Your message dated Wed, 30 Sep 2009 10:33:43 +0000
with message-id <e1mswvd-0002iy...@ries.debian.org>
and subject line Bug#533976: fixed in bioperl 1.6.1-1
has caused the Debian Bug report #533976,
regarding bioperl: FTBFS: test failures
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
533976: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=533976
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: bioperl
Version: 1.6.0-2
Severity: serious
User: debian...@lists.debian.org
Usertags: qa-ftbfs-20090620 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part:
> t/Align/AlignStats...........................ok
> t/Align/AlignUtil............................ok
> t/Align/SimpleAlign..........................ok
> t/Align/TreeBuild............................ok
> t/Align/Utilities............................ok
> t/AlignIO/AlignIO............................ok
> t/AlignIO/arp................................ok
> t/AlignIO/bl2seq.............................ok
> t/AlignIO/clustalw...........................ok
> t/AlignIO/emboss.............................ok
> t/AlignIO/fasta..............................ok
> t/AlignIO/largemultifasta....................ok
> t/AlignIO/maf................................ok
> t/AlignIO/mase...............................ok
> t/AlignIO/mega...............................ok
> t/AlignIO/meme...............................ok
> t/AlignIO/metafasta..........................ok
> t/AlignIO/msf................................ok
> t/AlignIO/nexus..............................ok
> t/AlignIO/pfam...............................ok
> t/AlignIO/phylip.............................ok
> t/AlignIO/po.................................ok
> t/AlignIO/prodom.............................ok
> t/AlignIO/psi................................ok
> t/AlignIO/selex..............................ok
> t/AlignIO/stockholm..........................ok
> t/AlignIO/xmfa...............................ok
> t/Alphabet...................................ok
> t/Annotation/Annotation......................ok
> t/Annotation/AnnotationAdaptor...............ok
>
> # Failed (TODO) test at t/Assembly/Assembly.t line 35.
> t/Assembly/Assembly..........................ok
> t/Assembly/ContigSpectrum....................ok
> t/Biblio/Biblio..............................ok
> t/Biblio/References..........................ok
> t/Biblio/biofetch............................skipped
> all skipped: Network tests have not been requested
> t/Biblio/eutils..............................skipped
> all skipped: Network tests have not been requested
> t/ClusterIO/ClusterIO........................ok
> t/ClusterIO/SequenceFamily...................ok
> t/ClusterIO/unigene..........................ok
> t/Coordinate/CoordinateGraph.................ok
> t/Coordinate/CoordinateMapper................ok
> t/Coordinate/GeneCoordinateMapper............ok
> t/LiveSeq/Chain..............................ok
> t/LiveSeq/LiveSeq............................ok
> t/LiveSeq/Mutation...........................ok
> t/LiveSeq/Mutator............................ok
> t/LocalDB/BioDBGFF...........................ok
> 11/279 skipped: various reasons
> t/LocalDB/BlastIndex.........................ok
> t/LocalDB/DBFasta............................ok
> t/LocalDB/DBQual.............................ok
> t/LocalDB/Flat...............................ok
> t/LocalDB/Index..............................ok
> t/LocalDB/Registry...........................ok
> 11/14 skipped: various reasons
> t/LocalDB/SeqFeature.........................ok
> t/LocalDB/transfac_pro.......................ok
> t/Map/Cyto...................................ok
> t/Map/Linkage................................ok
> t/Map/Map....................................ok
> 19/267 skipped: various reasons
> t/Map/MapIO..................................ok
> t/Map/MicrosatelliteMarker...................ok
> t/Map/Physical...............................ok
> t/Matrix/IO/masta............................ok
> t/Matrix/IO/psm..............................ok
> t/Matrix/InstanceSite........................ok
> t/Matrix/Matrix..............................ok
> t/Matrix/ProtMatrix..........................ok
> t/Matrix/ProtPsm.............................ok
> 10/14 skipped: various reasons
> t/Matrix/SiteMatrix..........................ok
> t/Ontology/GOterm............................ok
> t/Ontology/GraphAdaptor......................ok
> t/Ontology/IO/go.............................ok
> t/Ontology/IO/interpro.......................ok
