Hi Andreas,
>> I’d rather get it to work for now and will try including the smallest
>> necessary set of code needed to build salmon. It is definitely more than one
>> file; currently I’m using trial and error to arrive at a minimal set. I have
>> also opened
On Wed, Sep 07, 2016 at 03:24:44PM +0100, Sascha Steinbiss wrote:
>
> I’d rather get it to work for now and will try including the smallest
> necessary set of code needed to build salmon. It is definitely more than one
> file; currently I’m using trial and error to arrive at a minimal set. I
Hi Andreas,
>> However, the build still fails with:
>>
>> In file included from
>> /build/salmon-0.7.1+ds1/include/UtilityFunctions.hpp:5:0,
>>from /build/salmon-0.7.1+ds1/include/SBModel.hpp:7,
>>from /build/salmon-0.7.1+ds1/src/SBModel.cpp:1:
>>
Hi Sascha,
On Wed, Sep 07, 2016 at 02:21:14PM +0100, Sascha Steinbiss wrote:
>
> It was a missing build-dependency on libboost-timer-dev. I also added the
> necessary build-deps on libdivsufsort and libsparsehash, see git.
Thanks for fixing.
> However, the build still fails with:
>
> In
Hi Andreas,
> I'm now
> facing the next configure issue which seems that BOOST_INCLUDEDIR and
> BOOST_LIBRARYDIR are not found. Any clue how to get the latest state
> of salmon Git build?
It was a missing build-dependency on libboost-timer-dev. I also added the
necessary build-deps on
Hi Andreas,
> Back to the salmon issue: When using the just uploaded rapmap and
> trying to prevent salmon's cmake from downloading it in a patch I'm now
> facing the next configure issue which seems that BOOST_INCLUDEDIR and
> BOOST_LIBRARYDIR are not found. Any clue how to get the latest
Back to the salmon issue: When using the just uploaded rapmap and
trying to prevent salmon's cmake from downloading it in a patch I'm now
facing the next configure issue which seems that BOOST_INCLUDEDIR and
BOOST_LIBRARYDIR are not found. Any clue how to get the latest state
of salmon Git
Hi Andreas,
> thanks to Sascha's help I finalised rapmap, ITPed #836914 and uploaded.
You’re welcome. I was going to finish it yesterday but I since I couldn’t find
a explicit copyright statement I raised
https://github.com/COMBINE-lab/RapMap/issues/31. It looks like I could also
have just
Hi,
thanks to Sascha's help I finalised rapmap, ITPed #836914 and uploaded.
Kind regards
Andreas.
--
http://fam-tille.de
Hi again,
>> It would be great if somebody could fix the build to bring this forward
>> since I personally do not have any interest in salmon (yet).
>
> I’ll look at it. There will be some patching necessary to bring the spdlog
> API use in RepMap up to speed with the current spdlog version in
Hi,
> On Tue, Aug 30, 2016 at 12:16:26PM +0200, Andreas Tille wrote:
>> I tried to upgrade salmon to latest upstream where this problem might
>> have possibly solved. I'm currently struck by the fact that
>>
>>https://github.com/COMBINE-lab/RapMap
>>
>> is needed to build.
>
> I have
Hi,
On Tue, Aug 30, 2016 at 12:16:26PM +0200, Andreas Tille wrote:
> I tried to upgrade salmon to latest upstream where this problem might
> have possibly solved. I'm currently struck by the fact that
>
> https://github.com/COMBINE-lab/RapMap
>
> is needed to build.
I have commited[1]
Hi,
I tried to upgrade salmon to latest upstream where this problem might
have possibly solved. I'm currently struck by the fact that
https://github.com/COMBINE-lab/RapMap
is needed to build.
I'll stop here and move on to upgrade jellyfish since salmon cmake files
are checking a versioned
Source: salmon
Version: 0.4.2+ds1-3
Severity: serious
Tags: stretch sid
User: debian...@lists.debian.org
Usertags: qa-ftbfs-20160828 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part (hopefully):
> cd
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