just close this. I believe this (non-, to me) issue has been taken care of. If you

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-27 Thread Dirk Eddelbuettel
Graham, Quick ping to ask where we are we on this? Matrix is in testing so can this be closed? Cheers, Dirk -- dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-20 Thread Dirk Eddelbuettel
Hi Graham, On 20 November 2023 at 12:13, Graham Inggs wrote: | On Sun, 19 Nov 2023 at 14:59, Dirk Eddelbuettel wrote: | > So it contains a patch by Mikael which had been applied _permitting Matrix | > 1.6-2_ to get to CRAN. So for this particular pair it was the other way around. | |

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-19 Thread Dirk Eddelbuettel
On 19 November 2023 at 09:59, Dirk Eddelbuettel wrote: | On 19 November 2023 at 13:49, Graham Inggs wrote: | | We don't believe only touching debian/changelog, or a binNMU, is | | sufficient. We were surprised that your r-cran-lme4 upload did not at | | least include: | | Depends: r-cran-matrix

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-19 Thread Dirk Eddelbuettel
Hi Graham, On 19 November 2023 at 13:49, Graham Inggs wrote: | On Tue, 14 Nov 2023 at 12:42, Dirk Eddelbuettel wrote: | > Doesn't 'normal' do that? | | No, only serious and above are considered RC [1] and also for migration. | | This week, Paul Gevers and I spent some time discussing w

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-18 Thread Dirk Eddelbuettel
I will not engage any more with debian-r. But this is now at the BTS so a clarification may be in order. This started as I had sent an email as a heads-up to fellow maintainers (via that mostly pointless list) informing them that their packages would exhibit a bug following a bug in package

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-17 Thread Dirk Eddelbuettel
On 14 November 2023 at 07:42, Dirk Eddelbuettel wrote: | | On 14 November 2023 at 12:26, Graham Inggs wrote: | | Hi Dirk | | | | On Tue, 14 Nov 2023 at 12:01, Dirk Eddelbuettel wrote: | | > Well that seems to be a) the wrong severity and b) the wrong package. | | | | Both are correct. We

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-14 Thread Dirk Eddelbuettel
On 14 November 2023 at 12:26, Graham Inggs wrote: | Hi Dirk | | On Tue, 14 Nov 2023 at 12:01, Dirk Eddelbuettel wrote: | > Well that seems to be a) the wrong severity and b) the wrong package. | | Both are correct. We do not want rmatrix to migrate and break | packages in testing. Does

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-14 Thread Dirk Eddelbuettel
On 14 November 2023 at 09:15, Graham Inggs wrote: | Source: rmatrix | Version: 1.6-2-1 | Severity: serious | X-Debbugs-Cc: debia...@lists.debian.org | | Hi Dirk | | I'm opening this bug as a place for discussion and to track the | affected packages. It can be closed once rmatrix and its |

Bug#1054921: [Quantlib-dev] Build error for quantlib-swig on mips64el

2023-10-30 Thread Dirk Eddelbuettel
On 30 October 2023 at 12:23, Luigi Ballabio wrote: | Hello Dirk, unfortunately I have no idea what can cause this — do you think it | possible that the size of the wrappers crossed some threshold and relocations | started to occur that weren't there before? Adrian (CC'ed) supplied a merge

Bug#1054921: Build error for quantlib-swig on mips64el

2023-10-29 Thread Dirk Eddelbuettel
The Debian package fails to build now on mipsel, a log is at [1]. The gist seems to be a relocation error: g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -O0 -g0 -mxgot --param ggc-min-expand=20 -DBOOST_NO_AUTO_PTR build/temp.linux-mips64-cpython-311/QuantLib/quantlib_wrap.o

Bug#1054921: quantlib-swig: FTBFS on mips64el

2023-10-28 Thread Dirk Eddelbuettel
On 28 October 2023 at 22:53, Sebastian Ramacher wrote: | Source: quantlib-swig | Version: 1.32-1 | Severity: serious | Tags: ftbfs | Justification: fails to build from source (but built successfully in the past) | X-Debbugs-Cc: sramac...@debian.org | |

Bug#1050432: rpy2: FTBFS on mips64el

2023-08-27 Thread Dirk Eddelbuettel
On 27 August 2023 at 18:44, YunQiang Su wrote: | Maybe there is something wrong with ffi. (In fact the complex support of mips | was added by me. ;) Hah. | I am looking for a way to use debug to debug the extensions. | If you have any documents, can you point it to me. I can help you with R,