> t/Ontology/IO/obo............................ok
> t/Ontology/Ontology..........................ok
> t/Ontology/OntologyEngine....................ok
> t/Ontology/OntologyStore.....................skipped
> all skipped: Network tests have not been requested
> t/Ontology/Relationship......................ok
> t/Ontology/RelationshipType..................ok
> t/Ontology/Term..............................ok
> t/Perl.......................................ok
> 10/29 skipped: various reasons
> t/Phenotype/Correlate........................ok
> t/Phenotype/MeSH.............................ok
> t/Phenotype/Measure..........................ok
> t/Phenotype/MiniMIMentry.....................ok
> t/Phenotype/OMIMentry........................ok
> t/Phenotype/OMIMentryAllelicVariant..........ok
> t/Phenotype/OMIMparser.......................ok
> t/Phenotype/Phenotype........................ok
> t/PodSyntax..................................skipped
> all skipped: Test::Pod 1.00 required for testing POD
> t/PopGen/Coalescent..........................ok
> t/PopGen/HtSNP...............................ok
> t/PopGen/MK..................................ok
> 4/46 skipped: various reasons
> t/PopGen/PopGen..............................ok
> t/PopGen/PopGenSims..........................ok
> t/PopGen/TagHaplotype........................ok
> t/RemoteDB/BioFetch..........................skipped
> all skipped: Network tests have not been requested
> t/RemoteDB/CUTG..............................ok
> 14/37 skipped: various reasons
> t/RemoteDB/DB................................skipped
> all skipped: Network tests have not been requested
> t/RemoteDB/EMBL..............................skipped
> all skipped: Network tests have not been requested
> t/RemoteDB/EUtilities........................skipped
> all skipped: The optional module XML::Simple (or dependencies
> thereof) was not installed
> t/RemoteDB/HIV/HIV...........................skipped
> all skipped: The optional module XML::Simple (or dependencies
> thereof) was not installed
> t/RemoteDB/HIV/HIVAnnotProcessor.............ok
> t/RemoteDB/HIV/HIVQuery......................skipped
> all skipped: The optional module XML::Simple (or dependencies
> thereof) was not installed
> t/RemoteDB/HIV/HIVQueryHelper................skipped
> all skipped: The optional module XML::Simple (or dependencies
> thereof) was not installed
> t/RemoteDB/RefSeq............................ok
> 10/16 skipped: various reasons
> t/RemoteDB/SeqHound..........................skipped
> all skipped: Network tests have not been requested
> t/RemoteDB/SeqRead_fail......................skipped
> all skipped: Network tests have not been requested
> t/RemoteDB/SeqVersion........................ok
> 8/10 skipped: various reasons
> t/RemoteDB/Taxonomy..........................ok
> 44/103 skipped: various reasons
> t/Restriction/Analysis.......................ok
> t/Restriction/Gel............................ok
>
> # Failed (TODO) test at t/Restriction/IO.t line 31.
> t/Restriction/IO.............................ok
> 3/18 skipped: various reasons
> t/Root/Exception.............................ok
> t/Root/RootI.................................ok
> t/Root/RootIO................................ok
> 2/31 skipped: various reasons
> t/Root/Storable..............................ok
> t/Root/Tempfile..............................ok
> t/Root/Utilities.............................ok
> t/SearchDist.................................skipped
> all skipped: The optional module Bio::Ext::Align (or dependencies
> thereof) was not installed
> t/SearchIO/CigarString.......................ok
> t/SearchIO/GbrowseGFF........................ok
> t/SearchIO/SearchIO..........................ok
> t/SearchIO/SimilarityPair....................ok
> t/SearchIO/Writer/HTMLWriter.................ok
> t/SearchIO/Writer/HitTableWriter.............ok
>
> # Failed (TODO) test at t/SearchIO/blast.t line 527.
> # '0.852'
> # >
> # '0.9'
>
> # Failed (TODO) test at t/SearchIO/blast.t line 528.
> # '1.599'
> # <=
> # '1'
> t/SearchIO/blast.............................ok
>
> # Failed (TODO) test at t/SearchIO/blast_pull.t line 260.
> # got: '0.946'
> # expected: '0.943'
> t/SearchIO/blast_pull........................ok
> t/SearchIO/blasttable........................ok
>
> --------------------- WARNING ---------------------
> MSG: error in parsing a report:
> http error : Operation in progress
>
> ---------------------------------------------------
>
> # Failed test at t/SearchIO/blastxml.t line 243.
