Yes it would be great to have bugs fixed in Debian too, especially if they get
reported on Debian systems... as for this particular one I consider it a
feature :-)
Keep us updated on what you figure out
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On Sat, 09 Mar 2013, Julian Taylor wrote:
DEBIAN_FRONTEND=readline
apt-get install matlab-support
Location of MATLAB installation(s): ...
entering an empty string does not cancel the prompt.
Other frontends are probably ok, they offer a cancel option.
and now I started to wonder on what is
On Sat, 09 Mar 2013, Michael Hanke wrote:
entering an empty string does not cancel the prompt.
Other frontends are probably ok, they offer a cancel option.
I can't replicate this. I installed the package, the prompt comes up, I
press Ctrl-C and I am back at the prompt.
yeah
On Sat, 09 Mar 2013, Julian Taylor wrote:
yeah -- as I just wrote, Ctrl-C works on the main machine but is of no
effect in chroot (tried on our neurohydra in nd+wheezy chroot)
we have a few reports in ubuntu of uninteruptable prompts:
oops
thanks for the report... testing following fix:
set -e; for v in $(PY3VERS); do \
[ -d $(CURDIR)/debian/python3-mpi4py/usr/include/python$$v ] || \
- mkdir -p $(CURDIR)/debian/python3-mpi4py/usr/include/python$$v; \
- dh_link -ppython3-mpi4py
thank you Luca for the details -- I will review copyrights for the
next upload.
On Thu, 14 Feb 2013, Luca Falavigna wrote:
Source: pandas
Version: 0.10.1-1
Severity: serious
Tags: sid
Some copyright information are missing:
* pandas/io/auth.py is licensed Apache-2.0
*
) with
libgamin0 0.1.10-4.1 -- and haven't had any problems
On Tue, 01 Jan 2013, Adam D. Barratt wrote:
On Wed, 2012-08-29 at 20:58 -0400, Yaroslav Halchenko wrote:
Until recently libgamin0 got patched (see #542361), it was barely
functional and could lead to any dependent software
Package: python-nipype
Version: 0.5.3-2
Severity: serious
Tags: upstream
Justification: fails to build from source
WARNING: Empty - nipype.interfaces.ants.base
Traceback (most recent call last):
File ../tools/build_interface_docs.py, line 54, in module
docwriter.write_api_docs(outdir)
On Sun, 02 Dec 2012, Ivo De Decker wrote:
On Fri, May 18, 2012 at 08:34:00PM -0400, Yaroslav Halchenko wrote:
known issue of compatibility with recently uploaded nibabel 1.2.0...
Will be fixed with an upcoming upstream release I am waiting for...
otherwise (if doesn't come soon) I
Thanks! if interested -- re-upload without delay!
On Sat, 03 Nov 2012, Michael Gilbert wrote:
control: tag -1 patch
Hi, I've uploaded an nmu fixing these issues to delayed/5. Please see
attached patch.
Best wishes,
Mike
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although patch should also take care about Hurd to be complete if would
build there nicely... or better just remove that conditioning
On Sat, 03 Nov 2012, Yaroslav Halchenko wrote:
Thanks! if interested -- re-upload without delay!
On Sat, 03 Nov 2012, Michael Gilbert wrote:
control: tag -1
Package: python-h5py
Version: 2.0.1-2+b1
Severity: serious
otherwise h5py is not usable with libhdf5 from experimental:
$ acpolicy python-h5py
python-h5py:
Installed: 2.0.1-2+b1
Candidate: 2.0.1-2+b1
Version table:
*** 2.0.1-2+b1 0
900 http://debian.lcs.mit.edu/debian/ wheezy/main
I believe it is more of -- if it builds (again) -- it is cool and should
keep building from them on.
It used to build on mips, but then became I believe too heavy for the
architecture, so full build started to fail... may be eventually it
would start building again no problem there.
On Fri, 07
Until recently libgamin0 got patched (see #542361), it was barely
functional and could lead to any dependent software to malfunction.
