Your message dated Mon, 22 Jan 2024 16:07:18 +0000
with message-id <e1rrwps-006clb...@fasolo.debian.org>
and subject line Bug#1061313: fixed in macaulay2 1.22+ds-6
has caused the Debian Bug report #1061313,
regarding macaulay2 ftbfs with Python 3.12 as the default
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
1061313: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1061313
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:macaulay2
Version: 1.22+ds-5
Severity: serious
Tags: sid trixie ftbfs
User: debian-pyt...@lists.debian.org
Usertags: python3.12
with python3-defaults from experimental:
[...]
gcc -std=gnu11 -g -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security
-fcf-protection
-fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/macaulay2-1.22+ds-5build1
-g3 -O2 -Wno-unused -pipe -Wall -Wno-shadow -Wcast-qual
-Wno-sign-conversion -Wno-sign-compare -Wno-parentheses
-Wno-sign-compare -Wuninitialized -Wframe-address -Wstrict-aliasing
-Wfatal-errors -Wimplicit-function-declaration -Wno-unused-label
-Wreturn-type -Wunused-function -Wfatal-errors -I. -I. -I./../e
-I./../system -I./../../include -I./../c -I/<<PKGBUILDDIR>>/M2/include
-I/<<PKGBUILDDIR>>/M2/include -I/<<PKGBUILDDIR>>/M2/usr-host/include
-I/<<PKGBUILDDIR>>/M2/include -I/<<PKGBUILDDIR>>/M2/include
-I/<<PKGBUILDDIR>>/M2/usr-host/include -I/<<PKGBUILDDIR>>/M2/include
-I/<<PKGBUILDDIR>>/M2/include -I/<<PKGBUILDDIR>>/M2/usr-host/include
-Wdate-time -D_FORTIFY_SOURCE=3 -isystem /usr/include/libxml2
-I/usr/include/x86_64-linux-gnu/singular -I/usr/include/singular
-DSING_NDEBUG -DOM_NDEBUG -I/usr/src/gtest -Wdate-time
-D_FORTIFY_SOURCE=3 -DNDEBUG -I/usr/include/cddlib -I/usr/include/cdd
-I/usr/include/eigen3 -I/usr/include/python3.12 -I/usr/include
-DBOOST_STACKTRACE_LINK -isystem /usr/include/libxml2
-I/usr/include/x86_64-linux-gnu/singular -I/usr/include/singular
-DSING_NDEBUG -DOM_NDEBUG -I/usr/src/gtest -Wdate-time
-D_FORTIFY_SOURCE=3 -DNDEBUG -I/usr/include/cddlib -I/usr/include/cdd
-I/usr/include/eigen3 -I/usr/include/python3.12 -I/usr/include
-DBOOST_STACKTRACE_LINK -isystem /usr/include/libxml2
-I/usr/include/x86_64-linux-gnu/singular -I/usr/include/singular
-DSING_NDEBUG -DOM_NDEBUG -I/usr/src/gtest -Wdate-time
-D_FORTIFY_SOURCE=3 -DNDEBUG -I/usr/include/cddlib -I/usr/include/cdd
-I/usr/include/eigen3 -I/usr/include/python3.12 -I/usr/include
-DBOOST_STACKTRACE_LINK -DNDEBUG -Wno-unknown-pragmas -c
-Wno-unused-value -Wno-unused-but-set-variable -Wno-maybe-uninitialized
util-tmp.c -o util.o
util.d: In function ‘util_getSequenceOfPairsOfSmallIntegers_1’:
util.d:52:12: warning: array subscript ‘struct M2_arrayint_struct[0]’ is
partly outside array bounds of ‘unsigned char[4]’ [-Warray-bounds=]
52 | is x:Sequence do getSequenceOfPairsOfSmallIntegers(x)
| ^~
In file included from ./../../include/M2/gc-include.h:44,
from util-exports.h:6,
from util-tmp.c:1:
util.d:52:29: note: object of size 4 allocated by ‘GC_malloc_atomic’
52 | is x:Sequence do getSequenceOfPairsOfSmallIntegers(x)
| ^~~~~~~~~~~~~~~~
