Your message dated Mon, 09 Jan 2023 20:49:17 +0000 with message-id <e1pez53-00ebls...@fasolo.debian.org> and subject line Bug#1027227: fixed in mdanalysis 2.4.2+dfsg1-1 has caused the Debian Bug report #1027227, regarding mdanalysis: autopkgtest fail with numpy/1.24.1 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 1027227: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1027227 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: mdanalysis Severity: important User: debian-pyt...@lists.debian.org Usertags: numpy1.24 Hello, recently numpy/1.24.1 has been uploaded to experimental, and this package autopkgtest fail when running against it. An overview of the upstream changes in the 1.24.x series is available at: https://numpy.org/doc/stable/release/1.24.0-notes.html Several of the errors are in the form of: AttributeError: module 'numpy' has no attribute 'X' with X in [float, int, bool, object, ...]. This is because, numpy upstream in 1.24.0, finally decided to expire https://numpy.org/doc/stable/release/1.24.0-notes.html#:~:text=The%20deprecation%20for%20the%20aliases some deprecations introduced in 1.20.0 https://numpy.org/doc/stable/release/1.20.0-notes.html#using-the-aliases-of-builtin-types-like-np-int-is-deprecated (released almost 2 years ago). All of those are quite straightforward to fix, since often it's just necessary to stop importing them from numpy and use the python native types. Other changes may requires a bit more rework to be addressed. Currently numpy/1.24.x is in experimental, but given the possible longer support that it'll receive from upstream, we're hopeful to include this in bookworm, so your help is necessary to address this bug ASAP. Regards, Sandro
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--- Begin Message ---Source: mdanalysis Source-Version: 2.4.2+dfsg1-1 Done: Drew Parsons <dpars...@debian.org> We believe that the bug you reported is fixed in the latest version of mdanalysis, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 1027...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Drew Parsons <dpars...@debian.org> (supplier of updated mdanalysis package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Mon, 09 Jan 2023 17:54:02 +0100 Source: mdanalysis Architecture: source Version: 2.4.2+dfsg1-1 Distribution: unstable Urgency: medium Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org> Changed-By: Drew Parsons <dpars...@debian.org> Closes: 1027227 Changes: mdanalysis (2.4.2+dfsg1-1) unstable; urgency=medium . * New upstream release. - fixes DensityAnalysis for numpy 1.24. Closes: #1027227, Checksums-Sha1: 69c14af4404d480816d3cc981f6c3ec9981ee6be 2901 mdanalysis_2.4.2+dfsg1-1.dsc 6d13bb890605d944507d8be8951e1b21293fb345 46702388 mdanalysis_2.4.2+dfsg1.orig.tar.xz b760ce377b44cf357da62daa5b2e5919f51f9a82 8768 mdanalysis_2.4.2+dfsg1-1.debian.tar.xz Checksums-Sha256: d813d966ae985ec7fee6f88f4c5d6146d7dff147b2975a1da520fbfe168964fc 2901 mdanalysis_2.4.2+dfsg1-1.dsc 500281060fd0d99b8e4a5ebac2b69e54e3d4b2d60dae618d936039394e865b21 46702388 mdanalysis_2.4.2+dfsg1.orig.tar.xz a716d3b05e0de061e93b901f4780505c8c484e347af1f631f41821b2570ad830 8768 mdanalysis_2.4.2+dfsg1-1.debian.tar.xz Files: 2a3f10b6458c10ded836eab8e4e511ec 2901 python optional mdanalysis_2.4.2+dfsg1-1.dsc ce05ec2f2c4ac19a6fd45992052b9d1e 46702388 python optional mdanalysis_2.4.2+dfsg1.orig.tar.xz 5eb135305e3576bc8c6ead0d6eee827a 8768 python optional mdanalysis_2.4.2+dfsg1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEI8mpPlhYGekSbQo2Vz7x5L1aAfoFAmO8c10ACgkQVz7x5L1a AfpH8xAAmJtsJmK486INvbCPRK5Vle5+PD4BT8n752K7kla2RqIqu530Dxz76VPL DYk6CPVwGv0fJ9LB3Iqb7+mtXcSz7vFfcgJQqly2AFXcxgkIvWizohxe90dQrgDw MV8WFVzaU+SzymZzR9dQy9R2oVh9PplZScYJ/zin2bgxjoECSf5TYk8CTIeWh7G9 2Q15nhBgyqOtfj3BPtuomQwcvcmnIn7nIgXMJkswUUBiOUFL5pQjP7L5hVKJYPcA VIp6SDJ21eDgBsNeLaVBNMdPE6k13XPqOR/Q865y4cAQ2bI4P9QBOMZrYTNLQ2DD YW71AjpqsUv0T8b4EBRfdUSf0ctTaQS77xFD+mEXT1Gb6p6221ght5vC9F1Cj3/T W5MwtMyb8Pl67u5imhQrvXjCy0qjaaRFyMHMPyDuJVAxvV9PnbnMNLR5ssXIJa/T OzIV48WVXIPar70s4G3yqd2t5NttuW/BISrR3Qe7e7az+cxeryhQkAkWhHSDD89N S3/BXHFDGFwBObgMnpGAdJrIp9c9zJywnqiYEO06sNaqkay8uhuvCEErKOqtsWsA tb7BeARkFZSV+pUi0EWUQODQKON+lUS7y9rmqqbht0kKsUUsHCF5p3C9jUo9Cpt7 948R+fuF+9xrm9rsebpL5OKcAzU7og3nV+v6qJQPWvWWQUE/MSs= =Vaii -----END PGP SIGNATURE-----
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