Because of the fix I can guess that your issue might have been fixed as
well. Is there a chance, Benny, you could give libgamin0 0.1.10-4.1
(available in wheezy
fixed 666066 mpich2/1.4.1-4
thanks
I believe it needs prefix with source package name and probably because
of that bug is currently still listed on
http://bugs.debian.org/release-critical/other/testing.html
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retitle 684822 Failed unittests due to non-functioning multiprocessing
thanks
Hi Lucas,
could you double-check if you had /dev/shm available in the build
environment?multiprocessing module requires it for functioning
On Tue, 14 Aug 2012, Lucas Nussbaum wrote:
Source: nipype
Version:
the same here -- /dev/shm is the cause... AFAIK all build hosts have
/dev/shm available so I never encountered similar problems before from
them.
On Tue, 14 Aug 2012, Lucas Nussbaum wrote:
Source: joblib
Version: 0.6.4-1
Severity: serious
Tags: wheezy sid
User: debian...@lists.debian.org
severity 684531 important
tags 684531 +more-info
thanks
I just built it fine using cowbuilder in up-to-date amd64 wheezy and sid
environments... so I guess this failure is somehow specific to your
setup... full build log and build-depends versioning information would
be of help. meanwhile, since
my reference to
,---
| e.g. I was just suggested that the fix for
| https://networkx.lanl.gov/trac/ticket/737
| which was fixed right before 1.7 release might be the one causing hard to
| reproduce (stopped failing for me again) FTBFS of nipype:
|
and here we go -- was my mistake of mixing up two patch sets. If upload
of 1.7 official release to wheezy is impossible, please include the
commit 9ebe087b8bbcdeee3051e07cacd05fa07436c16e (attached, thanks Satra
once again for pointing it out) which resolves the FTBFS of
nipype.
Best regards,
I am aware of this (as of FTBFS of ants on mipsel and s390)
I have filed for removal of ants from those archs for now:
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=683086
On Fri, 27 Jul 2012, Luca Falavigna wrote:
Source: ants
Version: 1.9.2+svn680.dfsg-4
Severity: serious
my guess is that it needs overrides for dh_python* calls like I did
recently for cython:
override_dh_python2:
dh_python2 -pcython
override_dh_python3:
dh_python3 -pcython3
On Sat, 28 Jul 2012, Jakub Wilk wrote:
Package: ipython
Version: 0.13-1
Severity: serious
If you rebuild
Package: python-scipy
Version: 0.10.1+dfsg1-3
Severity: serious
Tags: patch upstream
Justification: fails to build from source (but built successfully in the past)
I believe I have spotted it even before skimage FTBFSs:
https://buildd.debian.org/status/package.php?p=skimage
e.g.
On Sun, 15 Jul 2012, Jakub Wilk wrote:
just tried to build again (up to date sid chroot via cowbuilder on
amd64 box) -- went just fine. Is it reproducible for you?
I tried on a different machine: it failed the same way.
I thought that I have the worst karma... heh -- good to feel not being
just tried to build again (up to date sid chroot via cowbuilder on amd64
box) -- went just fine. Is it reproducible for you?
Any peculiarities of the system where it failed?
- architecture (kfreebsd's would lack functional multiprocessing)
- free space under /tmp
- network access?
- anything
On Thu, 12 Jul 2012, Denis Laxalde wrote:
BTW -- there is a bulk of possibly related unittests failures on s390x (if
only
someone was brave enough to take care about
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=678546), e.g. (a piece
of diff from output on s390)...
Ok, scipy is
-cast]
On Thu, 12 Jul 2012, Denis Laxalde wrote:
tags 681270 -moreinfo
thanks
Yaroslav Halchenko wrote:
BTW -- there is a bulk of possibly related unittests failures on s390x (if
only
someone was brave enough to take care about
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=678546), e.g
that was it -- assuring 'int' storage to be passed instead of npy_intp
(which is long int on s390x and int on s390) resolves this issue...
now I wonder what would be the cleanest patch ;-) (also running
unittests with this fix to see how many tests get fixed)
On Thu, 12 Jul 2012, Yaroslav
On Thu, 12 Jul 2012, Denis Laxalde wrote:
that was it -- assuring 'int' storage to be passed instead of npy_intp
(which is long int on s390x and int on s390) resolves this issue...