Bug#1050432: rpy2: FTBFS on mips64el

2023-08-27 Thread Dirk Eddelbuettel
On 27 August 2023 at 14:09, YunQiang Su wrote: | Dirk Eddelbuettel 于2023年8月27日周日 00:15写道: | > | > | > Hi all, | > | > As the test failures for complex valued variables appeared to be systemic on | > the 'mips64el' platform, I buckled down, taught myself some Python ==:-) a

Bug#1050432: rpy2: FTBFS on mips64el

2023-08-26 Thread Dirk Eddelbuettel
Hi all, As the test failures for complex valued variables appeared to be systemic on the 'mips64el' platform, I buckled down, taught myself some Python ==:-) and conditioned the number of failing tests away via @pytest.mark.skipif(platform.machine() == 'mips64' and sys.byteorder ==

Bug#1050432: rpy2: FTBFS on mips64el

2023-08-24 Thread Dirk Eddelbuettel
Paul, Thanks for the hint. I was aware and had been meaning to bring this up with Laurent (upstream, now CCed). Laurent: I should have access to a 'porterbox' running mips64el if you have an idea about what may be going on here / have a branch to test. Paul: While I have you here, and as all

Bug#1049438: r-cran-rgdal: autopkgtest needs update for new version of r-cran-sp

2023-08-18 Thread Dirk Eddelbuettel
On 18 August 2023 at 13:58, Andreas Tille wrote: | Control: tags -1 upstream | Control: forwarded -1 Roger Bivand | | Hi Roger, | | the CI tests in Debian uncovered some conflict between recent rgdal and | version 2.0 of sp. As you either can see in the bug report that was | filed[1] or in a

Bug#1041556: What is the architecture name in R what we call armel/armhf

2023-08-17 Thread Dirk Eddelbuettel
On 17 August 2023 at 07:24, Graham Inggs wrote: | On Thu, 17 Aug 2023 at 05:52, Andreas Tille wrote: | > I tried to skip two tests in r-cran-checkmate with this patch[1] | > which is based on | > | > arch <- R.version$arch | > identical(arch, "i386") || identical(arch, "i686") ||

Bug#1028111: r-cran-clock: autopkgtest failure on 32bit

2023-08-12 Thread Dirk Eddelbuettel
The 'bug fix' applied to the _previous_ version of CRAN package clock, namely a somewhat 'wild' sed patching of a single ie # Ignore single test for i386 architecture. This is a workaround for bug #1024828 of r-cran-igraph if [ "$hostarch" = "i386" -o "$hostarch" = "armel" -o "$hostarch" =

Bug#1042889: vm breakage with Emacs 29

2023-08-02 Thread Dirk Eddelbuettel
On 2 August 2023 at 14:41, Ian Jackson wrote: | Dirk Eddelbuettel writes ("Re: vm breakage with Emacs 29"): | > On 2 August 2023 at 13:17, Ian Jackson wrote: | > | Hi. Since you were helpful with #1039105 "Fails to start with Emacs | > | 28" I thought I would dr

Bug#1038405: Bug#1037439: r-cran-rstan/armhf FTBFS with r-cran-bh 1.74

2023-08-01 Thread Dirk Eddelbuettel
On 31 July 2023 at 23:13, Adrian Bunk wrote: | On Mon, Jun 19, 2023 at 04:37:22PM +0300, Adrian Bunk wrote: | > On Tue, Jun 13, 2023 at 03:30:18PM -0500, Dirk Eddelbuettel wrote: | > > | > > On 13 June 2023 at 13:15, Steve Langasek wrote: | > > | Control: reassign -1 r

Bug#1042040: quantlib-swig: FTBFS: QuantLib/quantlib_wrap.cpp:9493:19: error: ‘LexicographicalView’ in namespace ‘QuantLib’ does not name a template type

2023-07-25 Thread Dirk Eddelbuettel
On 25 July 2023 at 23:05, Lucas Nussbaum wrote: | Source: quantlib-swig | Version: 1.30-2 | Severity: serious | Justification: FTBFS | Tags: trixie sid ftbfs | | Hi, | | During a rebuild of all packages in sid, your package failed to build | on amd64. I'll get on this -- it is lagging behind

Bug#1041738: src:lme4: fails to migrate to testing for too long: causes timeout in autopkgtests on i386

