Your message dated Thu, 15 Feb 2024 20:37:29 +0000
with message-id <e1raiu5-00bq6n...@fasolo.debian.org>
and subject line Bug#1057574: fixed in lmfit-py 1.2.2-3
has caused the Debian Bug report #1057574,
regarding lmfit-py: FTBFS: mportError: The `scipy` install you are using seems 
to be broken, (extension modules cannot be imported), please try reinstalling.
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
1057574: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1057574
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:lmfit-py
Version: 1.2.2-2
Severity: serious
Tags: ftbfs

Dear maintainer:

During a rebuild of all packages in unstable, your package failed to build:

--------------------------------------------------------------------------------
[...]
 debian/rules binary
dh binary --buildsystem=pybuild
   dh_update_autotools_config -O--buildsystem=pybuild
   dh_autoreconf -O--buildsystem=pybuild
   dh_auto_configure -O--buildsystem=pybuild
        pybuild --configure -i python{version} -p "3.12 3.11"
   dh_auto_build -O--buildsystem=pybuild
        pybuild --build -i python{version} -p "3.12 3.11"
I: pybuild plugin_pyproject:110: Building wheel for python3.12 with "build" 
module
I: pybuild base:310: python3.12 -m build --skip-dependency-check --no-isolation --wheel 
--outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_lmfit
* Building wheel...
running bdist_wheel
running build
running build_py
creating build
creating build/lib
creating build/lib/lmfit
copying lmfit/__init__.py -> build/lib/lmfit
copying lmfit/confidence.py -> build/lib/lmfit
copying lmfit/version.py -> build/lib/lmfit
copying lmfit/models.py -> build/lib/lmfit
copying lmfit/printfuncs.py -> build/lib/lmfit
copying lmfit/_ampgo.py -> build/lib/lmfit
copying lmfit/parameter.py -> build/lib/lmfit
copying lmfit/minimizer.py -> build/lib/lmfit
copying lmfit/jsonutils.py -> build/lib/lmfit
copying lmfit/conf_emcee.py -> build/lib/lmfit
copying lmfit/model.py -> build/lib/lmfit
copying lmfit/lineshapes.py -> build/lib/lmfit
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/lmfit
copying build/lib/lmfit/__init__.py -> build/bdist.linux-x86_64/wheel/lmfit
copying build/lib/lmfit/confidence.py -> build/bdist.linux-x86_64/wheel/lmfit
copying build/lib/lmfit/version.py -> build/bdist.linux-x86_64/wheel/lmfit
copying build/lib/lmfit/models.py -> build/bdist.linux-x86_64/wheel/lmfit
copying build/lib/lmfit/printfuncs.py -> build/bdist.linux-x86_64/wheel/lmfit
copying build/lib/lmfit/_ampgo.py -> build/bdist.linux-x86_64/wheel/lmfit
copying build/lib/lmfit/parameter.py -> build/bdist.linux-x86_64/wheel/lmfit
copying build/lib/lmfit/minimizer.py -> build/bdist.linux-x86_64/wheel/lmfit
copying build/lib/lmfit/jsonutils.py -> build/bdist.linux-x86_64/wheel/lmfit
copying build/lib/lmfit/conf_emcee.py -> build/bdist.linux-x86_64/wheel/lmfit
copying build/lib/lmfit/model.py -> build/bdist.linux-x86_64/wheel/lmfit
copying build/lib/lmfit/lineshapes.py -> build/bdist.linux-x86_64/wheel/lmfit
running install_egg_info
running egg_info
writing lmfit.egg-info/PKG-INFO
writing dependency_links to lmfit.egg-info/dependency_links.txt
writing requirements to lmfit.egg-info/requires.txt
writing top-level names to lmfit.egg-info/top_level.txt
reading manifest file 'lmfit.egg-info/SOURCES.txt'
adding license file 'LICENSE'
adding license file 'AUTHORS.txt'
writing manifest file 'lmfit.egg-info/SOURCES.txt'
Copying lmfit.egg-info to build/bdist.linux-x86_64/wheel/lmfit-1.2.2.egg-info
running install_scripts
creating build/bdist.linux-x86_64/wheel/lmfit-1.2.2.dist-info/WHEEL
creating 
'/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_lmfit/.tmp-8rugln1l/lmfit-1.2.2-py3-none-any.whl'
 and adding 'build/bdist.linux-x86_64/wheel' to it
adding 'lmfit/__init__.py'
adding 'lmfit/_ampgo.py'
adding 'lmfit/conf_emcee.py'
adding 'lmfit/confidence.py'
adding 'lmfit/jsonutils.py'
adding 'lmfit/lineshapes.py'
adding 'lmfit/minimizer.py'
adding 'lmfit/model.py'
adding 'lmfit/models.py'
adding 'lmfit/parameter.py'
adding 'lmfit/printfuncs.py'
adding 'lmfit/version.py'
adding 'lmfit-1.2.2.dist-info/AUTHORS.txt'
adding 'lmfit-1.2.2.dist-info/LICENSE'
adding 'lmfit-1.2.2.dist-info/METADATA'
adding 'lmfit-1.2.2.dist-info/WHEEL'
adding 'lmfit-1.2.2.dist-info/top_level.txt'
adding 'lmfit-1.2.2.dist-info/RECORD'
removing build/bdist.linux-x86_64/wheel
Successfully built lmfit-1.2.2-py3-none-any.whl
