Your message dated Wed, 27 Nov 2013 10:49:10 +0000
with message-id <e1vlcga-0008tk...@franck.debian.org>
and subject line Bug#728249: fixed in mpqc 2.3.1-16
has caused the Debian Bug report #728249,
regarding FTBFS on mips, mipsel and s390x due to -Werror=format-security
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
728249: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=728249
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: mpqc
Version: 2.3.1-15
Severity: serious
Tags: patch upstream
Justification: fails to build from source (but built successfully in the past)
mpqc fails to build from source on mips, mipsel and s390x due to the
following error:
| atominfo.cc: In member function 'int sc::AtomInfo::string_to_Z(const string&,
int)':
| atominfo.cc:496:75: warning: deprecated conversion from string constant to
'char*' [-Wwrite-strings]
| ExEnv::err0() << sprintf("AtomInfo: invalid name: %s\n",name.c_str());
| ^
| atominfo.cc:496:75: error: format not a string literal and no format
arguments [-Werror=format-security]
| cc1plus: some warnings being treated as errors
Strangely this doesn't happen on other architectures where only the first
warning is printed
| atominfo.cc: In member function 'int sc::AtomInfo::string_to_Z(const string&,
int)':
| atominfo.cc:496:75: warning: deprecated conversion from string constant to
'char*' [-Wwrite-strings]
Looking at the (very weird) code, the error is obviously valid:
| ExEnv::err0() << sprintf("AtomInfo: invalid name: %s\n",name.c_str());
Considering I understood what the upstream author wanted to do, here is
a patch to fix the issue:
--- mpqc-2.3.1.orig/src/lib/chemistry/molecule/atominfo.cc
+++ mpqc-2.3.1/src/lib/chemistry/molecule/atominfo.cc
@@ -493,7 +493,7 @@ AtomInfo::string_to_Z(const std::string
if (iname != symbol_to_Z_.end()) return iname->second;
if (allow_exceptions) {
- ExEnv::err0() << sprintf("AtomInfo: invalid name: %s\n",name.c_str());
+ ExEnv::err0() << ("AtomInfo: invalid name: " + name + "\n").c_str();
throw std::runtime_error("invalid atom name");
}
-- System Information:
Debian Release: jessie/sid
APT prefers unstable
APT policy: (500, 'unstable')
Architecture: mipsel (mips64)
Kernel: Linux 3.2.0-4-5kc-malta
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/bash
--- End Message ---
--- Begin Message ---
Source: mpqc
Source-Version: 2.3.1-16
We believe that the bug you reported is fixed in the latest version of
mpqc, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 728...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael Banck <mba...@debian.org> (supplier of updated mpqc package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Wed, 27 Nov 2013 10:53:11 +0100
Source: mpqc
Binary: mpqc mpqc-openmpi libsc-dev libsc7 libsc-data libsc-doc mpqc-support
Architecture: source amd64 all
Version: 2.3.1-16
Distribution: unstable
Urgency: low
Maintainer: Michael Banck <mba...@debian.org>
Changed-By: Michael Banck <mba...@debian.org>
Description:
libsc-data - Scientific Computing Toolkit (basis set and atom data)
libsc-dev - Scientific Computing Toolkit (development files)
libsc-doc - Scientific Computing Toolkit (documentation)
libsc7 - Scientific Computing Toolkit (library)
mpqc - Massively Parallel Quantum Chemistry Program
mpqc-openmpi - Massively Parallel Quantum Chemistry Program (OpenMPI
transitiona
mpqc-support - Massively Parallel Quantum Chemistry Program (support tools)
Closes: 728249
Changes:
mpqc (2.3.1-16) unstable; urgency=low
.
* debian/patches/16_format-security.patch: New patches, fixes a FTBFS error
on mpich arches, by Aurelien Jarno; closes: #728249.
Checksums-Sha1:
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Checksums-Sha256:
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Files:
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mpqc-openmpi_2.3.1-16_all.deb
918a9fcb94d572915a94026cf1c75799 241578 libdevel optional
libsc-dev_2.3.1-16_amd64.deb
5de768cd069ad97ca894e02a4d0989b3 2382820 libs optional
libsc7_2.3.1-16_amd64.deb
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libsc-data_2.3.1-16_all.deb
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libsc-doc_2.3.1-16_all.deb
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mpqc-support_2.3.1-16_amd64.deb
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