2023-07-23 Thread Dirk Eddelbuettel
On 23 July 2023 at 11:03, Dirk Eddelbuettel wrote: | Note that the mlmRev authors / maintainers are the same as / a subset of the | lme4 authors. They may have an idea. | | https://cran.r-project.org/package=mlmRev I just ran `R CMD check mlmRev_*tar.gz` on my amd64 (under Ubuntu 23.04

Bug#1041738: src:lme4: fails to migrate to testing for too long: causes timeout in autopkgtests on i386

2023-07-23 Thread Dirk Eddelbuettel
On 23 July 2023 at 15:07, Graham Inggs wrote: | Hi | | On Sun, 23 Jul 2023 at 13:11, Nilesh Patra wrote: | > How do you conclude that? | > The versions of affected packages are same in unstable and testing. They | > fail in i386 with a newer version of lme4. | | For what it's worth,

Bug#1041738: src:lme4: fails to migrate to testing for too long: causes timeout in autopkgtests on i386

2023-07-23 Thread Dirk Eddelbuettel
On 23 July 2023 at 18:42, Nilesh Patra wrote: | On Sun, 23 Jul 2023 07:15:09 -0500 Dirk Eddelbuettel wrote | > Is this is not an example of a release manager override? The affectect | > packages all work together in unstable and could migrate. | | How do you conclude that? | The ve

Bug#1041738: src:lme4: fails to migrate to testing for too long: causes timeout in autopkgtests on i386

2023-07-23 Thread Dirk Eddelbuettel
Paul, Is this is not an example of a release manager override? The affectect packages all work together in unstable and could migrate. Dirk -- dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org

Bug#1041738: src:lme4: fails to migrate to testing for too long: causes timeout in autopkgtests on i386

2023-07-22 Thread Dirk Eddelbuettel
On 22 July 2023 at 21:45, Paul Gevers wrote: | Source: lme4 | Version: 1.1-31-1 | Severity: serious | Control: close -1 1.1-34-1 | X-Debbugs-CC: debia...@lists.debian.org | Tags: sid trixie | User: release.debian@packages.debian.org | Usertags: out-of-sync | | Dear maintainer(s), | | The

Bug#1039721: r-base: 4.3 causes many autopkgtests to fail

2023-07-05 Thread Dirk Eddelbuettel
Control: severity -1 normal I am changing this back because a) there is no general bug in R 4.3.1, and there newer was there were a few packages requiring an update to the new graphics engine version (as the packages choose to call R_GE_checkVersionOrDie, it is coming from

Bug#1039721: r-base: 4.3 causes many autopkgtests to fail

2023-06-29 Thread Dirk Eddelbuettel
On 28 June 2023 at 17:39, Jeremy Bícha wrote: | Control: severity -1 serious | | On Wed, Jun 28, 2023 at 5:29 PM Dirk Eddelbuettel wrote: | > Feel free to change the severity back if you truly think it is that serious. | | Done. | | Feel free to close the bug once r-base is ready to migr

Bug#1039721: r-base: 4.3 causes many autopkgtests to fail

2023-06-28 Thread Dirk Eddelbuettel
severity 1039721 normal thanks Hi Jeremy, That is a false positive (more below) and a duplicate of #1039510; the discussion of the latter now continues on the debian-r list. On 28 June 2023 at 12:31, Jeremy Bícha wrote: | Source: r-base | Version: 4.3.1-1 | Severity: serious | | I'm copying

Bug#1039645: Seems we need a transition for r-base instead of lots of single bugs against single packages (Was: Bug#1039645: r-cran-epi: autopkgtest failure with r-base (4.3.1-1))

2023-06-28 Thread Dirk Eddelbuettel
On 28 June 2023 at 14:03, Andreas Tille wrote: | Am Wed, Jun 28, 2023 at 08:11:05AM +0200 schrieb Bas Couwenberg: | > 189s DLL requires the use of native symbols | | I wonder, whether all those bugs against single r-* packages are | sensible. Yes they are. Those are bugs in the packages

Bug#1039510: mvtnorm breaks r-cran-pammtools autopkgtest: missing Breaks and/or versioned (test) Depends?

2023-06-27 Thread Dirk Eddelbuettel
Hi Paul, On 27 June 2023 at 20:08, Paul Gevers wrote: | Hi Dirk, | | On 26-06-2023 22:21, Dirk Eddelbuettel wrote: | > I really appreciate the diligence and detail you put into this. | > | > But I would like to offer a simple shortcut. I am also CCing debian-r again | > as this

Bug#1039510: mvtnorm breaks r-cran-pammtools autopkgtest: missing Breaks and/or versioned (test) Depends?