Good to know. fitpack (interpolate) might also benefit from this.
may be -- at least there were no gcc warnings
Package: python-scipy
Version: 0.10.1+dfsg1-3
Severity: serious
Justification: fails to build from source (but built successfully in the past)
Please see attached a somewhat minimalistic code to reproduce the
problem.
it fails only on s390x -- fine on s390 and any other architecture/port where
as
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=673987#10
described, version in squeeze (1.0.1) is not effected and no action
should be done for current stable release.
or am I missing the point here?
On Mon, 09 Jul 2012, Jonathan Wiltshire wrote:
Dear maintainer,
Recently you fixed one
forcemerge 679128 648061
severity 679128 serious
thanks
Since this resolved issues for Python (see #648061) which caused FTBFS
of some packages on kfreebsd platforms, raising severity a bit and
forcemerging 648061 into 679128
Thanks!
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Package: fop
Version: 1:1.0.dfsg2-6
Severity: serious
Justification: fails to build from source
It might be reincarnation of #580333 which was supposedly fixed.
Now, comedilib documentation fails to build on mips (only):
On Tue, 03 Jul 2012, Barry Warsaw wrote:
We can easily link bugs in Launchpad to the related bug in Debian, but that's
about it.
N.B. Ideally, I am as a user report bugs in Debian using reportbug, and then
the mighty Maintainer either fixes them himself or forwards upstream
(i.e. LP). Who
Source: scikit-learn
Version: 0.11.0-1
Severity: grave
Tags: patch
see
https://buildd.debian.org/status/fetch.php?pkg=scikit-learnarch=armelver=0.11.0-1stamp=1337042722
https://buildd.debian.org/status/fetch.php?pkg=scikit-learnarch=mipselver=0.11.0-1stamp=1336600303
Fixes are in packaging GIT...
Thank you Andrew! I have uploaded 0.7.4-1 to unstable -- now the
job would be to persuade release team to allow it to enter wheezy ;-)
On Tue, 03 Jul 2012, Andrew Davison wrote:
OK, all the unit tests now pass on a fresh install of Debian Wheezy
(which has NumPy 1.6.2), as well as on Ubuntu
Package: python-numpy
Version: 1:1.6.2-1
Severity: serious
Tags: upstream
I was troubleshooting pynn FTBFS
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=669466
and one of the recently failed unittests was due to following regression:
$ python -c import numpy; print numpy.__version__; print
ok -- bug bisected to be fixed in
$ PYTHONPATH=$PWD python -c import numpy; print numpy.__version__; print
numpy.array([('a', 1), ('b', 9.99)])
1.7.0.dev-91f87e1
[['a' '1']
['b' '9.99']]
but
Package: python-mode
Version: 1:6.0.10-1
Severity: grave
Due to popularity of ipython and the purpose of python-mode to provide means
for interactive work with python code within emacs I consired this bug
important for the most of the users of python-mode (thus grave).
