Your message dated Fri, 26 Jun 2015 11:00:13 +0000 with message-id <e1z8rmj-0007a2...@franck.debian.org> and subject line Bug#763218: fixed in python-pysam 0.8.3+ds1-1 has caused the Debian Bug report #763218, regarding python-pysam: FTBFS: Tests failures to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 763218: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=763218 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: python-pysam Version: 0.7.7-1 Severity: serious Tags: jessie sid User: debian...@lists.debian.org Usertags: qa-ftbfs-20140926 qa-ftbfs Justification: FTBFS on amd64 Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > ====================================================================== > FAIL: testBAM (__main__.TestUnmappedReads) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "./pysam_test_offline.py", line 998, in testBAM > self.assertEqual( len(list(samfile.fetch( until_eof = True))), 2 ) > AssertionError: 0 != 2 > > ---------------------------------------------------------------------- > Ran 158 tests in 9.110s > > FAILED (failures=2, errors=31) > E: pybuild pybuild:256: test: plugin custom failed with: exit code=1: cd > tests && PYTHONPATH=/«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build python2.7 > ./pysam_test_offline.py > dh_auto_test: pybuild --test -i python{version} -p 2.7 --dir . returned exit > code 13 > make[1]: *** [override_dh_auto_test] Error 13 > debian/rules:29: recipe for target 'override_dh_auto_test' failed The full build log is available from: http://aws-logs.debian.net/ftbfs-logs/2014/09/26/python-pysam_0.7.7-1_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.
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--- Begin Message ---Source: python-pysam Source-Version: 0.8.3+ds1-1 We believe that the bug you reported is fixed in the latest version of python-pysam, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 763...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Afif Elghraoui <a...@ghraoui.name> (supplier of updated python-pysam package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Thu, 25 Jun 2015 10:44:30 +0200 Source: python-pysam Binary: python-pysam python3-pysam python-pysam-tests Architecture: source all amd64 Version: 0.8.3+ds1-1 Distribution: experimental Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@ghraoui.name> Description: python-pysam - interface for the SAM/BAM sequence alignment and mapping format ( python-pysam-tests - interface for the SAM/BAM sequence alignment and mapping format ( python3-pysam - interface for the SAM/BAM sequence alignment and mapping format ( Closes: 763218 Changes: python-pysam (0.8.3+ds1-1) experimental; urgency=medium . * Team upload. . [ Jorge Soares ] * New upstream version * provide python3-pysam . [ Charles Plessy ] * Requires Python 2.7 or higher. . [ Andreas Tille ] * Link against htslib * d/watch: dversionmangle . [ Afif Elghraoui ] * New upstream releases (Closes: #763218) * Remove unnecessary test-suite declaration in d/control * Remove nonexistent files from copyright explanations * Allow building of the