2023-06-26 Thread Dirk Eddelbuettel
Hi Paul, I really appreciate the diligence and detail you put into this. But I would like to offer a simple shortcut. I am also CCing debian-r again as this has come up time and time again, is guaranteed to come up again for as long as combine autopkgtests with letting packages go stake.

Bug#1034683: r-base: new upstream release unintentionally uploaded to unstable

2023-06-21 Thread Dirk Eddelbuettel
Hi Philip, On 21 June 2023 at 20:15, Philip Rinn wrote: | Hi, | | could we please close this bug? We released bookworm some days ago and | propagating to testing should be fine now. [It blocks R packages to propagate to | testing currently.] Thanks for the reminder. I think we had informal

Bug#1036071: fixed in gsl 2.7.1+dfsg-4

2023-06-02 Thread Dirk Eddelbuettel
On 2 June 2023 at 20:57, Paul Gevers wrote: | Hi Dirk, | | On 02-06-2023 20:38, Dirk Eddelbuettel wrote: | > | Are you sure? I just diffed the source to see if I should unblock and | > | got this: | > | > I would appear I did NOT add that one line to debian/control !! Doh !! | &g

Bug#1036071: fixed in gsl 2.7.1+dfsg-4

2023-06-02 Thread Dirk Eddelbuettel
(with thanks to | +Andreas Beckmann for the suggestion) (Closes: #1036071) | + | + * debian/control: Set Standards-Version: to current version | + | + -- Dirk Eddelbuettel Sun, 14 May 2023 21:25:16 -0500 | + | gsl (2.7.1+dfsg-3) unstable; urgency=medium | | * debian/cont

Bug#1035428: Test suite issues due to new upstream version of r-core in unstable (Was: r-cran-shiny: broken symlink: ...)

2023-05-16 Thread Dirk Eddelbuettel
On 16 May 2023 at 20:13, Nilesh Patra wrote: | Uh, no. Maybe you misunderstood my suggestion. The t-p-u way was for Indeed! | r-base can continue to stay where it already is at the moment :) Yep. Dirk -- dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org

Bug#1035428: Test suite issues due to new upstream version of r-core in unstable (Was: r-cran-shiny: broken symlink: ...)

2023-05-16 Thread Dirk Eddelbuettel
On 16 May 2023 at 19:49, Nilesh Patra wrote: | On Tue, May 16, 2023 at 07:25:15PM +0530, Nilesh Patra wrote: | > I personally prefer "1" over 2 as it is less noise (and effort). | | On second thoughts, I think sending it via testing-proposed-updates | would be a better thing to do, as this case

Bug#1035428: Test suite issues due to new upstream version of r-core in unstable (Was: r-cran-shiny: broken symlink: ...)

2023-05-16 Thread Dirk Eddelbuettel
d to some better | regular expression. Nice catch and suggestion! On 16 May 2023 at 19:27, Nilesh Patra wrote: | On Tue, May 16, 2023 at 08:26:21AM -0500, Dirk Eddelbuettel wrote: | > Note that none of this affects the release. My recommendation is temporarily | > suspend the autopkgtest in

Bug#1035428: Test suite issues due to new upstream version of r-core in unstable (Was: r-cran-shiny: broken symlink: ...)

2023-05-16 Thread Dirk Eddelbuettel
On 16 May 2023 at 15:01, Andreas Tille wrote: | Hi, | | when fixing bug #1035428 I realised test suite issues with | | r-cran-thematic [1] |-> Error in `svglite_(filename, bg, width, height, pointsize, standalone, | always_valid)`: Graphics API version mismatch | |

Bug#1036071: libgsl27: please add Breaks: libgsl25 for smoother opgrades from bullseye

2023-05-14 Thread Dirk Eddelbuettel
On 15 May 2023 at 03:15, Andreas Beckmann wrote: | On 15/05/2023 02.58, Dirk Eddelbuettel wrote: | > | Yes thank you -- that sounds sensible. And we would then nag the release | > | team to get this out in the release? | | yes | | > Oh, and to be extra plain: upload to unstable as a

Bug#1036071: libgsl27: please add Breaks: libgsl25 for smoother opgrades from bullseye

