Your message dated Tue, 22 Sep 2015 15:37:43 +0000 with message-id <e1zepdx-0001om...@franck.debian.org> and subject line Bug#799698: fixed in samtools 1.2-3 has caused the Debian Bug report #799698, regarding samtools: Unknown command "faidx" on (kfreebsd-)i386 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 799698: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=799698 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: samtools Version: 1.2-2 Severity: serious Justification: fails to build from source Builds of python-pysam for i386 and kfreebsd-i386 failed: samtools faidx ex1.fa Unknown command "faidx". This error appears to indicate a deficiency in samtools; could you please take a look? Thanks!
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--- Begin Message ---Source: samtools Source-Version: 1.2-3 We believe that the bug you reported is fixed in the latest version of samtools, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 799...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Afif Elghraoui <a...@ghraoui.name> (supplier of updated samtools package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Tue, 22 Sep 2015 06:42:01 -0700 Source: samtools Binary: samtools samtools-test Architecture: source all amd64 Version: 1.2-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Afif Elghraoui <a...@ghraoui.name> Description: samtools - processing sequence alignments in SAM and BAM formats samtools-test - test files for the samtools package. Closes: 799698 Changes: samtools (1.2-3) unstable; urgency=medium . * Team upload. [19de55e] Revert "Allow all scripts to be called without language extensions" (Closes: #799698) [658179c] Revert "Remove source files not present in upstream tarball" Checksums-Sha1: 8f88e9d7a964f5e36f3a91b6a15f68e314ab904a 2117 samtools_1.2-3.dsc a7e40e10880cd4a4b9d2031a6bb84fe1f230fcb8 9680 samtools_1.2-3.debian.tar.xz c85406b554f5577090a66666dd5bdc31faf3a533 2645288 samtools-test_1.2-3_all.deb a2e6d8a035d7724aa3505281a6a570d11fde2fff 395708 samtools_1.2-3_amd64.deb Checksums-Sha256: 2d86bd01a6cf3f5d59905dfa9fb28a54eeedd32042beacc94bcfb887eac37762 2117 samtools_1.2-3.dsc c8a637f5ce699a46327cb706d8958c25d9afe99c7d26a8129654ec374167813c 9680 samtools_1.2-3.debian.tar.xz 7df5567bdd9bcf564d8d06670502936d363393cdb298782bd86170ab8be5cdf1 2645288 samtools-test_1.2-3_all.deb 520c1708fa38ed91fe8607e2907e5efdc28d6ee3c18a1b69931cbb1388c39c34 395708 samtools_1.2-3_amd64.deb Files: 12ec35c1527fc3a7e311b8fe50a9c062 2117 science optional samtools_1.2-3.dsc 85f4fb610ba92b4c1c24a45209f3a3bb 9680 science optional samtools_1.2-3.debian.tar.xz db43c82cfd7efac5884d9cc3128b7938 2645288 science optional samtools-test_1.2-3_all.deb 3825611a984a808ef7e7ab85a172f06f 395708 science optional samtools_1.2-3_amd64.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJWAWF1AAoJEFeKBJTRxkbRRMQP/i3MDgiyg1P73eQqTFFIoTk8 wHojue69p+tAxhrrqthMHh9cTJjE97I99ZfPrWKfmf0d9k+5P8ZFoRZqU8nME249 d4zEDgQ9EH6mqkQ21HXcWSRHbwhhTnG5gSffdJaGJUqnTGqvsGF+/l8rdkYwWx9V qolA/a6la14if7DnKKxc7fMnU32qU16yVDJh+x5ir0wTm+XlP/Ka9qXTiCrgxtlJ oANyeQN0j+cvtAWozptrAVvI8jPARWD5g+r5cTCd+yrrCpC+PWlkb8sLVXH0dPen ybPeNrjfKdQbXgjikEQhlnIxKYeUDtZc5INtK7QUEoAIi+bOMtSv7f9mAEW1rGL/ aGh+m/dhZRGYc3oayIh2vgquAANGlNGqf1esAHXxCR07FkLy8gCtopJXxccMZ59I O7Q+mAMipGOyrfYJEQmaH3avo4fCh2HYDsFMT4gwlAvBcqtBIr6o5EP0Tc6HY/ea nLcm+ymGOqPEydWRVFGEcg3+SiyTODasIbCQwh9w5gw4iH45MkqlOjmK6qpEDixM xM2exUJG3vXw0D9sQqCGTK5/xLpOI0GhEB2Z+8ZaOFEoKo1Ofiwf1qXaL5hRFOZd PXcPw0eQNfy5FJdgUswdDU1UGCGr9waMulCitVKNcETOWmJ889CVWY+NP6v4w30q m27DkDvXraRqE5TlgAaP =2ilR -----END PGP SIGNATURE-----
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