Your message dated Tue, 17 Apr 2018 14:05:05 +0000 with message-id <e1f8reh-000b2k...@fasolo.debian.org> and subject line Bug#894289: fixed in htsjdk 2.14.3+dfsg-1 has caused the Debian Bug report #894289, regarding htsjdk FTBFS with openjdk-9 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 894289: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=894289 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: htsjdk Version: 2.8.1+dfsg-2 Severity: serious https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/htsjdk.html ... /build/1st/htsjdk-2.8.1+dfsg/src/main/java/htsjdk/samtools/SAMSequenceDictionary.java:35: error: package javax.xml.bind.annotation is not visible import javax.xml.bind.annotation.XmlElement; ^ (package javax.xml.bind.annotation is declared in module java.xml.bind, which is not in the module graph) /build/1st/htsjdk-2.8.1+dfsg/src/main/java/htsjdk/samtools/SAMSequenceDictionary.java:36: error: package javax.xml.bind.annotation is not visible import javax.xml.bind.annotation.XmlRootElement; ^ (package javax.xml.bind.annotation is declared in module java.xml.bind, which is not in the module graph) /build/1st/htsjdk-2.8.1+dfsg/src/main/java/htsjdk/samtools/SAMSequenceDictionary.java:37: error: package javax.xml.bind.annotation is not visible import javax.xml.bind.annotation.XmlTransient; ^ (package javax.xml.bind.annotation is declared in module java.xml.bind, which is not in the module graph) /build/1st/htsjdk-2.8.1+dfsg/src/main/java/htsjdk/samtools/SAMSequenceRecord.java:35: error: package javax.xml.bind.annotation is not visible import javax.xml.bind.annotation.XmlAttribute; ^ (package javax.xml.bind.annotation is declared in module java.xml.bind, which is not in the module graph) /build/1st/htsjdk-2.8.1+dfsg/src/main/java/htsjdk/samtools/SAMSequenceRecord.java:36: error: package javax.xml.bind.annotation is not visible import javax.xml.bind.annotation.XmlRootElement; ^ (package javax.xml.bind.annotation is declared in module java.xml.bind, which is not in the module graph) /build/1st/htsjdk-2.8.1+dfsg/src/main/java/htsjdk/samtools/SAMSequenceRecord.java:37: error: package javax.xml.bind.annotation is not visible import javax.xml.bind.annotation.XmlValue; ^ (package javax.xml.bind.annotation is declared in module java.xml.bind, which is not in the module graph) /build/1st/htsjdk-2.8.1+dfsg/src/main/java/htsjdk/samtools/AbstractSAMHeaderRecord.java:31: error: package javax.xml.bind.annotation is not visible import javax.xml.bind.annotation.XmlTransient; ^ (package javax.xml.bind.annotation is declared in module java.xml.bind, which is not in the module graph) 7 errors
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--- Begin Message ---Source: htsjdk Source-Version: 2.14.3+dfsg-1 We believe that the bug you reported is fixed in the latest version of htsjdk, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 894...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated htsjdk package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Tue, 17 Apr 2018 15:14:40 +0200 Source: htsjdk Binary: libhtsjdk-java libhtsjdk-java-doc Architecture: source Version: 2.14.3+dfsg-1 Distribution: experimental Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: libhtsjdk-java - Java API for high-throughput sequencing data (HTS) formats libhtsjdk-java-doc - Documentation for the java HTSJDK library Closes: 894289 Changes: htsjdk (2.14.3+dfsg-1) experimental; urgency=medium . [ Andreas Tille ] * New upstream version Closes: #894289 * cme fix dpkg-control * Standards-Version: 4.1.4 * Point Vcs-fields to salsa.d.o * Update d/copyright * d/rules: fix get-poms target * Use 2to3 to convert Python script to Python3 . [ Olivier Sallou ] * d/patches/30-disable-scalatest.patch Disable scala testing as scalatest is not available in Debian yet * d/rules * Fix JDK9 with --add-modules java.xml.bind in javadoc generation * Fix javadoc generation . [TODO - O. Sallou in progress] * Reintroduce unit tests now that gradle 3.4 is available in sid - [done] new patch added for latest upstream, referencing junit classes - [done] added testng() call in build.gradle with a patch and set test call in d/rules back - testng fails now with jcommander classnotfound exception, this is a testng bug (#895886: testng: jcommander classes not found), wait to be fixed to enable tests in d/rules Checksums-Sha1: 55d6016738e2fd4db444f6668a87339c45913fa3 2421 htsjdk_2.14.3+dfsg-1.dsc 0d7d61d195de30057ad99882232fc4456476eb44 7885856 htsjdk_2.14.3+dfsg.orig.tar.xz c0b3fb4061953cbdb1698823d1283a7679832461 26696 htsjdk_2.14.3+dfsg-1.debian.tar.xz Checksums-Sha256: 3dd90798e636c7ceaa2719e4f10fc7e706854b02dc394e33ea155958531a0bf3 2421 htsjdk_2.14.3+dfsg-1.dsc 4294dab068800f6e7961c395430ab72959006c5d47fd8dc0ff28406ef879b64c 7885856 htsjdk_2.14.3+dfsg.orig.tar.xz ea816f899b160bc0f0bf4070b0c519f1df7920af709504a34143c12c7981c375 26696 htsjdk_2.14.3+dfsg-1.debian.tar.xz Files: b0b3dd061054542b7775e3c68736b880 2421 science optional htsjdk_2.14.3+dfsg-1.dsc 9789aa289267597a5d278c260c03b222 7885856 science optional htsjdk_2.14.3+dfsg.orig.tar.xz a9c8b4919a04c8a82186f0bc103f64aa 26696 science optional htsjdk_2.14.3+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlrV+aYRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtF5Qw//V7OKLivnrMCvEUw3Y580BaaBEd+7Tkgg eCiTCZQcgdv8Uusr9/6c/4I6/C3L7QKtUgq0TzFHDvt/g24//qIVXdsnGPJeAcqf +qguGUrlk8jaqWyfalFCIl7OTSo16AvwHynw4lyqjEZ3tQmuyUNBICKV7UjeUQMT w51XTmk/ifjAYg4fhyF0wENVO7GrhJUjoio6uhhe/O9UKoCII67WAQ0B9E8NPudd WLp057bRcK/u0UqhEXKzsVAy8YUGAzpcMzFxw02irLC5hW01v3g5cgdhCoYHLcFw Y+KgcYeaWdjN2rQUY7h/iQt4J8YCFi9uo9xkfvd0hPcbmzi1SHTlpP1BRJNdG6h6 sHO4jr1cfcqdqKqhhoIFIaWBrgvUpf9r6kNMUqX2mTzNt5N0Zmn7Mt4yGjfYRcY9 cpPLoy+IOdBapFBFz6e3WdRhSHPK1VMpQN5CARSMdNrdRoCdbKVduHjeh7/dwPTX 77aoCVox6uMVHMQWGKc077uVE+ZOl3NyHsiUy+H2GrbmeDOs60jhBhSsWDjmHVIU Pvr2bM3eGarpfWCyIKF1lwZCRKAgAjKsSQUbnBh6EfI2pHLhZau73A/UBczbXbXf UIlW9SeFVj/2qMQ6ZWPlbTCOI0gv3loQSZJ7s9wBG9sqyIHDmhVsQhzu5hY5oL1w QLMwOWY7EOE= =t68v -----END PGP SIGNATURE-----
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