In ipython shell ran by
if python-mode.el is affected, please open a ticket also at
https://bugs.launchpad.net/python-mode
isn't python-mode.el belonging to python-mode package the one
responsible for setting up ipython shell comint mode??? (sorry, I just
do not know those details)
Barry, I thought you had some handy
Hall, Hinman Box 6207, Hanover, NH 03755
Phone: +1 (603) 646-9834 Fax: +1 (603) 646-1419
WWW: http://www.linkedin.com/in/yarik
From 70295461024cc95709ae214b96aa4caa9c225ae9 Mon Sep 17 00:00:00 2001
From: Yaroslav Halchenko deb...@onerussian.com
Date: Mon, 2 Jul 2012 11
Just for the reference, as I described in #648061 it is a regression in
python2.6-2.7, Debian specific. Patch for Python is submitted but not
sure if it shouldn't be fixed in procps, waiting for the feedback
Cheers,
On Sat, 23 Jun 2012, Christoph Egger wrote:
Package: src:statsmodels
, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
Phone: +1 (603) 646-9834 Fax: +1 (603) 646-1419
WWW: http://www.linkedin.com/in/yarik
From: Yaroslav Halchenko deb...@onerussian.com
Subject: Fix path to Debian/kFreeBSD specific path to sysctl
Not sure yet
;-) Thank you Touko -- mixed up in a rush -- I will fix up the changelog
entry and it will be in place in the next upload
On Thu, 21 Jun 2012, Touko Korpela wrote:
Looks like patch came from Nicolas Bourdaud, not from Lucas Nussbaum.
--
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Postdoctoral Fellow, Department of
Package: python-networkx
Version: 1.7~rc1-1
Severity: serious
I was about to upload a fix for #664944 but the build failed due to error
while running unittests:
==
ERROR: Failure: ValueError (need more than 0 values to unpack)
I wonder if smth like this would work (didn't even look what the graph
is):
python -c import pickle, networkx as nx;
nx.to_scipy_sparse_matrix(pickle.load(open('/tmp/graph2debug.dat')))
and see attachment
On Mon, 18 Jun 2012, Sandro Tosi wrote:
Hello,
can you please provide a minimal test
Source: biosig4c++
Version: 1.3.0-2
Severity: grave
just to hold biosig4c++ 1.3.0 in unstable untill minor set of build-dependees
(openwalnut, sigviewer) is reeady
-- System Information:
Debian Release: wheezy/sid
APT prefers testing
APT policy: (900, 'testing'), (600, 'unstable'), (300,
Thanks
known issue of compatibility with recently uploaded nibabel 1.2.0...
Will be fixed with an upcoming upstream release I am waiting for...
otherwise (if doesn't come soon) I will patch
Cheers,
On Sat, 19 May 2012, Samuel Thibault wrote:
Source: nipy
Version: 0.1.999-2
Severity: serious
Hi Varun,
thanks for taking care and adopting my patch. now it got accepted
upstream and I wanted to mention that they refactored few other
comparisons -- so it might be wise for Debian to adopt that patch as
well (attaching).
Cheers
On Fri, 20 Apr 2012, Debian Bug Tracking System wrote:
FYI apparently scipy 0.10 is not fully backward compatible with prev
API (e.g. broke nitime). I guess due to
__all__ dicts have been added to all modules, which has cleaned up the
namespaces (particularly useful for interactive work).
tags 671978 +fixed-upstream
forwarded 671978 https://github.com/nipy/nitime/pull/96
thanks
Great! Marking as such ;-) (btw anyone could tag bug reports in debian,
see above and http://www.debian.org/Bugs/server-control for details)
On Tue, 08 May 2012, Ariel Rokem wrote:
Yeah - for the
Hi Dominique,
I wonder if there were any movement in upstream/debian packaging of
slicer4? slicer3 is uninstallable in sid as well ATM :-/
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Postdoctoral Fellow, Department of Psychological and Brain Sciences
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover,
Package: mricron
Version: 0.20110812.1~dfsg.1-1
Severity: grave
As reported on neurodebian-users mailing list against experience on Ubuntu
12.04:
http://lists.alioth.debian.org/pipermail/neurodebian-users/2012-May/000408.html
and now verified on Debian wheezy/sid mix -- it stalls upon start.
of Soeren.
I don't think a binNMU makes sense, looking at the state of
https://buildd.debian.org/status/package.php?p=shogun
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and the new API.
* Adjust for API change in Shogun 1.0.0 (closes: #655643).
