Your message dated Wed, 15 Oct 2014 06:04:20 +0000
with message-id <e1xehh6-0002dj...@franck.debian.org>
and subject line Bug#765285: fixed in mapsembler2 2.2.3+dfsg-1
has caused the Debian Bug report #765285,
regarding mapsembler2: FTBFS on non-x86: xmmintrin.h: No such file or directory
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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immediately.)
--
765285: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=765285
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: mapsembler2
Version: 2.2.1+dfsg-3
Severity: serious
Justification: fails to build from source (but built successfully in the past)
mapsembler2 FTBFS on non x86 architectures with:
| [ 27%] Building CXX object
ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o
| In file included from
/«BUILDDIR»/mapsembler2-2.2.1+dfsg/mapsembler2_extremities/build/ext/gatb-core/include/emphf/mphf.hpp:5:0,
| from
/«BUILDDIR»/mapsembler2-2.2.1+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/MPHF.hpp:30,
| from
/«BUILDDIR»/mapsembler2-2.2.1+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:39,
| from
/«BUILDDIR»/mapsembler2-2.2.1+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20:
|
/«BUILDDIR»/mapsembler2-2.2.1+dfsg/mapsembler2_extremities/build/ext/gatb-core/include/emphf/bitpair_vector.hpp:3:23:
fatal error: xmmintrin.h: No such file or directory
| #include <xmmintrin.h>
| ^
| compilation terminated.
| make[4]: ***
[ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o]
Error 1
| ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build.make:330: recipe for
target
'ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o'
failed
See
https://buildd.debian.org/status/fetch.php?pkg=mapsembler2&arch=arm64&ver=2.2.1+dfsg-3&stamp=1412832848
for a full build log.
Cheers
--
Sebastian Ramacher
signature.asc
Description: Digital signature
--- End Message ---
--- Begin Message ---
Source: mapsembler2
Source-Version: 2.2.3+dfsg-1
We believe that the bug you reported is fixed in the latest version of
mapsembler2, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 765...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Olivier Sallou <osal...@debian.org> (supplier of updated mapsembler2 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Fri, 19 Sep 2014 13:41:47 +0200
Source: mapsembler2
Binary: mapsembler2
Architecture: source amd64
Version: 2.2.3+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Olivier Sallou <osal...@debian.org>
Description:
mapsembler2 - bioinformatics targeted assembly software
Closes: 765285
Changes:
mapsembler2 (2.2.3+dfsg-1) unstable; urgency=medium
.
* New upstream release
* Fix some compilation issues
* Fix FTBS on non x86 (Closes: #765285).
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mapsembler2_2.2.3+dfsg-1.debian.tar.xz
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mapsembler2_2.2.3+dfsg-1_amd64.deb
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Files:
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mapsembler2_2.2.3+dfsg-1_amd64.deb
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mapsembler2_2.2.3+dfsg-1.dsc
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mapsembler2_2.2.3+dfsg.orig.tar.gz
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mapsembler2_2.2.3+dfsg-1.debian.tar.xz
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