2023-05-14 Thread Dirk Eddelbuettel
On 14 May 2023 at 19:50, Dirk Eddelbuettel wrote: | | On 15 May 2023 at 02:21, Andreas Beckmann wrote: | | Package: libgsl27 | | Version: 2.7.1+dfsg-3 | | Severity: serious | | Tags: patch | | User: debian...@lists.debian.org | | Usertags: piuparts | | | | Hi, | | | | libgsl25 from bullseye

Bug#1036071: libgsl27: please add Breaks: libgsl25 for smoother opgrades from bullseye

2023-05-14 Thread Dirk Eddelbuettel
On 15 May 2023 at 02:21, Andreas Beckmann wrote: | Package: libgsl27 | Version: 2.7.1+dfsg-3 | Severity: serious | Tags: patch | User: debian...@lists.debian.org | Usertags: piuparts | | Hi, | | libgsl25 from bullseye and libgsl27 from bookworm are not co-installable | due to their strict

Bug#1034683: r-base: new upstream release unintentionally uploaded to unstable

2023-04-22 Thread Dirk Eddelbuettel
Hi Simon, Thanks for the long and thoughtful and detailed reply. Just 'sitting back' will do just fine then. R releases annually in April, the 4.2.* series was just fine. We had an usual event in that R Core upstream asked (a first in ~25 years) to patch 4.2.2, hence the somewhat unusual

Bug#1034683: r-base: new upstream release unintentionally uploaded to unstable

2023-04-21 Thread Dirk Eddelbuettel
On 21 April 2023 at 10:51, Dirk Eddelbuettel wrote: | | On 21 April 2023 at 16:23, Simon McVittie wrote: | | Source: r-base | | Version: 4.3.0-1 | | Severity: serious | | Justification: maintainer presumably considers this version to be unsuitable for bookworm | | | | > r-base (4.3.

Bug#1034683: r-base: new upstream release unintentionally uploaded to unstable

2023-04-21 Thread Dirk Eddelbuettel
On 21 April 2023 at 16:23, Simon McVittie wrote: | Source: r-base | Version: 4.3.0-1 | Severity: serious | Justification: maintainer presumably considers this version to be unsuitable for bookworm | | > r-base (4.3.0-1) unstable; urgency=medium | > . | > * New upstream release (into

Bug#1032120: Upload of new upstream version before fix has migrated to testing (Was: Re: Bug#1032120: tiledb: uses atomic operations, but is not linked to libatomic)

2023-03-12 Thread Dirk Eddelbuettel
Why not wait a week on 2.15.0-1 which now 'Too young, only 4 of 10 days old'? Dirk -- dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org

Bug#1032120: tiledb: uses atomic operations, but is not linked to libatomic

2023-02-28 Thread Dirk Eddelbuettel
Hi Graham, On 28 February 2023 at 19:36, Graham Inggs wrote: | Hi Dirk | | Thanks for the quick upload! | Already got a successful build of tiledb-py on riscv64[1]. | | On Tue, 28 Feb 2023 at 17:14, Dirk Eddelbuettel wrote: | > TileDB upstream does everything in CMake (which I do not fu

Bug#1032120: tiledb: uses atomic operations, but is not linked to libatomic

2023-02-28 Thread Dirk Eddelbuettel
(Whoops typed this hours ago but apparently did not send from Emacs. --D.) Hi Graham, On 28 February 2023 at 10:49, Graham Inggs wrote: | Source: tiledb | Version: 2.14.1-1 | Severity: serious | Tags: ftbfs patch | Control: affects -1 src:tiledb-py | | Hi Dirk | | TileDB uses atomic

Bug#1029917: r-cran-pbkrtest: Depends: r-cran-lme4 (>= 1.1.31) but it is not going to be installed

2023-01-28 Thread Dirk Eddelbuettel
On 29 January 2023 at 01:58, Adrian Bunk wrote: | Package: r-cran-pbkrtest | Version: 0.5.2-1 | Severity: serious | | The following packages have unmet dependencies: | r-cran-pbkrtest : Depends: r-cran-lme4 (>= 1.1.31) but it is not going to be installed | | You might want to reconsider | |

Bug#1025835: tiledb-py: build-depends on libtiledb-doc

2022-12-10 Thread Dirk Eddelbuettel
On 10 December 2022 at 22:38, Nilesh Patra wrote: | On Sat, Dec 10, 2022 at 07:56:52AM -0600, Dirk Eddelbuettel wrote: | > | > On 10 December 2022 at 09:07, Peter Green wrote: | > | Source: tiledb-py | > | Version: 0.18.2-1 | > | Severity: serious | > | Justification: rc polic