I: pybuild plugin_pyproject:122: Unpacking wheel built for python3.12 with 
"installer" module
I: pybuild plugin_pyproject:110: Building wheel for python3.11 with "build" 
module
I: pybuild base:310: python3.11 -m build --skip-dependency-check --no-isolation --wheel 
--outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_lmfit
* Building wheel...
running bdist_wheel
running build
running build_py
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/lmfit
copying build/lib/lmfit/__init__.py -> build/bdist.linux-x86_64/wheel/lmfit
copying build/lib/lmfit/confidence.py -> build/bdist.linux-x86_64/wheel/lmfit
copying build/lib/lmfit/version.py -> build/bdist.linux-x86_64/wheel/lmfit
copying build/lib/lmfit/models.py -> build/bdist.linux-x86_64/wheel/lmfit
copying build/lib/lmfit/printfuncs.py -> build/bdist.linux-x86_64/wheel/lmfit
copying build/lib/lmfit/_ampgo.py -> build/bdist.linux-x86_64/wheel/lmfit
copying build/lib/lmfit/parameter.py -> build/bdist.linux-x86_64/wheel/lmfit
copying build/lib/lmfit/minimizer.py -> build/bdist.linux-x86_64/wheel/lmfit
copying build/lib/lmfit/jsonutils.py -> build/bdist.linux-x86_64/wheel/lmfit
copying build/lib/lmfit/conf_emcee.py -> build/bdist.linux-x86_64/wheel/lmfit
copying build/lib/lmfit/model.py -> build/bdist.linux-x86_64/wheel/lmfit
copying build/lib/lmfit/lineshapes.py -> build/bdist.linux-x86_64/wheel/lmfit
running install_egg_info
running egg_info
writing lmfit.egg-info/PKG-INFO
writing dependency_links to lmfit.egg-info/dependency_links.txt
writing requirements to lmfit.egg-info/requires.txt
writing top-level names to lmfit.egg-info/top_level.txt
reading manifest file 'lmfit.egg-info/SOURCES.txt'
adding license file 'LICENSE'
adding license file 'AUTHORS.txt'
writing manifest file 'lmfit.egg-info/SOURCES.txt'
Copying lmfit.egg-info to build/bdist.linux-x86_64/wheel/lmfit-1.2.2.egg-info
running install_scripts
creating build/bdist.linux-x86_64/wheel/lmfit-1.2.2.dist-info/WHEEL
creating 
'/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_lmfit/.tmp-s3otg8hv/lmfit-1.2.2-py3-none-any.whl'
 and adding 'build/bdist.linux-x86_64/wheel' to it
adding 'lmfit/__init__.py'
adding 'lmfit/_ampgo.py'
adding 'lmfit/conf_emcee.py'
adding 'lmfit/confidence.py'
adding 'lmfit/jsonutils.py'
adding 'lmfit/lineshapes.py'
adding 'lmfit/minimizer.py'
adding 'lmfit/model.py'
adding 'lmfit/models.py'
adding 'lmfit/parameter.py'
adding 'lmfit/printfuncs.py'
adding 'lmfit/version.py'
adding 'lmfit-1.2.2.dist-info/AUTHORS.txt'
adding 'lmfit-1.2.2.dist-info/LICENSE'
adding 'lmfit-1.2.2.dist-info/METADATA'
adding 'lmfit-1.2.2.dist-info/WHEEL'
adding 'lmfit-1.2.2.dist-info/top_level.txt'
adding 'lmfit-1.2.2.dist-info/RECORD'
removing build/bdist.linux-x86_64/wheel
Successfully built lmfit-1.2.2-py3-none-any.whl
I: pybuild plugin_pyproject:122: Unpacking wheel built for python3.11 with 
"installer" module
   dh_auto_test -O--buildsystem=pybuild
        pybuild --test --test-pytest -i python{version} -p "3.12 3.11"
I: pybuild pybuild:314: cp -r NIST_STRD examples 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_lmfit/build
I: pybuild base:310: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_lmfit/build; 
python3.12 -m pytest tests
ImportError while loading conftest 
'/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_lmfit/build/tests/conftest.py'.
tests/conftest.py:6: in <module>
    import lmfit
lmfit/__init__.py:38: in <module>
    from .confidence import conf_interval, conf_interval2d
lmfit/confidence.py:6: in <module>
    from scipy.optimize import root_scalar
/usr/lib/python3/dist-packages/scipy/__init__.py:159: in <module>
    raise ImportError(msg) from e
E   ImportError: The `scipy` install you are using seems to be broken, 
(extension modules cannot be imported), please try reinstalling.
E: pybuild pybuild:395: test: plugin pyproject failed with: exit code=4: cd 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_lmfit/build; python3.12 -m pytest tests
I: pybuild pybuild:314: cp -r NIST_STRD examples 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_lmfit/build
I: pybuild base:310: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_lmfit/build; 
python3.11 -m pytest tests
============================= test session starts ==============================
platform linux -- Python 3.11.7, pytest-7.4.3, pluggy-1.3.0
rootdir: /<<PKGBUILDDIR>>
configfile: setup.cfg
plugins: cov-4.1.0
collected 654 items

