Your message dated Thu, 31 Jan 2019 21:51:32 +0000
with message-id <e1gpkfa-000j7o...@fasolo.debian.org>
and subject line Bug#887305: fixed in ugene 1.31.1+dfsg-1
has caused the Debian Bug report #887305,
regarding ugene: FTBFS ucontext_reader.cc:92:12: error: invalid use of
incomplete type 'const struct google_breakpad::ucontext'
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
887305: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=887305
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: ugene
Version: 1.25.0+dfsg-1
Severity: serious
Tags: sid buster
Justification: fails to build from source
Hi,
ugene recently started to FTBFS in sid:
g++ -c -pipe -g -O2 -fdebug-prefix-map=/build/ugene-1.25.0+dfsg=.
-fstack-protector-strong -Wformat -Werror=format-security -g -O2
-fdebug-prefix-map=/build/ugene-1.25.0+dfsg=. -fstack-protector-strong -Wformat
-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time
-D_FORTIFY_SOURCE=2 -w -D_REENTRANT -fPIC -DU2_DISTRIBUTION_INFO=sources
-DUGENE_VERSION=1.25.0 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=25
-DUGENE_VER_PATCH=0 -DUGENE_X86 -DUGENE_DATA_DIR=\"/usr/share/ugene/data\"
-DHI_EXCLUDED -DNDEBUG -DQT_NO_DEBUG -DQT_CORE_LIB -I. -I/usr/include/qt5
-I/usr/include -Isrc -I/usr/include/x86_64-linux-gnu/qt5
-I/usr/include/x86_64-linux-gnu/qt5/QtCore -Irelease
-I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -o
_tmp/obj/release/ucontext_reader.o
src/client/linux/dump_writer_common/ucontext_reader.cc
src/client/linux/dump_writer_common/ucontext_reader.cc: In static member
function 'static uintptr_t
google_breakpad::UContextReader::GetStackPointer(const
google_breakpad::ucontext*)':
src/client/linux/dump_writer_common/ucontext_reader.cc:92:12: error: invalid
use of incomplete type 'const struct google_breakpad::ucontext'
return uc->uc_mcontext.gregs[REG_RSP];
^~
In file included from
src/client/linux/dump_writer_common/ucontext_reader.cc:30:0:
src/client/linux/dump_writer_common/ucontext_reader.h:44:49: note: forward
declaration of 'struct google_breakpad::ucontext'
static uintptr_t GetStackPointer(const struct ucontext* uc);
^~~~~~~~
src/client/linux/dump_writer_common/ucontext_reader.cc:92:14: error: invalid
use of incomplete type 'const struct google_breakpad::ucontext'
return uc->uc_mcontext.gregs[REG_RSP];
^~~~~~~~~~~
In file included from
src/client/linux/dump_writer_common/ucontext_reader.cc:30:0:
src/client/linux/dump_writer_common/ucontext_reader.h:44:49: note: forward
declaration of 'struct google_breakpad::ucontext'
static uintptr_t GetStackPointer(const struct ucontext* uc);
^~~~~~~~
src/client/linux/dump_writer_common/ucontext_reader.cc: In static member
function 'static uintptr_t
google_breakpad::UContextReader::GetInstructionPointer(const
google_breakpad::ucontext*)':
src/client/linux/dump_writer_common/ucontext_reader.cc:96:12: error: invalid
use of incomplete type 'const struct google_breakpad::ucontext'
return uc->uc_mcontext.gregs[REG_RIP];
^~
In file included from
src/client/linux/dump_writer_common/ucontext_reader.cc:30:0:
src/client/linux/dump_writer_common/ucontext_reader.h:44:49: note: forward
declaration of 'struct google_breakpad::ucontext'
static uintptr_t GetStackPointer(const struct ucontext* uc);
^~~~~~~~
src/client/linux/dump_writer_common/ucontext_reader.cc:96:14: error: invalid
use of incomplete type 'const struct google_breakpad::ucontext'
return uc->uc_mcontext.gregs[REG_RIP];
^~~~~~~~~~~
In file included from
src/client/linux/dump_writer_common/ucontext_reader.cc:30:0:
src/client/linux/dump_writer_common/ucontext_reader.h:44:49: note: forward
declaration of 'struct google_breakpad::ucontext'
static uintptr_t GetStackPointer(const struct ucontext* uc);
^~~~~~~~
src/client/linux/dump_writer_common/ucontext_reader.cc: In static member
function 'static void
google_breakpad::UContextReader::FillCPUContext(google_breakpad::RawContextCPU*,
const google_breakpad::ucontext*, const _libc_fpstate*)':
src/client/linux/dump_writer_common/ucontext_reader.cc:101:26: error: invalid
use of incomplete type 'const struct google_breakpad::ucontext'
const greg_t* regs = uc->uc_mcontext.gregs;
^~
In file included from
src/client/linux/dump_writer_common/ucontext_reader.cc:30:0:
src/client/linux/dump_writer_common/ucontext_reader.h:44:49: note: forward
declaration of 'struct google_breakpad::ucontext'
static uintptr_t GetStackPointer(const struct ucontext* uc);
^~~~~~~~
src/client/linux/dump_writer_common/ucontext_reader.cc:101:28: error: invalid
use of incomplete type 'const struct google_breakpad::ucontext'
const greg_t* regs = uc->uc_mcontext.gregs;
^~~~~~~~~~~
In file included from
src/client/linux/dump_writer_common/ucontext_reader.cc:30:0:
src/client/linux/dump_writer_common/ucontext_reader.h:44:49: note: forward
declaration of 'struct google_breakpad::ucontext'
static uintptr_t GetStackPointer(const struct ucontext* uc);
^~~~~~~~
Makefile.Release:455: recipe for target '_tmp/obj/release/ucontext_reader.o'
failed
make[3]: *** [_tmp/obj/release/ucontext_reader.o] Error 1
Andreas
ugene_1.25.0+dfsg-1.log.gz
Description: application/gzip
--- End Message ---
--- Begin Message ---
Source: ugene
Source-Version: 1.31.1+dfsg-1
We believe that the bug you reported is fixed in the latest version of
ugene, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 887...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated ugene package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Thu, 31 Jan 2019 21:26:13 +0100
Source: ugene
Binary: ugene ugene-data ugene-dbgsym
Architecture: source all amd64
Version: 1.31.1+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
ugene - integrated bioinformatics toolkit
ugene-data - required data for UGENE - integrated bioinformatics toolkit
Closes: 868885 887305
Changes:
ugene (1.31.1+dfsg-1) unstable; urgency=medium
.
[ Steffen Moeller ]
* debian/upstream/metadata:
- Added references to registries
- yamllint cleanliness
.
[ Andreas Tille ]
* New upstream version
Closes: #868885, #887305
* Standards-Version: 4.3.0
* Cleanup d/watch
* More Files-Excluded
* debhelper 12
* Point Vcs fields to salsa.debian.org
* Drop unused lintian-overrides
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--- End Message ---