Bug#1025835: tiledb-py: build-depends on libtiledb-doc

2022-12-10 Thread Dirk Eddelbuettel
On 10 December 2022 at 09:07, Peter Green wrote: | Source: tiledb-py | Version: 0.18.2-1 | Severity: serious | Justification: rc policy - "Packages must be buildable within the same release" | x-debbugs-cc: e...@debian.org | User: debian...@lists.debian.org | Usertags: edos-uninstallable | |

Bug#1017829: elpa-ess: emacs-gtk 28.1 install fails with installed elpa-ess

2022-10-15 Thread Dirk Eddelbuettel
Salut Seb, On 15 October 2022 at 10:16, Sébastien Villemot wrote: | Thank you for your feedback, and for the good work you put into this | package over the years! | | I’m going to take it over as you suggest. Awesome! As an Emacs user I look forward to many more years with ESS on Debian and

Bug#1017829: elpa-ess: emacs-gtk 28.1 install fails with installed elpa-ess

2022-10-14 Thread Dirk Eddelbuettel
Salut Seb, On 14 October 2022 at 20:10, Sébastien Villemot wrote: | Hi Dirk! | | Le dimanche 21 août 2022 à 09:17 -0500, Dirk Eddelbuettel a écrit : | > That is a problem, and it is somewhat know. ESS used to release every six or | > so months, now we are many years behind with no of

Bug#1011044: libtiledb2.8 needs Breaks+Replaces: libtiledb2.7

2022-05-15 Thread Dirk Eddelbuettel
On 16 May 2022 at 04:48, Adrian Bunk wrote: | Package: libtiledb2.8 | Version: 2.8.3-2 | Severity: serious | | Unpacking libtiledb2.8:amd64 (2.8.3-2) ... | dpkg: error processing archive /var/cache/apt/archives/libtiledb2.8_2.8.3-2_amd64.deb (--unpack): | trying to overwrite

Bug#1011012: tiledb-r FTBFS with tiledb 2.8.3

2022-05-15 Thread Dirk Eddelbuettel
Adrian, On 15 May 2022 at 13:38, Adrian Bunk wrote: | Source: tiledb-r | Version: 0.12.0-1 | Severity: serious | Tags: ftbfs | | https://buildd.debian.org/status/logs.php?pkg=tiledb-r=0.12.0-1%2Bb1 | | ... | g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I../inst/include/

Bug#931519: 931519 resolved

2022-01-28 Thread Dirk Eddelbuettel
On 29 January 2022 at 10:38, Paul Wise wrote: | Control: fixed -1 4.0.3 | | On Fri, 2022-01-28 at 20:07 -0600, Dirk Eddelbuettel wrote: | | > Per email by Graham from 14 Nov 2020 this has been resolved. | | Resolved upstream in 2020 but not in Debian until 2021. Correct. Graham (as aut

Bug#1003540: gsl-doc: please update to 2.7.1

2022-01-12 Thread Dirk Eddelbuettel
On 13 January 2022 at 02:29, Andreas Beckmann wrote: | On 11/01/2022 17.54, Dirk Eddelbuettel wrote: | > On 11 January 2022 at 17:31, Andreas Beckmann wrote: | > | Package: gsl-doc | > | Version: 2.6-2 | > | Severity: serious | > | > Why would that be a serious bug rather no

Bug#1003540: gsl-doc: please update to 2.7.1

2022-01-11 Thread Dirk Eddelbuettel
On 11 January 2022 at 17:31, Andreas Beckmann wrote: | Package: gsl-doc | Version: 2.6-2 | Severity: serious Why would that be a serious bug rather normal or even minor? It's a bit of a manual process becuase of the dfsg dance and manual ops. And there generally is not that much that changes

Bug#1002525: r-cran-tmb: autopkgtest needs update for new version of rmatrix: Package version inconsistency detected.

2021-12-25 Thread Dirk Eddelbuettel
Hi Nilesh, On 26 December 2021 at 00:20, Nilesh Patra wrote: | control: reassign -1 r-cran-tmb/1.7.22-1 | | Hi Dirk, | | On Thu, 23 Dec 2021 14:30:10 -0600 Dirk Eddelbuettel wrote: | > passfail | > | rmatrixfrom testing1.4-0-1 |

Bug#1002525: r-cran-tmb: autopkgtest needs update for new version of rmatrix: Package version inconsistency detected.