util.d: In function ‘util_getSequenceOfSmallIntegers_1’:
util.d:102:19: warning: array subscript ‘struct M2_arrayint_struct[0]’
is partly outside array bounds of ‘unsigned char[4]’ [-Warray-bounds=]
102 | anywhereAbort("internal error:
getSequenceOfSmallIntegers.");
| ^~
util.d:102:36: note: object of size 4 allocated by ‘GC_malloc_atomic’
102 | anywhereAbort("internal error:
getSequenceOfSmallIntegers.");
| ^~~~~~~~~~~~~~~~
util.d: In function ‘util_getNullOrSequenceOfSmallIntegers’:
util.d:110:19: warning: array subscript ‘struct M2_arrayint_struct[0]’
is partly outside array bounds of ‘unsigned char[4]’ [-Warray-bounds=]
110 | anywhereAbort("internal error:
getSequenceOfSmallIntegers.");
| ^~
util.d:110:36: note: object of size 4 allocated by ‘GC_malloc_atomic’
110 | anywhereAbort("internal error:
getSequenceOfSmallIntegers.");
| ^~~~~~~~~~~~~~~~
util.d: In function ‘util_getSequenceOfStrings’:
util.d:120:12: warning: array subscript ‘struct
M2_ArrayString_struct[0]’ is partly outside array bounds of ‘unsigned
char[8]’ [-Warray-bounds=]
120 | new array(string) len length(s) do (
| ^~
util.d:120:32: note: object of size 8 allocated by ‘GC_malloc’
120 | new array(string) len length(s) do (
| ^~~~~~~~~
util.d: In function ‘util_getSequenceOfRingElements’:
util.d:151:12: warning: array subscript ‘struct
engine_RawRingElementArray_struct[0]’ is partly outside array bounds of
‘unsigned char[8]’ [-Warray-bounds=]
151 | is a:RawRingElementCell do RawRingElementArray(a.p)
| ^~
util.d:151:44: note: object of size 8 allocated by ‘GC_malloc’
151 | is a:RawRingElementCell do RawRingElementArray(a.p)
| ^~~~~~~~~
util.d: In function ‘util_getSequenceOfMatrices’:
util.d:170:13: warning: array subscript ‘struct
engine_RawMatrixArray_struct[0]’ is partly outside array bounds of
‘unsigned char[8]’ [-Warray-bounds=]
170 | is a:RawMatrixCell do RawMatrixArray(a.p)
| ^~
util.d:170:40: note: object of size 8 allocated by ‘GC_malloc’
170 | is a:RawMatrixCell do RawMatrixArray(a.p)
| ^~~~~~~
util.d: In function ‘util_getSequenceOfMutableMatrices’:
util.d:187:13: warning: array subscript ‘struct
engine_RawMutableMatrixArray_struct[0]’ is partly outside array bounds
of ‘unsigned char[8]’ [-Warray-bounds=]
187 | is a:RawMutableMatrixCell do RawMutableMatrixArray(a.p)
| ^~
util.d:187:47: note: object of size 8 allocated by ‘GC_malloc’
187 | is a:RawMutableMatrixCell do RawMutableMatrixArray(a.p)
| ^~~~~~~~~
/<<PKGBUILDDIR>>/M2/Macaulay2/c/scc1 -O struct.d
test -e struct-exports.h && cmp -s struct-exports.h.tmp struct-exports.h
|| cp struct-exports.h.tmp struct-exports.h
test -e struct-exports.h && cmp -s struct-exports.h.tmp struct-exports.h
|| cp struct-exports.h.tmp struct-exports.h
gcc -std=gnu11 -g -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security
-fcf-protection
-fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/macaulay2-1.22+ds-5build1
-g3 -O2 -Wno-unused -pipe -Wall -Wno-shadow -Wcast-qual
-Wno-sign-conversion -Wno-sign-compare -Wno-parentheses
-Wno-sign-compare -Wuninitialized -Wframe-address -Wstrict-aliasing