package when non-ASCII characters are in the path * Add to package long description * Resolve lintian "duplicated-compressed-file" * Make package descriptions unique * Remove extra license definitions from d/copyright * Fix spelling errors in source distribution (forwarded upstream as well) * Add lintian overrides * Exclude bundled htslib convenience-copy * Provide get-orig-source rule * Support building with missing htslib directory * Add dependency on cython for autopkgtests to provide pyximport * Revamp debian/copyright Checksums-Sha1: 9390cade7f2bab2805ef276bcd9eb65516fd2e73 2324 python-pysam_0.8.3+ds1-1.dsc b12a55c6659ba3f28bdf43af570029b4fd64786f 929764 python-pysam_0.8.3+ds1.orig.tar.xz 2b1f654a87b8f4461a05a8e436c45aa7505354cc 7576 python-pysam_0.8.3+ds1-1.debian.tar.xz ab4eb79e69636e6974b13fcdf7991e0c305d6440 772260 python-pysam-tests_0.8.3+ds1-1_all.deb 57d076d735f3fbef3fd481b4f54df2ea44d8b9c4 771910 python-pysam_0.8.3+ds1-1_amd64.deb bcc98eacfb23247413a98be590764b1cb77aebd3 770206 python3-pysam_0.8.3+ds1-1_amd64.deb Checksums-Sha256: 0a016acbf6f38459bf9ada9df5ceb9813cf18cce990c8de2191574e4240e9423 2324 python-pysam_0.8.3+ds1-1.dsc abc56cbf25097f9408dbdd8df1b010a7bc20a16184e0e05a20c31c8aac3e6f36 929764 python-pysam_0.8.3+ds1.orig.tar.xz 2128efed4a0f0c6bfeab5b356efceb2f3ab8c194772e21771f135027c63cc932 7576 python-pysam_0.8.3+ds1-1.debian.tar.xz 34db2ab815c9f67109196939a0fadc1e48da63d07d1c98a3e6b351c3fc12796a 772260 python-pysam-tests_0.8.3+ds1-1_all.deb 9700540bdf81a29cd1d432bab4ebfb83fd3b85d0bd897cb34bbc770d92fcb16a 771910 python-pysam_0.8.3+ds1-1_amd64.deb 800b51e7b0738ffcd9b447fd485d200b8e2d9e03fc6ce4f372dcb9954e21185d 770206 python3-pysam_0.8.3+ds1-1_amd64.deb Files: 8b3a23a813cca542d93d8c5d82ae627c 2324 python optional python-pysam_0.8.3+ds1-1.dsc b76a9d74440d18fffb5436648b103dcb 929764 python optional python-pysam_0.8.3+ds1.orig.tar.xz 4ec4b242611c44dc893e360e265e52b4 7576 python optional python-pysam_0.8.3+ds1-1.debian.tar.xz 14472d1191f539f198ab919fed020187 772260 python optional python-pysam-tests_0.8.3+ds1-1_all.deb d85a2cbb349a1115c7cb3611ba9901c9 771910 python optional python-pysam_0.8.3+ds1-1_amd64.deb e807b2cbc77f175c09674594ed2095dc 770206 python optional python3-pysam_0.8.3+ds1-1_amd64.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJVjPXnAAoJEFeKBJTRxkbRxA0P/RtBnidTTT+r4yz/drBR+FDB uNwfiMkxwighNdhBWPbWwxmJaRlwSAEeoJemGCBox9VZqw9kycN6BBnS3BGG73Fb 1oArZuebqErZW2G/pErZyHl/zvm1EuLqsp3J9LlL0FU4Tsr+Bl9dQ0l+J5/NXfuG C92j31xn1+CYRVh7rcik+CnHUiIZ+ojX3MjkUhaaUe1bpfeRoH4ggEsPGiOpf05Y K2VbznK33CVuPMruiYwpK+EzBf+MyQXk8YVanBRLOOPFQC5J/IC0nPb+vX/PmsyC fTyFTDY/DAgdp6pAu6lcbc9n4IKxfgogit9RQYGLpNigq84kBpbpsi0FhlcAvWNh tNPVfDXZY7WcoIYuNL0cw0AIcaoKEFMNSLsNSzYaDw8T5ZK0v6PgvWSqLxZIg2Xr CJYVPV/ofym36Zgd6dCY96VaimWtyC4DKrcx8p51baKxaByUMdZbNnXSK46kqrdW 7RMUy2KA1afoKwG4gcx5JhkeFJ7v94BaAwNE/O9qgAr+U4wPdWn91dhZkTYx5FGJ ua2bPu66+Lme819/Jnj3WjimPhFllUKoGlIfF3HW75qETert26eGpdJbRnq27sA1 zv0MgJDPrUZmFnwgQ3l9jV5kbXTqcB4uFJyngcPVK1ZW7gOLsKHisz5VRtCvj+9y 6cDt1ORp8ZvRxdgGQ8PR =oerc -----END PGP SIGNATURE-----
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