Source: htsjdk Version: 2.16.1+dfsg-1 Severity: serious Tags: ftbfs https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/htsjdk.html
... Compiling with JDK Java compiler API. /build/1st/htsjdk-2.16.1+dfsg/src/main/java/htsjdk/samtools/SAMSequenceDictionary.java:34: error: package javax.xml.bind.annotation does not exist import javax.xml.bind.annotation.XmlElement; ^ /build/1st/htsjdk-2.16.1+dfsg/src/main/java/htsjdk/samtools/SAMSequenceDictionary.java:35: error: package javax.xml.bind.annotation does not exist import javax.xml.bind.annotation.XmlRootElement; ^ /build/1st/htsjdk-2.16.1+dfsg/src/main/java/htsjdk/samtools/SAMSequenceDictionary.java:36: error: package javax.xml.bind.annotation does not exist import javax.xml.bind.annotation.XmlTransient; ^ /build/1st/htsjdk-2.16.1+dfsg/src/main/java/htsjdk/samtools/SAMSequenceRecord.java:26: error: package javax.xml.bind.annotation does not exist import javax.xml.bind.annotation.XmlAttribute; ^ /build/1st/htsjdk-2.16.1+dfsg/src/main/java/htsjdk/samtools/SAMSequenceRecord.java:27: error: package javax.xml.bind.annotation does not exist import javax.xml.bind.annotation.XmlRootElement; ^ /build/1st/htsjdk-2.16.1+dfsg/src/main/java/htsjdk/samtools/SAMSequenceRecord.java:28: error: package javax.xml.bind.annotation does not exist import javax.xml.bind.annotation.XmlValue; ^ /build/1st/htsjdk-2.16.1+dfsg/src/main/java/htsjdk/samtools/AbstractSAMHeaderRecord.java:26: error: package javax.xml.bind.annotation does not exist import javax.xml.bind.annotation.XmlTransient; ^ /build/1st/htsjdk-2.16.1+dfsg/src/main/java/htsjdk/samtools/AbstractSAMHeaderRecord.java:36: error: cannot find symbol @XmlTransient /* don't consider this class for XML-serialization */ ^ symbol: class XmlTransient /build/1st/htsjdk-2.16.1+dfsg/src/main/java/htsjdk/samtools/SAMSequenceRecord.java:41: error: cannot find symbol @XmlRootElement(name="Reference") ^ symbol: class XmlRootElement /build/1st/htsjdk-2.16.1+dfsg/src/main/java/htsjdk/samtools/SAMSequenceDictionary.java:44: error: cannot find symbol @XmlRootElement(name="References") ^ symbol: class XmlRootElement /build/1st/htsjdk-2.16.1+dfsg/src/main/java/htsjdk/samtools/SAMSequenceDictionary.java:51: error: cannot find symbol @XmlElement(name="Reference") ^ symbol: class XmlElement location: class SAMSequenceDictionary /build/1st/htsjdk-2.16.1+dfsg/src/main/java/htsjdk/samtools/SAMSequenceDictionary.java:63: error: cannot find symbol @XmlTransient //we use the field instead of getter/setter ^ symbol: class XmlTransient location: class SAMSequenceDictionary /build/1st/htsjdk-2.16.1+dfsg/src/main/java/htsjdk/samtools/SAMSequenceRecord.java:103: error: cannot find symbol @XmlValue ^ symbol: class XmlValue location: class SAMSequenceRecord /build/1st/htsjdk-2.16.1+dfsg/src/main/java/htsjdk/samtools/SAMSequenceRecord.java:117: error: cannot find symbol @XmlAttribute(name="length") ^ symbol: class XmlAttribute location: class SAMSequenceRecord /build/1st/htsjdk-2.16.1+dfsg/src/main/java/htsjdk/samtools/SAMSequenceRecord.java:121: error: cannot find symbol @XmlAttribute(name="assembly") ^ symbol: class XmlAttribute location: class SAMSequenceRecord /build/1st/htsjdk-2.16.1+dfsg/src/main/java/htsjdk/samtools/SAMSequenceRecord.java:125: error: cannot find symbol @XmlAttribute(name="species") ^ symbol: class XmlAttribute location: class SAMSequenceRecord /build/1st/htsjdk-2.16.1+dfsg/src/main/java/htsjdk/samtools/SAMSequenceRecord.java:129: error: cannot find symbol @XmlAttribute(name="md5") ^ symbol: class XmlAttribute location: class SAMSequenceRecord /build/1st/htsjdk-2.16.1+dfsg/src/main/java/htsjdk/samtools/SAMSequenceRecord.java:136: error: cannot find symbol @XmlAttribute(name="index") ^ symbol: class XmlAttribute location: class SAMSequenceRecord /build/1st/htsjdk-2.16.1+dfsg/src/main/java/htsjdk/samtools/cram/structure/EncodingParams.java:36: error: package javax.xml.bind does not exist return id.name() + ":" + javax.xml.bind.DatatypeConverter.printHexBinary(Arrays.copyOfRange(params, 0, Math.max(20, params.length))); ^ Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 19 errors