-Wfatal-errors -Wimplicit-function-declaration -Wno-unused-label
-Wreturn-type -Wunused-function -Wfatal-errors -I. -I. -I./../e
-I./../system -I./../../include -I./../c -I/<<PKGBUILDDIR>>/M2/include
-I/<<PKGBUILDDIR>>/M2/include -I/<<PKGBUILDDIR>>/M2/usr-host/include
-I/<<PKGBUILDDIR>>/M2/include -I/<<PKGBUILDDIR>>/M2/include
-I/<<PKGBUILDDIR>>/M2/usr-host/include -I/<<PKGBUILDDIR>>/M2/include
-I/<<PKGBUILDDIR>>/M2/include -I/<<PKGBUILDDIR>>/M2/usr-host/include
-Wdate-time -D_FORTIFY_SOURCE=3 -isystem /usr/include/libxml2
-I/usr/include/x86_64-linux-gnu/singular -I/usr/include/singular
-DSING_NDEBUG -DOM_NDEBUG -I/usr/src/gtest -Wdate-time
-D_FORTIFY_SOURCE=3 -DNDEBUG -I/usr/include/cddlib -I/usr/include/cdd
-I/usr/include/eigen3 -I/usr/include/python3.12 -I/usr/include
-DBOOST_STACKTRACE_LINK -isystem /usr/include/libxml2
-I/usr/include/x86_64-linux-gnu/singular -I/usr/include/singular
-DSING_NDEBUG -DOM_NDEBUG -I/usr/src/gtest -Wdate-time
-D_FORTIFY_SOURCE=3 -DNDEBUG -I/usr/include/cddlib -I/usr/include/cdd
-I/usr/include/eigen3 -I/usr/include/python3.12 -I/usr/include
-DBOOST_STACKTRACE_LINK -isystem /usr/include/libxml2
-I/usr/include/x86_64-linux-gnu/singular -I/usr/include/singular
-DSING_NDEBUG -DOM_NDEBUG -I/usr/src/gtest -Wdate-time
-D_FORTIFY_SOURCE=3 -DNDEBUG -I/usr/include/cddlib -I/usr/include/cdd
-I/usr/include/eigen3 -I/usr/include/python3.12 -I/usr/include
-DBOOST_STACKTRACE_LINK -DNDEBUG -Wno-unknown-pragmas -c
-Wno-unused-value -Wno-unused-but-set-variable -Wno-maybe-uninitialized
struct-tmp.c -o struct.o
struct.d: In function ‘struct_toIntArray_1’:
struct.d:102:19: warning: array subscript ‘struct M2_arrayint_struct[0]’
is partly outside array bounds of ‘unsigned char[4]’ [-Warray-bounds=]
102 | fatal("internal error: toIntArray expected an array
of ints");
| ^~
In file included from ./../../include/M2/gc-include.h:44,
from struct-exports.h:6,
from struct-tmp.c:1:
struct.d:102:36: note: object of size 4 allocated by ‘GC_malloc_atomic’
102 | fatal("internal error: toIntArray expected an array
of ints");
| ^~~~~~~~~~~~~~~~
--- End Message ---
--- Begin Message ---
Source: macaulay2
Source-Version: 1.22+ds-6
Done: Doug Torrance <dtorra...@debian.org>
We believe that the bug you reported is fixed in the latest version of
macaulay2, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1061...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Doug Torrance <dtorra...@debian.org> (supplier of updated macaulay2 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 22 Jan 2024 10:17:56 -0500
Source: macaulay2
Built-For-Profiles: noudeb
Architecture: source
Version: 1.22+ds-6
Distribution: unstable
Urgency: medium
Maintainer: Debian Math Team <team+m...@tracker.debian.org>
Changed-By: Doug Torrance <dtorra...@debian.org>
Closes: 1061313
Changes:
macaulay2 (1.22+ds-6) unstable; urgency=medium
.
* debian/copyright
- Update copyright years for gmpy2 code.
* debian/patches/python3.12
- New patch; add support for Python 3.12 (Closes: #1061313).
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--- End Message ---