> # got: '0'
> # expected: '1'
> Can't call method "database_name" on an undefined value at
> t/SearchIO/blastxml.t line 244.
> # Looks like you planned 298 tests but only ran 148.
> # Looks like you failed 1 test of 148 run.
> # Looks like your test died just after 148.
> t/SearchIO/blastxml..........................dubious
> Test returned status 255 (wstat 65280, 0xff00)
> DIED. FAILED tests 148-298
> Failed 151/298 tests, 49.33% okay
> t/SearchIO/cross_match.......................ok
> t/SearchIO/erpin.............................ok
> t/SearchIO/exonerate.........................ok
> 4/45 skipped: various reasons
> t/SearchIO/fasta.............................ok
> t/SearchIO/hmmer.............................ok
> t/SearchIO/hmmer_pull........................ok
> t/SearchIO/infernal..........................ok
> t/SearchIO/megablast.........................ok
> t/SearchIO/psl...............................ok
> t/SearchIO/rnamotif..........................ok
> t/SearchIO/sim4..............................ok
> t/SearchIO/waba..............................ok
> t/SearchIO/wise..............................ok
> t/Seq/DBLink.................................ok
> t/Seq/EncodedSeq.............................ok
> t/Seq/LargeLocatableSeq......................ok
> t/Seq/LargePSeq..............................ok
>
> # Failed (TODO) test at t/Seq/LocatableSeq.t line 45.
> # got: 'Bio::Location::Simple=HASH(0x306cf90)'
> # expected: undef
>
> # Failed (TODO) test at t/Seq/LocatableSeq.t line 284.
> # got: '\-\.=~'
> # expected: '-\?'
>
> # Failed (TODO) test at t/Seq/LocatableSeq.t line 286.
> # '19'
> # ne
> # '19'
> t/Seq/LocatableSeq...........................ok
> t/Seq/MetaSeq................................ok
> t/Seq/PrimaryQual............................ok
> t/Seq/PrimarySeq.............................ok
> t/Seq/PrimedSeq..............................ok
> t/Seq/Quality................................ok
> t/Seq/Seq....................................ok
> t/Seq/WithQuality............................ok
> t/SeqEvolution...............................ok
> t/SeqFeature/FeatureIO.......................ok
> t/SeqFeature/Location........................ok
> t/SeqFeature/LocationFactory.................ok
> t/SeqFeature/Primer..........................ok
> t/SeqFeature/Range...........................ok
> t/SeqFeature/RangeI..........................ok
> t/SeqFeature/SeqAnalysisParser...............ok
> t/SeqFeature/SeqFeatAnnotated................skipped
> all skipped: Network tests have not been requested
> t/SeqFeature/SeqFeatCollection...............ok
> t/SeqFeature/SeqFeature......................ok
> 7/214 skipped: various reasons
> t/SeqFeature/SeqFeaturePrimer................ok
> t/SeqFeature/Unflattener.....................ok
> t/SeqFeature/Unflattener2....................ok
> t/SeqIO......................................ok
> 6/41 skipped: various reasons
> t/SeqIO/Handler..............................ok
> t/SeqIO/MultiFile............................ok
> t/SeqIO/Multiple_fasta.......................ok
> t/SeqIO/SeqBuilder...........................ok
> t/SeqIO/Splicedseq...........................ok
> t/SeqIO/abi..................................skipped
> all skipped: The optional module Bio::SeqIO::staden::read (or
> dependencies thereof) was not installed
> t/SeqIO/ace..................................ok
> t/SeqIO/agave................................ok
> t/SeqIO/alf..................................skipped
> all skipped: The optional module Bio::SeqIO::staden::read (or
> dependencies thereof) was not installed
> t/SeqIO/asciitree............................ok
> t/SeqIO/bsml.................................ok
> http error : Operation in progress
> # Looks like you planned 15 tests but only ran 1.
> # Looks like your test died just after 1.
