Your message dated Wed, 13 Mar 2024 17:55:06 +0000
with message-id <e1rksok-007xrq...@fasolo.debian.org>
and subject line Bug#1066336: fixed in silo-llnl 4.11-4
has caused the Debian Bug report #1066336,
regarding silo-llnl: FTBFS: silo_hdf5.c:2173:5: error: implicit declaration of
function ‘zfp_init_zfp’ [-Werror=implicit-function-declaration]
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
1066336: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1066336
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: silo-llnl
Version: 4.11-3.1
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lu...@debian.org
Usertags: ftbfs-20240313 ftbfs-trixie ftbfs-impfuncdef
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
This is most likely caused by a change in dpkg 1.22.6, that enabled
-Werror=implicit-function-declaration. For more information, see
https://wiki.debian.org/qa.debian.org/FTBFS#A2024-03-13_-Werror.3Dimplicit-function-declaration
Relevant part (hopefully):
> /bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I.
> -I../.. -I./../silo -I./../silo -I./../fpzip -DH5_HAVE_FILTER_ZFP
> -DH5Z_ZFP_AS_LIB -DAS_SILO_BUILTIN -I./../zfp-0.5.5/include
> -I/usr/include/hdf5/openmpi -I/usr/include/x86_64-linux-gnu/qt5
> -I/usr/include/x86_64-linux-gnu/qt5/QtGui
> -I/usr/include/x86_64-linux-gnu/qt5/QtCore
> -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/lib/openmpi/include
> -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration
> -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
> -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
> -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64
> -Wdeclaration-after-statement -c -o silo_hdf5.lo silo_hdf5.c
> libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I../.. -I./../silo -I./../silo
> -I./../fpzip -DH5_HAVE_FILTER_ZFP -DH5Z_ZFP_AS_LIB -DAS_SILO_BUILTIN
> -I./../zfp-0.5.5/include -I/usr/include/hdf5/openmpi
> -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtGui
> -I/usr/include/x86_64-linux-gnu/qt5/QtCore
> -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/lib/openmpi/include
> -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration
> -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
> -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
> -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64
> -Wdeclaration-after-statement -c silo_hdf5.c -fPIC -DPIC -o .libs/silo_hdf5.o
> silo_hdf5.c:61:2: warning: #warning DO WE NEED THIS HEADER FILE [-Wcpp]
> 61 | #warning DO WE NEED THIS HEADER FILE
> | ^~~~~~~
> In file included from silo_hdf5.c:74:
> silo_hdf5_private.h:110:2: warning: #warning REMOVE db_hdf5_CpListedObjects
> [-Wcpp]
> 110 | #warning REMOVE db_hdf5_CpListedObjects
> | ^~~~~~~
> In file included from silo_hdf5_private.h:67:
> silo_hdf5.c: In function ‘db_hdf5_get_obj_dsnames’:
> silo_hdf5.c:1812:45: warning: passing argument 1 of ‘_db_safe_strdup’ makes
> pointer from integer without a cast [-Wint-conversion]
> 1812 | (*dsnames)[i] = strdup(m.MEMNAME[i]); \
> | ~~~~~~~~~^~~
> | |
> | char
> ./../silo/silo_private.h:939:35: note: in definition of macro ‘strdup’
> 939 | #define strdup(s) _db_safe_strdup(s)
> | ^
> silo_hdf5.c:1869:13: note: in expansion of macro ‘DB_OBJ_CASE’
> 1869 | DB_OBJ_CASE(DB_CURVE, DBcurve_mt, npts?1:1, yvarname)
