Your message dated Wed, 25 Aug 2021 01:31:49 +0530
with message-id <YSVQLcMqAXN5CwYp@debian>
and subject line Re: vsearch: ftbfs with autoconf 2.70
has caused the Debian Bug report #978918,
regarding vsearch: ftbfs with autoconf 2.70
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
978918: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=978918
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:vsearch
Version: 2.15.0-1
Severity: normal
Tags: sid bookworm
User: d...@debian.org
Usertags: ftbfs-ac270
[This bug report is not targeted to the upcoming bullseye release]
The package fails to build in a test rebuild on at least amd64 with
autoconf 2.70, but succeeds to build with autoconf 2.69. The
severity of this report will be raised before the bookworm release,
so nothing has to be done for the bullseye release.
The full build log can be found at:
http://qa-logs.debian.net/2020/09/26.ac270/vsearch_2.15.0-1_unstable_ac270.log
The last lines of the build log are at the end of this report.
To build with autoconf 2.70, please install the autoconf package from
experimental: apt-get -t=experimental install autoconf
[...]
/usr/lib/gcc/x86_64-linux-gnu/10/include/mm_malloc.h: In function ‘void*
_mm_malloc(size_t, size_t)’:
/usr/lib/gcc/x86_64-linux-gnu/10/include/mm_malloc.h:42:12: error: ‘malloc’ was
not declared in this scope
42 | return malloc (__size);
| ^~~~~~
/usr/lib/gcc/x86_64-linux-gnu/10/include/mm_malloc.h:28:1: note: ‘malloc’ is
defined in header ‘<cstdlib>’; did you forget to ‘#include <cstdlib>’?
27 | #include <stdlib.h>
+++ |+#include <cstdlib>
28 |
In file included from /usr/lib/gcc/x86_64-linux-gnu/10/include/xmmintrin.h:34,
from /usr/lib/gcc/x86_64-linux-gnu/10/include/immintrin.h:29,
from /usr/lib/gcc/x86_64-linux-gnu/10/include/x86intrin.h:32,
from vsearch.h:103,
from allpairs.cc:61:
/usr/lib/gcc/x86_64-linux-gnu/10/include/mm_malloc.h: In function ‘void*
_mm_malloc(size_t, size_t)’:
/usr/lib/gcc/x86_64-linux-gnu/10/include/mm_malloc.h:42:12: error: ‘malloc’ was
not declared in this scope
42 | return malloc (__size);
| ^~~~~~
In file included from /usr/lib/gcc/x86_64-linux-gnu/10/include/xmmintrin.h:34,
from /usr/lib/gcc/x86_64-linux-gnu/10/include/immintrin.h:29,
from /usr/lib/gcc/x86_64-linux-gnu/10/include/x86intrin.h:32,
from vsearch.h:103,
from align.cc:61:
/usr/lib/gcc/x86_64-linux-gnu/10/include/mm_malloc.h: In function ‘void*
_mm_malloc(size_t, size_t)’:
/usr/lib/gcc/x86_64-linux-gnu/10/include/mm_malloc.h:42:12: error: ‘malloc’ was
not declared in this scope
42 | return malloc (__size);
| ^~~~~~
/usr/lib/gcc/x86_64-linux-gnu/10/include/mm_malloc.h:28:1: note: ‘malloc’ is
defined in header ‘<cstdlib>’; did you forget to ‘#include <cstdlib>’?
27 | #include <stdlib.h>
+++ |+#include <cstdlib>
28 |
/usr/lib/gcc/x86_64-linux-gnu/10/include/mm_malloc.h:28:1: note: ‘malloc’ is
defined in header ‘<cstdlib>’; did you forget to ‘#include <cstdlib>’?
27 | #include <stdlib.h>
+++ |+#include <cstdlib>
28 |
In file included from /usr/lib/gcc/x86_64-linux-gnu/10/include/xmmintrin.h:34,
from /usr/lib/gcc/x86_64-linux-gnu/10/include/immintrin.h:29,
from /usr/lib/gcc/x86_64-linux-gnu/10/include/x86intrin.h:32,
from vsearch.h:103,
from align_simd.cc:61:
/usr/lib/gcc/x86_64-linux-gnu/10/include/mm_malloc.h: In function ‘void*
_mm_malloc(size_t, size_t)’:
/usr/lib/gcc/x86_64-linux-gnu/10/include/mm_malloc.h:42:12: error: ‘malloc’ was
not declared in this scope
42 | return malloc (__size);
| ^~~~~~
/usr/lib/gcc/x86_64-linux-gnu/10/include/mm_malloc.h:28:1: note: ‘malloc’ is
defined in header ‘<cstdlib>’; did you forget to ‘#include <cstdlib>’?
27 | #include <stdlib.h>
+++ |+#include <cstdlib>
28 |
arch.cc: In function ‘void* xrealloc(void*, size_t)’:
arch.cc:225:14: error: ‘realloc’ was not declared in this scope
225 | void * t = realloc(ptr, size);
| ^~~~~~~
arch.cc:62:1: note: ‘realloc’ is defined in header ‘<cstdlib>’; did you forget
to ‘#include <cstdlib>’?
61 | #include "vsearch.h"
+++ |+#include <cstdlib>
62 |
make[4]: *** [Makefile:729: arch.o] Error 1
make[4]: *** Waiting for unfinished jobs....
make[4]: *** [Makefile:729: align_simd.o] Error 1
make[4]: *** [Makefile:729: align.o] Error 1
make[4]: *** [Makefile:729: allpairs.o] Error 1
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[3]: *** [Makefile:374: all-recursive] Error 1
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[2]: *** [Makefile:315: all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build: error: make -j4 returned exit code 2
make[1]: *** [debian/rules:28: override_dh_auto_build] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:25: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--- End Message ---
--- Begin Message ---
works fine, closing
cf: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=978794#19
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--- End Message ---