> t/SeqIO/bsml_sax.............................dubious
> Test returned status 255 (wstat 65280, 0xff00)
> DIED. FAILED tests 2-15
> Failed 14/15 tests, 6.67% okay
> t/SeqIO/chadoxml.............................ok
> t/SeqIO/chaos................................ok
> t/SeqIO/chaosxml.............................ok
> t/SeqIO/ctf..................................skipped
> all skipped: The optional module Bio::SeqIO::staden::read (or
> dependencies thereof) was not installed
> t/SeqIO/embl.................................ok
> t/SeqIO/entrezgene...........................ok
> t/SeqIO/excel................................ok
> t/SeqIO/exp..................................skipped
> all skipped: The optional module Bio::SeqIO::staden::read (or
> dependencies thereof) was not installed
> t/SeqIO/fasta................................ok
> 4/18 skipped: various reasons
> t/SeqIO/fastq................................ok
> t/SeqIO/flybase_chadoxml.....................ok
> t/SeqIO/game.................................ok
>
> # Failed (TODO) test 'primary_id'
> # at t/SeqIO/gcg.t line 54.
> # got: 'Bio::PrimarySeq=HASH(0x2c4d170)'
> # expected: 'roa1_drome'
> t/SeqIO/gcg..................................ok
> 4/17 skipped: various reasons
> t/SeqIO/genbank..............................ok
> t/SeqIO/interpro.............................ok
> t/SeqIO/kegg.................................ok
> t/SeqIO/largefasta...........................ok
> t/SeqIO/lasergene............................ok
> t/SeqIO/locuslink............................ok
> t/SeqIO/metafasta............................ok
> t/SeqIO/phd..................................ok
> t/SeqIO/pir..................................ok
> t/SeqIO/pln..................................skipped
> all skipped: The optional module Bio::SeqIO::staden::read (or
> dependencies thereof) was not installed
> t/SeqIO/qual.................................ok
> t/SeqIO/raw..................................ok
> 4/14 skipped: various reasons
>
> # Failed (TODO) test 'accuracies'
> # at t/SeqIO/scf.t line 78.
> # got: 'ARRAY(0x1971e68)'
> # expected: '482'
> t/SeqIO/scf..................................ok
> t/SeqIO/strider..............................ok
> t/SeqIO/swiss................................ok
> t/SeqIO/tab..................................ok
> t/SeqIO/table................................ok
> t/SeqIO/tigr.................................ok
> t/SeqIO/tigrxml..............................ok
> t/SeqIO/tinyseq..............................ok
> t/SeqIO/ztr..................................skipped
> all skipped: The optional module Bio::SeqIO::staden::read (or
> dependencies thereof) was not installed
> t/SeqTools/CodonTable........................ok
> t/SeqTools/ECnumber..........................ok
> t/SeqTools/GuessSeqFormat....................ok
> t/SeqTools/OddCodes..........................ok
> t/SeqTools/SeqPattern........................ok
> t/SeqTools/SeqStats..........................ok
> t/SeqTools/SeqUtils..........................ok
> t/SeqTools/SeqWords..........................ok
> t/Species....................................ok
> 5/21 skipped: various reasons
> t/Structure/IO...............................ok
> t/Structure/Structure........................ok
> t/Symbol.....................................ok
> t/TaxonTree..................................skipped
> all skipped: All tests are being skipped, probably because the
> module(s) being tested here are now deprecated
> t/Tools/Alignment/Consed.....................ok
> t/Tools/Analysis/DNA/ESEfinder...............skipped
> all skipped: Network tests have not been requested
> t/Tools/Analysis/Protein/Domcut..............skipped
> all skipped: Network tests have not been requested
> t/Tools/Analysis/Protein/ELM.................skipped
> all skipped: Network tests have not been requested
> t/Tools/Analysis/Protein/GOR4................skipped
> all skipped: Network tests have not been requested
> t/Tools/Analysis/Protein/HNN.................skipped
> all skipped: Network tests have not been requested
> t/Tools/Analysis/Protein/Mitoprot............skipped
> all skipped: Network tests have not been requested
> t/Tools/Analysis/Protein/NetPhos.............skipped
> all skipped: Network tests have not been requested
> t/Tools/Analysis/Protein/Scansite............ok
> 6/14 skipped: various reasons
> t/Tools/Analysis/Protein/Sopma...............ok
> 12/16 skipped: various reasons
> t/Tools/EMBOSS/Palindrome....................ok
> t/Tools/EUtilities/EUtilParameters...........ok
> t/Tools/EUtilities/egquery...................skipped
> all skipped: The optional module XML::Simple (or dependencies
> thereof) was not installed
> t/Tools/EUtilities/einfo.....................skipped
> all skipped: The optional module XML::Simple (or dependencies