2021-12-23 Thread Dirk Eddelbuettel
On 23 December 2021 at 20:03, Paul Gevers wrote: | Source: r-cran-tmb | Version: 1.7.22-1 | Severity: serious | X-Debbugs-CC: debian...@lists.debian.org, rmat...@packages.debian.org | Tags: sid bookworm | User: debian...@lists.debian.org | Usertags: needs-update | Control: affects -1 src:rmatrix

Bug#998230: gsl-doc: LaTeX Error: File `tgtermes.sty' not found.

2021-11-01 Thread Dirk Eddelbuettel
On 1 November 2021 at 12:38, Andreas Beckmann wrote: | Source: gsl-doc | Version: 2.6-1 | Severity: serious | Tags: ftbfs sid bookworm | Justification: fails to build from source | | Hi, | | gsl-doc cannot be built any longer in sid: | | Latexmk: applying rule 'pdflatex'... | This is pdfTeX,

Bug#993324: libgsl25: ABI breakage: removed symbol gsl_linalg_QR_TR_decomp

2021-10-24 Thread Dirk Eddelbuettel
On 24 October 2021 at 11:38, Sebastian Ramacher wrote: | On 2021-10-23 19:44:49 -0500, Dirk Eddelbuettel wrote: | > | > I have now 'patched' the upstream setting of GSL_AGE, this results (as kindly | > analysed by Sebastian) in new sonames '26' so I prepared a new version which | &g

Bug#993324: libgsl25: ABI breakage: removed symbol gsl_linalg_QR_TR_decomp

2021-10-23 Thread Dirk Eddelbuettel
I have now 'patched' the upstream setting of GSL_AGE, this results (as kindly analysed by Sebastian) in new sonames '26' so I prepared a new version which just went out to unstable. Unless I am mistaken, I need to get the release team on board for a proper transition. Correct? Dirk --

Bug#993324: libgsl25: ABI breakage: removed symbol gsl_linalg_QR_TR_decomp

2021-10-16 Thread Dirk Eddelbuettel
On 16 October 2021 at 17:50, Sebastian Ramacher wrote: | On 2021-10-15 13:54:07 -0500, Dirk Eddelbuettel wrote: | > | > On 15 October 2021 at 20:35, Sebastian Ramacher wrote: | > | On 2021-10-15 10:38:48 -0500, Dirk Eddelbuettel wrote: | > | > | > | > Turns out this was fu

Bug#993324: libgsl25: ABI breakage: removed symbol gsl_linalg_QR_TR_decomp

2021-10-15 Thread Dirk Eddelbuettel
On 15 October 2021 at 20:35, Sebastian Ramacher wrote: | On 2021-10-15 10:38:48 -0500, Dirk Eddelbuettel wrote: | > | > Turns out this was fully my fault. The 2.7 release sets the SO number to 26, | > and I didn't use that. | | No, it doesn't. gsl 2.7 has current=26 and age=1

Bug#993324: libgsl25: ABI breakage: removed symbol gsl_linalg_QR_TR_decomp

2021-10-15 Thread Dirk Eddelbuettel
Turns out this was fully my fault. The 2.7 release sets the SO number to 26, and I didn't use that. So a new package will be forthcoming, and likely need a transition. That means I should upload to experimental first, right, to then request the transition? (I'll read up on it later today as a

Bug#993324: libgsl25: ABI breakage: removed symbol gsl_linalg_QR_TR_decomp

2021-10-15 Thread Dirk Eddelbuettel
Graham, On 15 October 2021 at 13:34, Graham Inggs wrote: | > Yes. And I follow upstream. They didn't change :-/ | | Right, so please speak to your upstream. Dropping (or renaming) a Done. Looks like a 2.8 release is coming, so maybe the soname gets cleaned up there and we get to do (yet

Bug#993324: libgsl25: ABI breakage: removed symbol gsl_linalg_QR_TR_decomp

2021-10-14 Thread Dirk Eddelbuettel
On 14 October 2021 at 23:20, Sebastian Ramacher wrote: | On 2021-10-14 15:52:03 -0500, Dirk Eddelbuettel wrote: | > | > Hi Sebastian, | > | > On 14 October 2021 at 22:46, Sebastian Ramacher wrote: | > | Hi Dirk | > | | > | On 2021-08-30 16:27:49 -0500, Di