tests/test_1variable.py .                                                [  0%]
tests/test_NIST_Strd.py ...........................                      [  4%]
tests/test_algebraic_constraint.py ....                                  [  4%]
tests/test_ampgo.py ............                                         [  6%]
tests/test_basicfit.py .                                                 [  6%]
tests/test_basinhopping.py .....                                         [  7%]
tests/test_bounded_jacobian.py ..                                        [  7%]
tests/test_bounds.py .                                                   [  8%]
tests/test_brute.py ............                                         [  9%]
tests/test_builtin_models.py .......                                     [ 11%]
tests/test_confidence.py .............                                   [ 12%]
tests/test_covariance_matrix.py ..ssssssss.                              [ 14%]
tests/test_custom_independentvar.py .                                    [ 14%]
tests/test_default_kws.py .                                              [ 14%]
tests/test_dual_annealing.py ...                                         [ 15%]
tests/test_itercb.py ....................                                [ 18%]
tests/test_jsonutils.py .................                                [ 21%]
tests/test_least_squares.py .....                                        [ 21%]
tests/test_lineshapes.py ............................................... [ 29%]
..........................................                               [ 35%]
tests/test_manypeaks_speed.py .                                          [ 35%]
tests/test_max_nfev.py ...........................                       [ 39%]
tests/test_minimizer.py ...............                                  [ 42%]
tests/test_model.py .................................................... [ 50%]
........................................................................ [ 61%]
.....s....s.............................................                 [ 69%]
tests/test_model_saveload.py ......................                      [ 72%]
tests/test_model_uncertainties.py .....                                  [ 73%]
tests/test_models.py ........                                            [ 74%]
tests/test_multidatasets.py .                                            [ 75%]
tests/test_nose.py ...................s......                            [ 79%]
tests/test_pandas.py ..                                                  [ 79%]
tests/test_parameter.py ................................................ [ 86%]
..........                                                               [ 88%]
tests/test_parameters.py ...............................                 [ 92%]
tests/test_params_uvars.py ...                                           [ 93%]
tests/test_printfuncs.py ............................s......             [ 98%]
tests/test_shgo.py ......                                                [ 99%]
tests/test_stepmodel.py ..                                               [100%]

=============================== warnings summary ===============================
../../../../../../usr/lib/python3/dist-packages/past/builtins/misc.py:45
  /usr/lib/python3/dist-packages/past/builtins/misc.py:45: DeprecationWarning: 
the imp module is deprecated in favour of importlib and slated for removal in 
Python 3.12; see the module's documentation for alternative uses
    from imp import reload

tests/test_manypeaks_speed.py:15
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_lmfit/build/tests/test_manypeaks_speed.py:15:
 PytestUnknownMarkWarning: Unknown pytest.mark.flaky - is this a typo?  You can register 
custom marks to avoid this warning - for details, see 
https://docs.pytest.org/en/stable/how-to/mark.html
    @pytest.mark.flaky(max_runs=5)

.pybuild/cpython3_3.11_lmfit/build/tests/test_model.py::test_make_params_valuetypes
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_lmfit/build/lmfit/model.py:686: 
ComplexWarning: Casting complex values to real discards the imaginary part
    dval = {'value': float(val)}

.pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee
  /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is deprecated to return 
a value that is not None from a test case (<bound method CommonMinimizerTest.test_emcee 
of <tests.test_nose.CommonMinimizerTest testMethod=test_emcee>>)
    return self.run(*args, **kwds)

.pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_bounds_length
  /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is deprecated to return 
a value that is not None from a test case (<bound method 
CommonMinimizerTest.test_emcee_bounds_length of <tests.test_nose.CommonMinimizerTest 
testMethod=test_emcee_bounds_length>>)
    return self.run(*args, **kwds)

.pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_custom_pool
  /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is deprecated to return 
a value that is not None from a test case (<bound method 
CommonMinimizerTest.test_emcee_custom_pool of <tests.test_nose.CommonMinimizerTest 
testMethod=test_emcee_custom_pool>>)
    return self.run(*args, **kwds)

.pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_float
  /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is deprecated to return 
a value that is not None from a test case (<bound method 
CommonMinimizerTest.test_emcee_float of <tests.test_nose.CommonMinimizerTest 
testMethod=test_emcee_float>>)
    return self.run(*args, **kwds)

.pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_init_with_chain
  /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is deprecated to return 
a value that is not None from a test case (<bound method 
CommonMinimizerTest.test_emcee_init_with_chain of <tests.test_nose.CommonMinimizerTest 
testMethod=test_emcee_init_with_chain>>)
    return self.run(*args, **kwds)

.pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_method_kwarg
  /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is deprecated to return 
a value that is not None from a test case (<bound method 
CommonMinimizerTest.test_emcee_method_kwarg of <tests.test_nose.CommonMinimizerTest 
testMethod=test_emcee_method_kwarg>>)
    return self.run(*args, **kwds)

.pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_ntemps
  /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is deprecated to return 
a value that is not None from a test case (<bound method 
CommonMinimizerTest.test_emcee_ntemps of <tests.test_nose.CommonMinimizerTest 
testMethod=test_emcee_ntemps>>)
    return self.run(*args, **kwds)

.pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_output
  /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is deprecated to return 
a value that is not None from a test case (<bound method 
CommonMinimizerTest.test_emcee_output of <tests.test_nose.CommonMinimizerTest 
testMethod=test_emcee_output>>)
    return self.run(*args, **kwds)

.pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_partial_bounds
  /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is deprecated to return 
a value that is not None from a test case (<bound method 
CommonMinimizerTest.test_emcee_partial_bounds of <tests.test_nose.CommonMinimizerTest 
testMethod=test_emcee_partial_bounds>>)
    return self.run(*args, **kwds)

.pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_reuse_sampler
  /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is deprecated to return 
a value that is not None from a test case (<bound method 
CommonMinimizerTest.test_emcee_reuse_sampler of <tests.test_nose.CommonMinimizerTest 
testMethod=test_emcee_reuse_sampler>>)
    return self.run(*args, **kwds)

.pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_seed
  /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is deprecated to return 
a value that is not None from a test case (<bound method 
CommonMinimizerTest.test_emcee_seed of <tests.test_nose.CommonMinimizerTest 
testMethod=test_emcee_seed>>)
    return self.run(*args, **kwds)

.pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_scalar_minimizers
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_lmfit/build/lmfit/minimizer.py:979: 
DeprecationWarning: 'maxiter' has been deprecated in favor of 'maxfun' and will be removed 
in SciPy 1.11.0.
    ret = scipy_minimize(self.penalty, variables, **fmin_kws)

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html

---------- coverage: platform linux, python 3.11.7-final-0 -----------
Coverage HTML written to dir htmlcov

=========== 642 passed, 12 skipped, 15 warnings in 74.88s (0:01:14) ============
I: pybuild pybuild:340: rm -fr /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_lmfit/build/NIST_STRD 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_lmfit/build/examples; find 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_lmfit/build -name "*.sav" -delete
        rm -fr -- /tmp/dh-xdg-rundir-Oz_xUhDB
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.12 
3.11" returned exit code 13
make: *** [debian/rules:13: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------

The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:

https://people.debian.org/~sanvila/build-logs/202312/

About the archive rebuild: The build was made using virtual machines
from AWS, with enough memory, enough disk, and either one or two
CPUs, using a reduced chroot with only build-essential packages.

If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and affects, so that this is still visible in the BTS web
page for this package.

Thanks.

--- End Message ---
--- Begin Message ---
Source: lmfit-py
Source-Version: 1.2.2-3
Done: Andreas Tille <ti...@debian.org>

We believe that the bug you reported is fixed in the latest version of
lmfit-py, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1057...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated lmfit-py package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Thu, 15 Feb 2024 21:12:51 +0100
Source: lmfit-py
Architecture: source
Version: 1.2.2-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Closes: 1047368 1056419 1057574 1058311
Changes:
 lmfit-py (1.2.2-3) unstable; urgency=medium
 .
   * Team upload.
   * Versioned (Build-)Depends: python3-uncertainties (>= 3.1.7-1.1~)
     Closes: #1056419, #1058311, #1057574
   * Skip a test on 32-bit archs
   * Fix clean target
     Closes: #1047368
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Files:
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 a5ccd0fcf7b8bbd37a3daac965de0f62 9004 science optional 
lmfit-py_1.2.2-3.debian.tar.xz
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