Bug#840974: samtools: FTBFS: configure.ac:69: error: macro PKG_CHECK_EXISTS is not defined; is a m4 file missing?

2016-10-24 Thread Sascha Steinbiss
Hi. [...] >> Thanks. This has fixed the problem for me. Is this solution OK for everyone? > > Fine for me OK, I'll upload later. Cheers Sascha

Bug#840974: samtools: FTBFS: configure.ac:69: error: macro PKG_CHECK_EXISTS is not defined; is a m4 file missing?

2016-10-24 Thread Andreas Tille
On Sun, Oct 23, 2016 at 04:12:14PM +0200, Sascha Steinbiss wrote: > > > > I've now further tweaked test/test.pl's pty setup to skip the tests instead > > of aborting with this message. So you may wish to pull this in as a patch > > as well as fixing /dev inside your chroot :-) > > > >

Bug#840974: samtools: FTBFS: configure.ac:69: error: macro PKG_CHECK_EXISTS is not defined; is a m4 file missing?

2016-10-23 Thread Sascha Steinbiss
Hi all, thanks John for the detailed explanation and the patches. >> So the real solution here is to revert your autoconf-archive to 6dc6cc5^ >> and use that unborked ax_with_curses.m4, which will in future be bundled >> with samtools. > > This should have been 0351b06^. I see. For now I have

Bug#840974: samtools: FTBFS: configure.ac:69: error: macro PKG_CHECK_EXISTS is not defined; is a m4 file missing?

2016-10-21 Thread John Marshall
On Fri, Oct 21, 2016 at 12:01:26PM +0100, I wrote: > So the real solution here is to revert your autoconf-archive to 6dc6cc5^ > and use that unborked ax_with_curses.m4, which will in future be bundled > with samtools. This should have been 0351b06^. > On Thu, Oct 20, 2016 at 10:17:03PM +0200,

Bug#840974: samtools: FTBFS: configure.ac:69: error: macro PKG_CHECK_EXISTS is not defined; is a m4 file missing?

2016-10-21 Thread John Marshall
On Thu, Oct 20, 2016 at 10:17:03PM +0200, Sascha Steinbiss wrote: > I have pushed a fix (9aac9cb) to Git, solving the FTBFS. Before doing > an upload I would be very happy if an Autotools-savvy person could > take another closer look because admittedly I am not really sure about > the cause of the

Bug#840974: samtools: FTBFS: configure.ac:69: error: macro PKG_CHECK_EXISTS is not defined; is a m4 file missing?

2016-10-20 Thread Andreas Tille
Hi Sascha, On Thu, Oct 20, 2016 at 10:17:03PM +0200, Sascha Steinbiss wrote: > Hi all, > > I have pushed a fix (9aac9cb) to Git, solving the FTBFS. Before doing an > upload I would be very happy if an Autotools-savvy person could take another > closer look because admittedly I am not really

Bug#840974: [Debian-med-packaging] Bug#840974: samtools: FTBFS: configure.ac:69: error: macro PKG_CHECK_EXISTS is not defined; is a m4 file missing?

2016-10-20 Thread Chris Lamb
Sascha Steinbiss wrote: > I fully agree and that was why I was asking for some extra pair of > eyeballs before uploading Excellent. For some reason I read your message as "I'm going to upload anyway but if someone can take a look that would be nice I guess." Mea culpa. :) Regards, --

Bug#840974: [Debian-med-packaging] Bug#840974: samtools: FTBFS: configure.ac:69: error: macro PKG_CHECK_EXISTS is not defined; is a m4 file missing?

2016-10-20 Thread Sascha Steinbiss
Hi Chris, >> I would be very happy if an Autotools-savvy person could take another >> closer look because admittedly I am not really sure about the cause >> of the problem. > […] >> I also had to disable a test (test_usage) that otherwise also seems to >> (mysteriously?) fail > > These two

Bug#840974: samtools: FTBFS: configure.ac:69: error: macro PKG_CHECK_EXISTS is not defined; is a m4 file missing?

2016-10-20 Thread Chris Lamb
Hi Sascha, > I would be very happy if an Autotools-savvy person could take another > closer look because admittedly I am not really sure about the cause > of the problem. […] > I also had to disable a test (test_usage) that otherwise also seems to > (mysteriously?) fail These two comments make

Bug#840974: samtools: FTBFS: configure.ac:69: error: macro PKG_CHECK_EXISTS is not defined; is a m4 file missing?

2016-10-20 Thread Sascha Steinbiss
Hi all, I have pushed a fix (9aac9cb) to Git, solving the FTBFS. Before doing an upload I would be very happy if an Autotools-savvy person could take another closer look because admittedly I am not really sure about the cause of the problem. I also had to disable a test (test_usage) that

Bug#840974: samtools: FTBFS: configure.ac:69: error: macro PKG_CHECK_EXISTS is not defined; is a m4 file missing?

2016-10-16 Thread Chris Lamb
Source: samtools Version: 1.3.1-2 Severity: serious Justification: fails to build from source User: reproducible-bui...@lists.alioth.debian.org Usertags: ftbfs X-Debbugs-Cc: reproducible-bui...@lists.alioth.debian.org Dear Maintainer, samtools fails to build from source in unstable/amd64: […]