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Source: shogun-python-modular
Version: 1.1.0-4
Severity: grave
$ sudo apt-get install shogun-python-modular
[sudo] password for yoh:
Reading package lists... Done
Building dependency tree
Reading state information... Done
Some packages could not be installed. This may mean that you have
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in a virtualbox
On Thu, 05 Apr 2012, Lucas Nussbaum wrote:
On 04/04/12 at 17:06 -0400, Yaroslav Halchenko wrote:
thanks for checking it out -- how many cores that instance has?
one... :)
Lucas
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... sent pull request
https://github.com/scipy/scipy/pull/187
patch is attached here as well
so next I guess is to make it return sensible values for the .fit as it did
before? ;)
On Fri, 30 Mar 2012, Yaroslav Halchenko wrote:
well -- imho it should have not even got to that point if e is
NaN. Just
d'oh -- now patch is attached
On Fri, 30 Mar 2012, Yaroslav Halchenko wrote:
patch is attached here as well
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ah -- and found that you adopted it already:
https://github.com/statsmodels/statsmodels/issues/109
https://github.com/statsmodels/statsmodels/commit/590bd6238d7d2538a557ce664ee90f4b9116449c
cool -- thanks ;)
On Thu, 29 Mar 2012, Yaroslav Halchenko wrote:
d'oh forgotten about it -- thanks
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I wondered if there is any progress on this issue
Cheers
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Package: libvtk5-dev
Version: 5.8.0-7
Severity: grave
If I am not mistaken binNMU should address this issue. it is just that
libvtk5.8=5.8.0-7 depends on libnetcdfc++5 which was superseeded by
libnetcdfc++4 ;-) please request binNMU if I am correct
# apt-get install libvtk5-dev libnetcdf-dev
Hi Jonathan,
Thank you for helping out with stimfit. Unfortunately your NMU changes
are not inline with our goal behind stimfit packaging: we are trying to
maintain packaging seamlessly backportable into older debian and ubuntu
releases:
http://neuro.debian.net/pkgs/sigviewer.html
shows that
-- would you like to join the team (Debian science) and help with
maintenance of pytables in Debian? ;)
;)
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to the debian package ASAP.
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what would not work? disabling blosc? it would work I bet and thanks
for testing on a sparc64 system
I just hoped that someone (upstream?) could find a chance to
resolve it properly ;)
On 03/03/2012 09:47 PM, Yaroslav Halchenko wrote:
are going across platforms? or should we may be adopt
.
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I think other should be just fine
Give it a try and you will know for sure ;)
Mathieu Bautista mbauti...@ircf.fr wrote:
Hello,
May I override safely my fail2ban squeeze package with a newer deb
package like :
wget
http://ftp.fr.debian.org/debian/pool/main/f/fail2ban/fail2ban_0.8.6-2_all.deb
it should have worked
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to unpack
| make[3]: *** [generate-stamp] Error 1
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I'm investigating now ...
Cheers,
-Steve
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Package: python-scipy
Version: 0.9.0+dfsg1-1+b2
Severity: serious
Justification: fails to build from source (but built successfully in the past)
I have ran into this while building pymvpa2 packages. on mips and mipsel it
times out.
I have troubleshooted it on gabrielli and I believe the
:)
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protection)
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Package: mayavi2
Version: 4.0.0-1
Severity: grave
well -- as simple as the subject ;-) I tried to upgrade finally my laptop to
python 2.7 in wheezy and it required me to remove mayavi2 :-/
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Mayavi2. Can Mayavi2 be built against Python 2.7?
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]: *** [override_dh_auto_build] Error 1
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ftbfs):
https://github.com/nipy/nipype/commit/33db6f6bff3d0b554037e0169d17a14b7ff66f89
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-Ubuntu: https://bugs.launchpad.net/ubuntu/+source/nipype/+bug/835008
+Forwarded: not-needed
+Author: Barry Warsaw ba...@ubuntu.com
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it?
Apologies for not closing it in the changelog.
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just look into your own debian/changelog -- you already have one ;-)
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This is sbuild bug: #622832. TTBOMK it doesn't trigger on our
buildds (yet?).
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Will be addressed with soon to come new upstream release.
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