Your message dated Thu, 10 Aug 2017 15:38:20 +0000 with message-id <e1dfpxq-0004fg...@fasolo.debian.org> and subject line Bug#853666: fixed in spades 3.10.1+dfsg-3 has caused the Debian Bug report #853666, regarding spades: ftbfs with GCC-7 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 853666: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=853666 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: src:spades Version: 3.9.1+dfsg-1 Severity: normal Tags: sid buster User: debian-...@lists.debian.org Usertags: ftbfs-gcc-7 Please keep this issue open in the bug tracker for the package it was filed for. If a fix in another package is required, please file a bug for the other package (or clone), and add a block in this package. Please keep the issue open until the package can be built in a follow-up test rebuild. The package fails to build in a test rebuild on at least amd64 with gcc-7/g++-7, but succeeds to build with gcc-6/g++-6. The severity of this report may be raised before the buster release. There is no need to fix this issue in time for the stretch release. The full build log can be found at: http://people.debian.org/~doko/logs/gcc7-20170126/spades_3.9.1+dfsg-1_unstable_gcc7.log The last lines of the build log are at the end of this report. To build with GCC 7, either set CC=gcc-7 CXX=g++-7 explicitly, or install the gcc, g++, gfortran, ... packages from experimental. apt-get -t=experimental install g++ Common build failures are new warnings resulting in build failures with -Werror turned on, or new/dropped symbols in Debian symbols files. For other C/C++ related build failures see the porting guide at http://gcc.gnu.org/gcc-7/porting_to.html [...] ^~~~~~~~ /<<BUILDDIR>>/spades-3.9.1+dfsg/src/modules/dev_support/segfault_handler.hpp:21:33: error: expected ')' before 'const' segfault_handler(callback_t const &cb = 0) { ^~~~~ /<<BUILDDIR>>/spades-3.9.1+dfsg/src/modules/dev_support/segfault_handler.hpp:35:12: error: 'callback_t' does not name a type; did you mean 'clock_t'? static callback_t &callback() { ^~~~~~~~~~ clock_t /<<BUILDDIR>>/spades-3.9.1+dfsg/src/modules/dev_support/segfault_handler.hpp: In destructor 'segfault_handler::~segfault_handler()': /<<BUILDDIR>>/spades-3.9.1+dfsg/src/modules/dev_support/segfault_handler.hpp:30:9: error: 'callback' was not declared in this scope callback() = 0; ^~~~~~~~ /<<BUILDDIR>>/spades-3.9.1+dfsg/src/modules/dev_support/segfault_handler.hpp:30:9: note: suggested alternative: 'calloc' callback() = 0; ^~~~~~~~ calloc /<<BUILDDIR>>/spades-3.9.1+dfsg/src/modules/dev_support/segfault_handler.hpp: In static member function 'static void segfault_handler::handler(int)': /<<BUILDDIR>>/spades-3.9.1+dfsg/src/modules/dev_support/segfault_handler.hpp:45:17: error: 'callback' was not declared in this scope if (callback()) ^~~~~~~~ /<<BUILDDIR>>/spades-3.9.1+dfsg/src/modules/dev_support/segfault_handler.hpp:45:17: note: suggested alternative: 'calloc' if (callback()) ^~~~~~~~ calloc In file included from /<<BUILDDIR>>/spades-3.9.1+dfsg/src/modules/data_structures/sequence/seq.hpp:38:0, from /<<BUILDDIR>>/spades-3.9.1+dfsg/src/modules/data_structures/sequence/sequence.hpp:16, from /<<BUILDDIR>>/spades-3.9.1+dfsg/src/modules/data_structures/indices/edge_info_updater.hpp:12, from /<<BUILDDIR>>/spades-3.9.1+dfsg/src/modules/data_structures/indices/edge_position_index.hpp:11, from /<<BUILDDIR>>/spades-3.9.1+dfsg/src/modules/pipeline/graph_pack.hpp:10, from /<<BUILDDIR>>/spades-3.9.1+dfsg/src/projects/spades/launch.hpp:12, from /<<BUILDDIR>>/spades-3.9.1+dfsg/src/projects/spades/main.cpp:15: /<<BUILDDIR>>/spades-3.9.1+dfsg/src/modules/data_structures/sequence/nucl.hpp: In member function 'bool nucl_complement_functor::operator()(char) const': /<<BUILDDIR>>/spades-3.9.1+dfsg/src/modules/data_structures/sequence/nucl.hpp:84:19: warning: ?: using integer