> thereof) was not installed
> t/Tools/EUtilities/elink_acheck..............skipped
> all skipped: The optional module XML::Simple (or dependencies
> thereof) was not installed
> t/Tools/EUtilities/elink_lcheck..............skipped
> all skipped: The optional module XML::Simple (or dependencies
> thereof) was not installed
> t/Tools/EUtilities/elink_llinks..............skipped
> all skipped: The optional module XML::Simple (or dependencies
> thereof) was not installed
> t/Tools/EUtilities/elink_ncheck..............skipped
> all skipped: The optional module XML::Simple (or dependencies
> thereof) was not installed
> t/Tools/EUtilities/elink_neighbor............skipped
> all skipped: The optional module XML::Simple (or dependencies
> thereof) was not installed
> t/Tools/EUtilities/elink_neighbor_history....skipped
> all skipped: The optional module XML::Simple (or dependencies
> thereof) was not installed
> t/Tools/EUtilities/elink_scores..............skipped
> all skipped: The optional module XML::Simple (or dependencies
> thereof) was not installed
> t/Tools/EUtilities/epost.....................skipped
> all skipped: The optional module XML::Simple (or dependencies
> thereof) was not installed
> t/Tools/EUtilities/esearch...................skipped
> all skipped: The optional module XML::Simple (or dependencies
> thereof) was not installed
> t/Tools/EUtilities/espell....................skipped
> all skipped: The optional module XML::Simple (or dependencies
> thereof) was not installed
> t/Tools/EUtilities/esummary..................skipped
> all skipped: The optional module XML::Simple (or dependencies
> thereof) was not installed
> t/Tools/Est2Genome...........................ok
> t/Tools/FootPrinter..........................ok
> t/Tools/GFF..................................ok
> t/Tools/Geneid...............................ok
> t/Tools/Genewise.............................ok
> t/Tools/Genomewise...........................ok
> t/Tools/Genpred..............................ok
> t/Tools/Hmmer................................ok
> t/Tools/IUPAC................................ok
> t/Tools/Lucy.................................ok
> t/Tools/Match................................ok
> t/Tools/Phylo/Gerp...........................ok
> t/Tools/Phylo/Molphy.........................ok
> t/Tools/Phylo/PAML...........................ok
> t/Tools/Phylo/Phylip/ProtDist................ok
> t/Tools/Primer3..............................ok
> t/Tools/Promoterwise.........................ok
> t/Tools/Pseudowise...........................ok
> t/Tools/QRNA.................................ok
> t/Tools/RandDistFunctions....................ok
> t/Tools/RepeatMasker.........................ok
> t/Tools/Run/RemoteBlast......................skipped
> all skipped: Network tests have not been requested
> t/Tools/Run/StandAloneBlast..................ok
> 12/45 skipped: various reasons
> t/Tools/Run/WrapperBase......................ok
> t/Tools/Seg..................................ok
> t/Tools/SiRNA................................ok
> t/Tools/Sigcleave............................ok
> t/Tools/Signalp..............................ok
> t/Tools/Signalp/ExtendedSignalp..............ok
> t/Tools/Sim4.................................ok
> t/Tools/Spidey/Spidey........................ok
> t/Tools/TandemRepeatsFinder..................ok
> t/Tools/TargetP..............................ok
> t/Tools/Tmhmm................................ok
> t/Tools/ePCR.................................ok
> t/Tools/pICalculator.........................ok
> t/Tools/rnamotif.............................skipped
> all skipped: All tests are being skipped, probably because the
> module(s) being tested here are now deprecated
> t/Tools/tRNAscanSE...........................ok
> t/Tree/Compatible............................ok
> t/Tree/Node..................................ok
> t/Tree/PhyloNetwork/Factory..................ok
> t/Tree/PhyloNetwork/GraphViz.................ok
> t/Tree/PhyloNetwork/MuVector.................ok
> t/Tree/PhyloNetwork/PhyloNetwork.............ok
> t/Tree/PhyloNetwork/RandomFactory............skipped
> all skipped: The optional module Math::Random (or dependencies
> thereof) was not installed
> t/Tree/PhyloNetwork/TreeFactory..............ok
> t/Tree/RandomTreeFactory.....................ok
> t/Tree/Tree..................................ok
> t/Tree/TreeIO................................ok
> t/Tree/TreeIO/lintree........................ok
> t/Tree/TreeIO/newick.........................ok
> t/Tree/TreeIO/nexus..........................ok
> t/Tree/TreeIO/nhx............................ok
> t/Tree/TreeIO/phyloxml.......................ok
> Use of uninitialized value $txt[0] in join or string at
> /usr/share/perl5/SVG/Element.pm line 1195, <GEN0> line 1.
