Bug#984243: Help: mothur: ftbfs with GCC-11

Hi all, The problem can be fixed following these steps: 1. Revert the commit ff8928540e0d720b8a08ee4227c1bbadc2c1e733 (now, that is the last commit). 2. Apply this patch: >--- a/Makefile >+++ b/Makefile >@@ -118,8 +118,8 @@ endif ># > OBJECTS=$(patsubst %.cpp,%.o,$(wildcard $(addsuffix *.cpp,$

Bug#976254: Something for our Advent calendar (Was: Bug#976254: rnahybrid: Does not build from source "multiple definition of")

o be placed in a common block, __attribute__((__common__)) can be used to force > that behavior even in code compiled without -fcommon. As a workaround, legacy C code where all tentative definitions should be placed into a common block can be compiled with -fcommon. Regards, Hamid Nassiby On Wed,

Bug#956136: Some investigations about bug (956136) nanopolish: FTBFS (undefined references)

causes the problem. [1]:https://salsa.debian.org/med-team/minimap2.git Bests, Hamid Nassiby From 5aa0491a6159895cdb0925617858cbca68c9e834 Mon Sep 17 00:00:00 2001 From: Hamid Nassiby Date: Thu, 9 Apr 2020 23:01:48 +0430 Subject: [PATCH] Remove -flto flag --- debian/patches/addLTO.patch | 30

Bug#956136: Some investigations about bug (956136) nanopolish: FTBFS (undefined references)

resolution to the bug. Please CC me in any response since I am not subscribed to the list. [1]: https://snapshot.debian.org/package/minimap2/ Best Regards, Hamid Nassiby