Bug#993324: libgsl25: ABI breakage: removed symbol gsl_linalg_QR_TR_decomp

2021-10-14 Thread Dirk Eddelbuettel
Hi Sebastian, On 14 October 2021 at 22:46, Sebastian Ramacher wrote: | Hi Dirk | | On 2021-08-30 16:27:49 -0500, Dirk Eddelbuettel wrote: | > | > On 30 August 2021 at 23:42, Niko Tyni wrote: | > | Package: libgsl25 | > | Version: 2.7+dfsg-2 | > | Control: affects -1 l

Bug#996451: src:gsl: fails to migrate to testing for too long: unresolved RC bug (found by autopkgtest breakage)

2021-10-14 Thread Dirk Eddelbuettel
On 14 October 2021 at 10:55, Paul Gevers wrote: | Source: gsl | Version: 2.6+dfsg-2 | Severity: serious | Control: close -1 2.7+dfsg-2 | Tags: sid bookworm | User: release.debian@packages.debian.org | Usertags: out-of-sync | | Dear maintainer(s), | | The Release Team considers packages

Bug#993750: rgtk2: FTBFS on s390x: smoke-test failure: caught segfault

2021-09-14 Thread Dirk Eddelbuettel
Hi Philipp, Hi Simon, If we have no resolution on this I will have no other way than to re-upload r-cran-rgtk2 with a build exclusion for s390 as I now have an autoremoval notice for it (and another package I look after than depends on it). Or do we have other/better options? Dirk --

Bug#993750: rgtk2: FTBFS on s390x: smoke-test failure: caught segfault

2021-09-06 Thread Dirk Eddelbuettel
On 6 September 2021 at 09:39, Simon McVittie wrote: | On Sun, 05 Sep 2021 at 20:04:55 -0500, Dirk Eddelbuettel wrote: | > Please explain what a smoke-test failure is. | | Sorry, I thought this was a common term. | | A smoke-test for hardware: plug in the device and see whether smoke | co

Bug#993750: rgtk2: FTBFS on s390x: smoke-test failure: caught segfault

2021-09-05 Thread Dirk Eddelbuettel
Also: No other R packages here. Maybe something off with gtk2? Build-Depends: debhelper (>= 10), dh-r (>= 20180615), \ r-base-dev (>= 3.6.1), libgtk2.0-dev (>= 2.10.12), \ libglade2-dev, libpango1.0-dev, libcairo2-dev Dirk -- https://dirk.eddelbuettel.com | @eddelbuettel |

Bug#993750: rgtk2: FTBFS on s390x: smoke-test failure: caught segfault

2021-09-05 Thread Dirk Eddelbuettel
On 6 September 2021 at 00:46, Simon McVittie wrote: | Source: rgtk2 | Version: 2.20.36-2 | Severity: serious | Tags: ftbfs bookworm sid | Justification: fails to build from source (but built successfully in the past) | X-Debbugs-Cc: debian-s...@lists.debian.org | User:

Bug#993324: libgsl25: ABI breakage: removed symbol gsl_linalg_QR_TR_decomp

2021-08-30 Thread Dirk Eddelbuettel
On 30 August 2021 at 23:42, Niko Tyni wrote: | Package: libgsl25 | Version: 2.7+dfsg-2 | Control: affects -1 libmath-gsl-perl | Severity: serious | | gsl 2.7 broke libmath-gsl-perl on runtime, as seen in the autopkgtest regressions: | |not ok 7 - use Math::GSL::Matrix; | |#

Bug#980809: rmatrix: breaks autopkgtest of r-cran-glmmtmb on s390x

2021-04-09 Thread Dirk Eddelbuettel
On 8 April 2021 at 11:29, Graham Inggs wrote: | Control: forwarded -1 https://deb.li/6f4z | | TMB upstream have submitted a bug report [1] to R-forge. | | > Headers need update corresponding to new SuiteSparse version 5.7.1 | > | > SuiteSparse was recently updated from version 4.2.1 to 5.7.1,

Bug#980809: rmatrix: breaks autopkgtest of r-cran-glmmtmb on s390x

2021-03-09 Thread Dirk Eddelbuettel
On 9 March 2021 at 14:26, Graham Inggs wrote: | Control: tags -1 - fixed-upstream + upstream | Control: notforwarded -1 | | | >From TMB upstream [1]: | | > Digging a bit deeper I found that after calling | > | > M_cholmod_factorize_p(A, mm, (int*)NULL, 0 /*fsize*/, f, ) | > | > the

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