> t/Tree/TreeIO/svggraph.......................ok
> t/Tree/TreeIO/tabtree........................ok
> t/Tree/TreeStatistics........................ok
> t/Variation/AAChange.........................ok
> t/Variation/AAReverseMutate..................ok
> t/Variation/Allele...........................ok
> t/Variation/DNAMutation......................ok
> t/Variation/RNAChange........................ok
> t/Variation/SNP..............................ok
> t/Variation/SeqDiff..........................ok
> Failed 2/318 test programs. 165/16485 subtests failed.
> t/Variation/Variation_IO.....................ok
> Failed Test Stat Wstat Total Fail List of Failed
> -------------------------------------------------------------------------------
> t/SearchIO/blastxml.t 255 65280 298 301 148-298
> t/SeqIO/bsml_sax.t 255 65280 15 28 2-15
> 45 tests and 210 subtests skipped.
> Failed 2/318 test scripts. 165/16485 subtests failed.
> Files=318, Tests=16485, 172 wallclock secs (81.32 cusr + 6.65 csys = 87.97
> CPU)
> make: *** [build-stamp] Error 255
The full build log is available from:
http://people.debian.org/~lucas/logs/2009/06/20/bioperl_1.6.0-2_lsid64.buildlog
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on about 50 AMD64 nodes
of the Grid'5000 platform, using a clean chroot. Internet was not
accessible from the build systems.
--
| Lucas Nussbaum
| lu...@lucas-nussbaum.net http://www.lucas-nussbaum.net/ |
| jabber: lu...@nussbaum.fr GPG: 1024D/023B3F4F |
--- End Message ---
--- Begin Message ---
Source: bioperl
Source-Version: 1.6.1-1
We believe that the bug you reported is fixed in the latest version of
bioperl, which is due to be installed in the Debian FTP archive:
bioperl_1.6.1-1.diff.gz
to pool/main/b/bioperl/bioperl_1.6.1-1.diff.gz
bioperl_1.6.1-1.dsc
to pool/main/b/bioperl/bioperl_1.6.1-1.dsc
bioperl_1.6.1-1_all.deb
to pool/main/b/bioperl/bioperl_1.6.1-1_all.deb
bioperl_1.6.1.orig.tar.gz
to pool/main/b/bioperl/bioperl_1.6.1.orig.tar.gz
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 533...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Charles Plessy <ple...@debian.org> (supplier of updated bioperl package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Wed, 30 Sep 2009 18:56:42 +0900
Source: bioperl
Binary: bioperl
Architecture: source all
Version: 1.6.1-1
Distribution: unstable
Urgency: low
Maintainer: Debian-Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Charles Plessy <ple...@debian.org>
Description:
bioperl - Perl tools for computational molecular biology
Closes: 533976
Changes:
bioperl (1.6.1-1) unstable; urgency=low
.
* New upstream release with new features and many corrections in the
test suite (Closes: #533976).
* debian/rules: trigger network tests with DEB_MAINTAINER_MODE.
* debian/control:
- Build-depend on perl-modules >= 5.10.1 to have ExtUtils::Manifest 1.52 or
higher, and on libtest-pod-perl.
- Added liblist-moreutils-perl, libspreadsheet-writeexcel-perl,
libsvg-perl, and libxml-simple-perl, libdbd-pg-perl, libdbd-mysql-perl,
libdbd-sqlite3-perl to build and package dependencies (needed by some
components of Bioperl, and therefore for the tests).
Checksums-Sha1:
f530a36bb5c279ceb00302241f3bc293893c0c1f 2030 bioperl_1.6.1-1.dsc
bf08ecafaae82c20e0e32c134005064e99ca4266 10462526 bioperl_1.6.1.orig.tar.gz
591324529fbbcf2c8ae3731722bd4ab28ce26932 9256 bioperl_1.6.1-1.diff.gz
5d8caab7c010f037d50ce668fb58ff666a360eed 6374574 bioperl_1.6.1-1_all.deb
Checksums-Sha256:
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bioperl_1.6.1-1_all.deb
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bioperl_1.6.1-1_all.deb
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