> | ^~~~~~~~~~~
> In file included from ./../silo/silo_private.h:79:
> ./../silo/silo.h:2214:56: note: expected ‘const char *’ but argument is of
> type ‘char’
> 2214 | SILO_API extern char * _db_safe_strdup(const char *);
> | ^~~~~~~~~~~~
> silo_hdf5.c: In function ‘db_hdf5_init’:
> silo_hdf5.c:2173:5: error: implicit declaration of function ‘zfp_init_zfp’
> [-Werror=implicit-function-declaration]
> 2173 | zfp_init_zfp();
> | ^~~~~~~~~~~~
> silo_hdf5.c: In function ‘db_hdf5_InitCallbacks’:
> silo_hdf5.c:2799:2: warning: #warning GET RID OF CPLISTEDOBJECTS [-Wcpp]
> 2799 | #warning GET RID OF CPLISTEDOBJECTS
> | ^~~~~~~
> silo_hdf5.c: In function ‘db_hdf5_set_compression’:
> silo_hdf5.c:3347:2: warning: #warning WHAT ABOUT NULL RETURN FROM
> DBGETCOMPRESSION [-Wcpp]
> 3347 | #warning WHAT ABOUT NULL RETURN FROM DBGETCOMPRESSION
> | ^~~~~~~
> silo_hdf5.c:3378:2: warning: #warning FIX MISSING .compressionMinsize member
> [-Wcpp]
> 3378 | #warning FIX MISSING .compressionMinsize member
> | ^~~~~~~
> silo_hdf5.c:3396:2: warning: #warning QUERY FILE LEVEL COMPRESSION PARAMS
> HERE [-Wcpp]
> 3396 | #warning QUERY FILE LEVEL COMPRESSION PARAMS HERE
> | ^~~~~~~
> silo_hdf5.c: In function ‘load_toc’:
> silo_hdf5.c:4121:2: warning: #warning REVISIT THIS CODE BLOCK [-Wcpp]
> 4121 | #warning REVISIT THIS CODE BLOCK
> | ^~~~~~~
> silo_hdf5.c: In function ‘db_hdf5_resolvename’:
> silo_hdf5.c:4736:2: warning: #warning HARD CODED SIZE HERE [-Wcpp]
> 4736 | #warning HARD CODED SIZE HERE
> | ^~~~~~~
> silo_hdf5.c: In function ‘db_hdf5_process_file_options’:
> silo_hdf5.c:4960:2: warning: #warning FIX ME...THIS NEEDS TO BE CONDITION ON
> COMPAT MODE WORKS FOR 1.8.0 [-Wcpp]
> 4960 | #warning FIX ME...THIS NEEDS TO BE CONDITION ON COMPAT MODE WORKS FOR
> 1.8.0
> | ^~~~~~~
> silo_hdf5.c:4967:2: warning: #warning SET FRIENDLY NAMES TO 2 but only at
> file level [-Wcpp]
> 4967 | #warning SET FRIENDLY NAMES TO 2 but only at file level
> | ^~~~~~~
> silo_hdf5.c:5004:2: warning: #warning REMOVED WINDOWS SPECIFIC CHECK [-Wcpp]
> 5004 | #warning REMOVED WINDOWS SPECIFIC CHECK
> | ^~~~~~~
> silo_hdf5.c:5094:2: warning: #warning DO WE STILL NEED THIS [-Wcpp]
> 5094 | #warning DO WE STILL NEED THIS
> | ^~~~~~~
> silo_hdf5.c:5158:2: warning: #warning REMOVED WINDOWS SPECIFIC CHECK [-Wcpp]
> 5158 | #warning REMOVED WINDOWS SPECIFIC CHECK
> | ^~~~~~~
> silo_hdf5.c:5433:2: warning: #warning DO WE STILL NEED THIS [-Wcpp]
> 5433 | #warning DO WE STILL NEED THIS
> | ^~~~~~~
> silo_hdf5.c:5517:2: warning: #warning FIX THIS [-Wcpp]
> 5517 | #warning FIX THIS
> | ^~~~~~~
> silo_hdf5.c: In function ‘db_hdf5_Create’:
> silo_hdf5.c:5971:2: warning: #warning BACKWARD COMPAT ISSUE FOR HDF5 [-Wcpp]
> 5971 | #warning BACKWARD COMPAT ISSUE FOR HDF5
> | ^~~~~~~
> silo_hdf5.c:6006:2: warning: #warning FIX FILE SCOPE GLOBAL INITIALIZATION
> [-Wcpp]
> 6006 | #warning FIX FILE SCOPE GLOBAL INITIALIZATION
> | ^~~~~~~
> silo_hdf5.c: In function ‘copy_obj’:
> silo_hdf5.c:6470:2: warning: #warning WHY THIS SIZE [-Wcpp]
> 6470 | #warning WHY THIS SIZE
> | ^~~~~~~
> silo_hdf5.c: At top level:
> silo_hdf5.c:6639:2: warning: #warning REMOVE THIS MAYBE [-Wcpp]
> 6639 | #warning REMOVE THIS MAYBE
> | ^~~~~~~
> silo_hdf5.c: In function ‘db_hdf5_WriteObject’:
> silo_hdf5.c:7376:2: warning: #warning COMPATABILITY ISSUE [-Wcpp]
> 7376 | #warning COMPATABILITY ISSUE
> | ^~~~~~~
> silo_hdf5.c: In function ‘db_hdf5_get_var_byte_length’:
> silo_hdf5.c:7749:2: warning: #warning REMOVED db_perror CALLS [-Wcpp]
> 7749 | #warning REMOVED db_perror CALLS
> | ^~~~~~~
> silo_hdf5.c: In function ‘db_hdf5_WriteCKZ’:
> silo_hdf5.c:8395:2: warning: #warning WHAT IF EXISTING DATASET WAS COMPRESSED
> [-Wcpp]
> 8395 | #warning WHAT IF EXISTING DATASET WAS COMPRESSED
> | ^~~~~~~
> silo_hdf5.c:8437:2: warning: #warning COMPARE TO -1 OR TO NEGATIVE [-Wcpp]
> 8437 | #warning COMPARE TO -1 OR TO NEGATIVE
> | ^~~~~~~
> silo_hdf5.c:8459:2: warning: #warning COMPARE TO -1 OR NEGATIVE [-Wcpp]
> 8459 | #warning COMPARE TO -1 OR NEGATIVE
> | ^~~~~~~
> silo_hdf5.c: In function ‘db_hdf5_GetObject’:
> silo_hdf5.c:8684:2: warning: #warning THIS IFDEFD CODE IS IN TRANSITION TO
> BETTER GENERIC OBJECTS [-Wcpp]
> 8684 | #warning THIS IFDEFD CODE IS IN TRANSITION TO BETTER GENERIC OBJECTS
> | ^~~~~~~
> silo_hdf5.c:8781:2: warning: #warning REVISIT THIS CLEANUP CODE. IS THERE A
> BETTER SYMBOLIC VALUE THAN -1 [-Wcpp]
> 8781 | #warning REVISIT THIS CLEANUP CODE. IS THERE A BETTER SYMBOLIC VALUE
> THAN -1
> | ^~~~~~~
> silo_hdf5.c:8786:2: warning: #warning USE FREE() MACRO HERE [-Wcpp]
> 8786 | #warning USE FREE() MACRO HERE
> | ^~~~~~~
> silo_hdf5.c:8798:2: warning: #warning USE FREE() MACRO HERE [-Wcpp]
> 8798 | #warning USE FREE() MACRO HERE
> | ^~~~~~~
> silo_hdf5.c: In function ‘db_hdf5_PutMultimat’:
> silo_hdf5.c:14304:2: warning: #warning REPLACE WITH STRING UTILITIES [-Wcpp]
> 14304 | #warning REPLACE WITH STRING UTILITIES
> | ^~~~~~~
> silo_hdf5.c:14342:2: warning: #warning IS THIS TAKEN CARE OF ELSEWHERE [-Wcpp]
> 14342 | #warning IS THIS TAKEN CARE OF ELSEWHERE
> | ^~~~~~~
> silo_hdf5.c:14352:2: warning: #warning IS THIS TAKEN CARE OF ELSEWHERE [-Wcpp]
> 14352 | #warning IS THIS TAKEN CARE OF ELSEWHERE
> | ^~~~~~~
> cc1: some warnings being treated as errors
> make[4]: *** [Makefile:521: silo_hdf5.lo] Error 1
The full build log is available from:
http://qa-logs.debian.net/2024/03/13/silo-llnl_4.11-3.1_unstable.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20240313;users=lu...@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20240313&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: silo-llnl
Source-Version: 4.11-4
Done: Alastair McKinstry <mckins...@debian.org>
We believe that the bug you reported is fixed in the latest version of
silo-llnl, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1066...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Alastair McKinstry <mckins...@debian.org> (supplier of updated silo-llnl
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 13 Mar 2024 16:46:49 +0000
Source: silo-llnl
Architecture: source
Version: 4.11-4
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry <mckins...@debian.org>
Changed-By: Alastair McKinstry <mckins...@debian.org>
Closes: 1066336
Changes:
silo-llnl (4.11-4) unstable; urgency=medium
.
* Fix implicit function declararation errors. Closes: #1066336
Checksums-Sha1:
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silo-llnl_4.11-4.dsc
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Files:
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