constants in boolean context [-Wint-in-bool-context] return cc ? cc : 'N'; ~~~^~~~~~~~~~ projects/spades/CMakeFiles/spades.dir/build.make:62: recipe for target 'projects/spades/CMakeFiles/spades.dir/main.cpp.o' failed make[4]: *** [projects/spades/CMakeFiles/spades.dir/main.cpp.o] Error 1 make[4]: Leaving directory '/<<BUILDDIR>>/spades-3.9.1+dfsg/build_spades' CMakeFiles/Makefile2:1421: recipe for target 'projects/spades/CMakeFiles/spades.dir/all' failed make[3]: *** [projects/spades/CMakeFiles/spades.dir/all] Error 2 make[3]: Leaving directory '/<<BUILDDIR>>/spades-3.9.1+dfsg/build_spades' Makefile:149: recipe for target 'all' failed make[2]: *** [all] Error 2 make[2]: Leaving directory '/<<BUILDDIR>>/spades-3.9.1+dfsg/build_spades' debian/rules:41: recipe for target 'override_dh_auto_build' failed make[1]: *** [override_dh_auto_build] Error 2 make[1]: Leaving directory '/<<BUILDDIR>>/spades-3.9.1+dfsg' debian/rules:23: recipe for target 'build' failed make: *** [build] Error 2 dpkg-buildpackage: error: debian/rules build gave error exit status 2
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--- Begin Message ---Source: spades Source-Version: 3.10.1+dfsg-3 We believe that the bug you reported is fixed in the latest version of spades, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 853...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Sascha Steinbiss <sa...@debian.org> (supplier of updated spades package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Thu, 10 Aug 2017 16:39:50 +0200 Source: spades Binary: spades Architecture: source amd64 Version: 3.10.1+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sa...@debian.org> Description: spades - genome assembler for single-cell and isolates data sets Closes: 853666 Changes: spades (3.10.1+dfsg-3) unstable; urgency=medium . * Fix FTBFS with GCC 7. Closes: #853666 * Update homepage. * Bump Standards-Version. Checksums-Sha1: 09ae34a1b3eb687a0289119a204698fcae621ce5 1985 spades_3.10.1+dfsg-3.dsc 235590ff2852fae2c0ce818bb168f24588305967 20024 spades_3.10.1+dfsg-3.debian.tar.xz 445fd9852fc99865474a868e261bb28f010aff84 63755304 spades-dbgsym_3.10.1+dfsg-3_amd64.deb 5aab6899354b3b87a405ec8815b0839e7045321c 7912 spades_3.10.1+dfsg-3_amd64.buildinfo 5f6858620d17b15e14ec2ff3ea8c456776b98b4e 3632816 spades_3.10.1+dfsg-3_amd64.deb Checksums-Sha256: c9104e5a4a658149aa9199ca6a1435df5c9eb67061dc95787e65dfa58fb3c1c3 1985 spades_3.10.1+dfsg-3.dsc 86d47b2fa45714ed9c7b684e16e3d674c4e3063e969bfdcef6e97ffa21717562 20024 spades_3.10.1+dfsg-3.debian.tar.xz 292d809dfd433b3f27bdd506315da9862b04a12d90e200b5146fd4b1f44fad0c 63755304 spades-dbgsym_3.10.1+dfsg-3_amd64.deb 8e15a4a1c5035e59f569e66cf42f39881b2fa5acf67a9c76f94707ea3a18b35f 7912 spades_3.10.1+dfsg-3_amd64.buildinfo 23eda6e2071c8f2652067c83080f89e1db87499a35eba0207da6f9cf8d2eeabe 3632816 spades_3.10.1+dfsg-3_amd64.deb Files: 77386fbed0e2a001eb64e710e3d9439e 1985 science optional spades_3.10.1+dfsg-3.dsc 45705c301fe2cf20c010c2e93172f411 20024 science optional spades_3.10.1+dfsg-3.debian.tar.xz a4e8373ef4555c3784c24267c0bc076b 63755304 debug extra spades-dbgsym_3.10.1+dfsg-3_amd64.deb c8a42850bec6ec48e53d3f4472d06c4f 7912 science optional spades_3.10.1+dfsg-3_amd64.buildinfo f507bf96c650c5dba1c03a33d9276db5 3632816 science optional spades_3.10.1+dfsg-3_amd64.deb -----BEGIN PGP SIGNATURE----- iQEzBAEBCAAdFiEEhFH5F4Fy5+Lcc/eVUfhKj+zKfgkFAlmMdosACgkQUfhKj+zK fgn+Bgf+NgyHiunJhHKqgC4R29ptnVEeesRuVOVCAzyKLJCOb5+RdxHnp6UPj8kW tBgSBqWjY11LP22H9EjWUW2tqCN8tCCaczRatJyYCJJkwYD0OPxfZ2KaXbkjJY+q xDAKTzlA2l3xOAlwQFBIV8gjhyg0nClA+g1dlK07iQb26XdZCaY7X5z+U0fo1QXE SUwktlrbNvmsJDS+WBnxKOIu6dSNccgO9nD5rgxauA5UumkAGrlnUix1ENXHvw5U 8e8QzAtWUBYvLPYvPryxCEJnr483ByhDMGz9/faM7UTElWizjspQoAI3PMAGb1ws atKsLvu/K24uBiYGQ6OTqk4qIk81qQ== =4dZP -----END PGP SIGNATURE-----
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